View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0769_low_2 (Length: 590)
Name: NF0769_low_2
Description: NF0769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0769_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 29 - 582
Target Start/End: Original strand, 35204173 - 35204726
Alignment:
| Q |
29 |
aacttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtgcatgacaggttttatca |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35204173 |
aacttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtgcatgacaggttttatca |
35204272 |
T |
|
| Q |
129 |
acaaacactcatatattttcttggttccaacttccaatattcatactcctattacannnnnnnnnnactctatcttttaacaattatccnnnnnnnnnta |
228 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| || |
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| T |
35204273 |
acaaacactcatatattttcttggttccaacttccaatattcatactcctattacatttttttttcactctatcttttgacaattatccaaaaaaaaata |
35204372 |
T |
|
| Q |
229 |
ttgaaaatgtgggactgtatattaacctagttctatatattataatttcttttttaggggattataattttagaatgttccgtgaatggtaaaatattaa |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35204373 |
ttgaaaatgtgggactgtatattaacctagttctatatattataatttcttttttaggggattataattttagaatgttccgtgaatggcaaaatattaa |
35204472 |
T |
|
| Q |
329 |
ttaaattcgtctctccattgatacttatagaagttttaaagaaatttggttgnnnnnnntcaagatgtggagacgaatttgattaatattttgcaatgtc |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35204473 |
ttaaattcgtctctccattgatacttatagaagttttaaagaaatttgattgaaaaaaatcaagatgtggagacgaatttgattaatattttgcaatgtc |
35204572 |
T |
|
| Q |
429 |
gacccattttagaatattaacaatgtgatgaatttagttgttacggtcttacaattctatggacaaaattggatatttactccttgttttccctccacgt |
528 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35204573 |
gacccattttaaaatattaacaatgtgatgaatttagttgttacggtcttacaattctatggacaaaattggatatttactccttgttttccctccactt |
35204672 |
T |
|
| Q |
529 |
catctactgcatctatgatttaatttctctgcgtctgtgtttttcattcttttc |
582 |
Q |
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|||||||||||||||||||||||||||||| | | | ||||||||||||||||| |
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| T |
35204673 |
catctactgcatctatgatttaatttctcttcttttttgtttttcattcttttc |
35204726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 29 - 184
Target Start/End: Complemental strand, 55859453 - 55859306
Alignment:
| Q |
29 |
aacttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtgcatgacaggttttatca |
128 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||| |
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| T |
55859453 |
aacttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccatagtgctagg----tgacaggtttcatc- |
55859359 |
T |
|
| Q |
129 |
acaaacactcatatattttcttggttccaacttccaatattcatactcctattaca |
184 |
Q |
| |
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|||| | |||||||||||||||||||| ||| ||||||||||||||| ||||| |
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|
| T |
55859358 |
---aacattgatatattttcttggttccaatttcaaatattcatactcctcttaca |
55859306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 29 - 184
Target Start/End: Original strand, 3822574 - 3822721
Alignment:
| Q |
29 |
aacttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtgcatgacaggttttatca |
128 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||| ||||||| |||||||||| ||| |
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| T |
3822574 |
aacttatatgctgtcatttagtggcagggaacatattatcatctatattcaattcaggtgcctagaaactatagtgctagg----tgacaggtttcatc- |
3822668 |
T |
|
| Q |
129 |
acaaacactcatatattttcttggttccaacttccaatattcatactcctattaca |
184 |
Q |
| |
|
|||| | |||||||||||||||||||| ||| ||||||||||||||| ||||| |
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|
| T |
3822669 |
---aacattgatatattttcttggttccaatttctaatattcatactcctcttaca |
3822721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 46267428 - 46267346
Alignment:
| Q |
29 |
aacttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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|
| T |
46267428 |
aacttatatgttgtcatttagtggcagggaacatttcatcatctatattcaatgcaggtgcctagaaaccatagtgctaggtg |
46267346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 46267337 - 46267293
Alignment:
| Q |
140 |
tatattttcttggttccaacttccaatattcatactcctattaca |
184 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||| ||||| |
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| T |
46267337 |
tatattttcttggttccaatttctaatattcatactcctcttaca |
46267293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 29 - 184
Target Start/End: Original strand, 29275145 - 29275292
Alignment:
| Q |
29 |
aacttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtgcatgacaggttttatca |
128 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||| |||| |
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|
| T |
29275145 |
aacttatatgttgtcatttagtggcaaggaacatttcatcatctatattcaattcaggtgactagaaaccatagtgctagg----tgacaggtttcatca |
29275240 |
T |
|
| Q |
129 |
acaaacactcatatattttcttggttccaacttccaatattcatactcctattaca |
184 |
Q |
| |
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||| | |||| |||| |||||||||| ||| |||||||| |||||| ||||| |
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| T |
29275241 |
acata----gatatttttttttggttccaatttcaaatattcacactcctcttaca |
29275292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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