View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0769_low_13 (Length: 422)
Name: NF0769_low_13
Description: NF0769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0769_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 278
Target Start/End: Complemental strand, 35476902 - 35476637
Alignment:
| Q |
13 |
aatataggtagggtgggggaagtggtgaggaacagacaacgaaaatgaggtttgaaaggaaaccacaccacatgaacgatggggatggacatggacacgg |
112 |
Q |
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| T |
35476902 |
aatataggtagggtgggggaagtggtgagggacagataacgaaaatgaggtttgaaaggaaaccacaccacatgaacgatggggatggacatggacacgg |
35476803 |
T |
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| Q |
113 |
tggtggggtaattctataagcatggacctatatctatatatggtccactaccctagctaaataatactataaaacaaatgtgatgtattagtttgaccaa |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35476802 |
tggtggggtaattctataagcatggacctatatctatatatggtccactaccctagctaaataatactacaaaacaaatgtgatgtattagtttgaccaa |
35476703 |
T |
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| Q |
213 |
aaaatatgcaccaacaatatacnnnnnnncttttagaaatgctaacttgtatccttaaggcacaag |
278 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
35476702 |
aaaatatgcaccaacaatatactttatttcttttagaaatgctaacttgtgtccttaaggcacaag |
35476637 |
T |
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