View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0769_low_18 (Length: 394)
Name: NF0769_low_18
Description: NF0769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0769_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 23 - 365
Target Start/End: Complemental strand, 50655037 - 50654700
Alignment:
| Q |
23 |
atcatcaatcatatcccaatattcat--gactgagaaagatagaaatcaatatcttagnnnnnnnnnnnnnnnngttgagggaaaatcaatatcatagtg |
120 |
Q |
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|||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
50655037 |
atcatcaatcatatcccaatattcatatgattgagaaagatagaaatcaatatcttagtttttttttt-------ttgagggaaaatcaatatcatagtg |
50654945 |
T |
|
| Q |
121 |
actgaatcattttgcaattcataagtaacattcattagtctttttagcatagtataagtttcctcacttgaactgattggtttgctctcaaatgatacaa |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
50654944 |
actgaatcattttgcaattcataagtaacattcattagtctttttagcatagtataattttcctcacttgaactaattggtttgctctcaaatgatacaa |
50654845 |
T |
|
| Q |
221 |
tcttcttaattacagattccaattttatgtggactaacagatccttagttcgggttaatggtttttgttgaactataggttttggattttatttggttgc |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
50654844 |
tcttcttaattacagattccaattttatgtggactaacagatccttagttcgggttattggtttttgttgaactataggttttggattttatttggttgc |
50654745 |
T |
|
| Q |
321 |
ataaattgttgtcttgaattcctgtttacccattatttgttatta |
365 |
Q |
| |
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||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
50654744 |
ataaattgttgtcgtgaattcctgttcacccattatttgttatta |
50654700 |
T |
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