View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0769_low_11 (Length: 433)
Name: NF0769_low_11
Description: NF0769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0769_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 38 - 424
Target Start/End: Original strand, 49914170 - 49914556
Alignment:
| Q |
38 |
gcagaacctgtgcatggagttgaactttacttttgcccacctcataagaaaacagttgaaatgctcagcaagatacttccaaaggaacaaattgaagcag |
137 |
Q |
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| T |
49914170 |
gcagaacctgtgcatggagttgaactttacttttgcccacctcataagaaaacagttgaaatgctcagcaagatacttccaaaggaacaaattgaagcag |
49914269 |
T |
|
| Q |
138 |
ttaattctattgataatggtctaattggtattattgtatggagaaaaactaatataactacatctatatctcccaccgcgcaatcacatcacaaacatag |
237 |
Q |
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| T |
49914270 |
ttaattctattgataatggtctaattggtattattgtatggagaaaaactaatataactacatctatatctcccaccgcgcaatcacatcacaaacatag |
49914369 |
T |
|
| Q |
238 |
ctctaaaaggcaaattttgagtagaagacaacaagatactaatgtgaatgccaattctacccataatgcagtgccctctatggggtttaagaccaccgtg |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49914370 |
ctctaaaaggcaaattttgagtagaagacaacaagatactaatgtgaatgccaattctacccataatgcagtgccctctatggggtttaagaccaccgtg |
49914469 |
T |
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| Q |
338 |
agtgaacctccgagtggtgatgatgatgatgttcctcctggattcgggccaccggcccgggttgaggatgacctcccggagtataat |
424 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
49914470 |
agtgaacctccgagtggtgatgatgatgatgttcctcctggattcgggccaccagcccgggttgaggatgacctcccggagtataat |
49914556 |
T |
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