View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0769_low_17 (Length: 396)
Name: NF0769_low_17
Description: NF0769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0769_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 35410085 - 35409716
Alignment:
| Q |
1 |
ccactcagccacatggcattagactacttactgaagattatccttatgcggctgatggactccccatatggactagtatagagaagttggtcaggacctg |
100 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
35410085 |
ccactcggccacatggcattagactacttattgaagattatccttatgcggctgatggactcctcatatggtctagtatagagaagttggtcaggaccta |
35409986 |
T |
|
| Q |
101 |
tgtgaaccattactacaaagatttaaatgccgtttcttctgacaatgaactccagtcctggtacaaagaattcatcaacatggggcaccctgatcataaa |
200 |
Q |
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|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35409985 |
tgtgaaccattactacaaagatttgaatgccatttcttctgacaatgaactccagtcctggtacaaagaattcatcaacatggggcaccctgatcataaa |
35409886 |
T |
|
| Q |
201 |
aatgctacctggtggcctaaactaaacacccctgaggatctcatctccttgcttaccaccattatctggactgtatcagcgcaacatgctgtcttgaact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35409885 |
aatgctacctggtggcctaaactaaacacccctgaggatctcatctccttgcttaccaccattatctggactgtatcagcgcaacatgctgtcttgaact |
35409786 |
T |
|
| Q |
301 |
tcagtcaatacccctatggtggatatgttccaatccggccacaattaatgcgaaaattaattcctaatga |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35409785 |
tcagtcaatacccctatggtggatatgttccaatccggccacaattaatgcgaaaattaattcctaatga |
35409716 |
T |
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