View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0769_low_19 (Length: 375)
Name: NF0769_low_19
Description: NF0769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0769_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 35 - 348
Target Start/End: Complemental strand, 31784987 - 31784674
Alignment:
| Q |
35 |
caatttcaacactctatcatcaagggaatcaaaatcatatggtttaaaaacaactgtttcatcaacctgattattcaaatcttgcaaccaaaggttttgg |
134 |
Q |
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| T |
31784987 |
caatttcaacactctatcatcaagggaatcaaaatcatatggtttaaaaacaactgtttcatcaacctgattatacaaatcttgcaaccaaaggttttgg |
31784888 |
T |
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| Q |
135 |
ttctcagttgagacatgttcaaagttttcatcatctgtttgtttctgttcattctcttcagctggaagattctaatctaaaagccggtttgatgttgtat |
234 |
Q |
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| T |
31784887 |
ttctcagttgagacatgttcaaagtttccatcatctgtctgtttctgttcattctcttcagctggaagattcaaatctaaaagccggtttgatgttgtat |
31784788 |
T |
|
| Q |
235 |
gcgcctttttagccgtatctgcaagtaaatagggatcatgaagttcattgtcaccaatcaattttcgtttgtttatgaaatttagattaggaatgacatt |
334 |
Q |
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| T |
31784787 |
gtgcccttttagccgcatctgcgagtaaatggggatcgtgaagttcattgtcaccaatcaattttcgtttgtttatgaaatttagattaggaatgatgtt |
31784688 |
T |
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| Q |
335 |
tattgaattgttag |
348 |
Q |
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| T |
31784687 |
tattgaattgttag |
31784674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 267 - 352
Target Start/End: Original strand, 19631618 - 19631703
Alignment:
| Q |
267 |
ggatcatgaagttcattgtcaccaatcaattttcgtttgtttatgaaatttagattaggaatgacatttattgaattgttagctac |
352 |
Q |
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| T |
19631618 |
ggatcgtgaagttcattgtcaccaatcaattttcgtttgtttatgaaatttagattaggaatgacatttattgaattgttagctac |
19631703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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