View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0769_low_23 (Length: 351)
Name: NF0769_low_23
Description: NF0769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0769_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 12 - 286
Target Start/End: Original strand, 28073769 - 28074043
Alignment:
| Q |
12 |
agagagcgtcggagaagatggaagttcggttatgttatcagaaggggatgcttgtggtgaagaacttctaagatggtatcttgaacagtcttctgaaagc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28073769 |
agagagcgtcggagaagatggaagttcggttatgttatcagaaggggatgcttgtggtgaagaacttctaagatggtatcttgaacagtcttctgaaagc |
28073868 |
T |
|
| Q |
112 |
aaaggtataactatacttaatataatgataacatgcctcaaaagaagtagcaataatcatctggcatagcctgctagaaactaaaatacatgtttcatca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28073869 |
aaaggtataactatacttaatataatgataacatgcctcaaaagaagtagcaataatcatctggcatagcctgctagaaactaaaatacatgtttcatca |
28073968 |
T |
|
| Q |
212 |
atatggtttattagaaaatacagaaattagttagacttcacttcagtttgttagttagttaggattttagttagt |
286 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28073969 |
atatggtttattagaaaatacagaaattagttagacttcacttcagtttgttagttagttaggattttagttagt |
28074043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 28090696 - 28090842
Alignment:
| Q |
13 |
gagagcgtcggagaagatggaagttcggttatgttatcagaaggggatgcttgtggtgaagaacttctaagatggtatcttgaacagtcttctgaaagca |
112 |
Q |
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|||||||||||||| ||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28090696 |
gagagcgtcggagaggatggaattccggttccgttatcagaaggggatgcttgtggtgaagaacttctaagatggtatcttgaacagtcttctgaaagca |
28090795 |
T |
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| Q |
113 |
aaggtataactatacttaatataatgataacatgcctcaaaagaagt |
159 |
Q |
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|||||| |||||||||| |||||||||||||||||||| |||||||| |
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| T |
28090796 |
aaggtacaactatacttgatataatgataacatgcctccaaagaagt |
28090842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 28016655 - 28016883
Alignment:
| Q |
13 |
gagagcgtcggagaagatggaagttcggttatgttatcagaaggggatgcttgtggtgaagaacttctaagatggtatcttgaacagtcttctgaaagca |
112 |
Q |
| |
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|||||| ||||| ||||||||| | ||||| ||||||| ||||||||||||| |||||| || ||||||| |||||||||||||| |||||||||||||| |
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| T |
28016655 |
gagagcatcggaaaagatggaattccggttttgttatccgaaggggatgcttttggtgaggagcttctaatatggtatcttgaacggtcttctgaaagca |
28016754 |
T |
|
| Q |
113 |
aaggtataactatacttaatataatgataacatgcctcaaaagaagtagcaataatcatctggcatagcctgctagaaactaaaatacatgtttcatcaa |
212 |
Q |
| |
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|||||| ||||||| |||||||| |||||| ||| ||||||||||||||||||| | ||||||| |||||||| | | |||||||||||||| |
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| T |
28016755 |
aaggtacaactata---------atgataacttgcctcgaaa-aagtagcaataatcatctgacctagcctggtagaaactgagaaacatgtttcatcaa |
28016844 |
T |
|
| Q |
213 |
tatggtttattagaaaatacagaaattagttagacttca |
251 |
Q |
| |
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|||||||||||||||| | ||||||||||||||||||| |
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| T |
28016845 |
tatggtttattagaaattgtagaaattagttagacttca |
28016883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 13 - 183
Target Start/End: Original strand, 28001107 - 28001277
Alignment:
| Q |
13 |
gagagcgtcggagaagatggaagttcggttatgttatcagaaggggatgcttgtggtgaagaacttctaagatggtatcttgaacagtcttctgaaagca |
112 |
Q |
| |
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|||||| ||||||||||||||| | |||||| |||| | ||||||||||||||||||||||| |||||| ||||||||||||||| |||||| |||||| |
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| T |
28001107 |
gagagcatcggagaagatggaattccggttacgttaactgaaggggatgcttgtggtgaagagcttctacgatggtatcttgaacgatcttctaaaagca |
28001206 |
T |
|
| Q |
113 |
aaggtataactatacttaatataatgataacatgcctcaaaagaagtagcaataatcatctggcatagcct |
183 |
Q |
| |
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|||||||| ||||| || ||||||||||||||||||||||||||||||| ||||||||| |||||| |||| |
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| T |
28001207 |
aaggtatagctatatttgatataatgataacatgcctcaaaagaagtagtaataatcatatggcatggcct |
28001277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 28034440 - 28034648
Alignment:
| Q |
13 |
gagagcgtcggagaagatggaagttcggttatgttatcagaaggggatgcttgtggtgaagaacttctaagatggtatcttgaacagtcttctgaaagca |
112 |
Q |
| |
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|||||| | ||| |||||| || | ||||| ||||||| ||||||||||||| ||||||||| ||||||| ||||||||||||||||||| || |||| | |
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| T |
28034440 |
gagagcattggaaaagatgaaattccggttctgttatcggaaggggatgcttctggtgaagagcttctaacatggtatcttgaacagtctgctaaaagta |
28034539 |
T |
|
| Q |
113 |
aaggtataactatacttaatataatgataacatgcctcaaaagaagtagcaataatcatctggcatagcctgctagaaactaaaatacatgtttcatcaa |
212 |
Q |
| |
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|||||| |||||||||| |||||| |||||||||||||||||||||||||| | ||||||| ||||||| |||||||| | | |||||||||||||| |
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| T |
28034540 |
aaggtacaactatacttgatataacgataacatgcctcaaaagaagtagcagttatcatctaatatagcctcatagaaactgagaaacatgtttcatcaa |
28034639 |
T |
|
| Q |
213 |
tatggttta |
221 |
Q |
| |
|
||||||||| |
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| T |
28034640 |
tatggttta |
28034648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 47 - 249
Target Start/End: Original strand, 27916118 - 27916321
Alignment:
| Q |
47 |
tatcagaaggggatgcttgtggtgaagaacttctaagatggtatcttgaacagtcttctgaaagcaaaggtataactatacttaatataatgataacatg |
146 |
Q |
| |
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|||| |||||||||| |||||||||||| ||||||| | ||| |||||| |||||||||||||| ||||||| || ||||||| |||||||||||||||| |
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| T |
27916118 |
tatctgaaggggatgtttgtggtgaagagcttctaatacggtttcttgagcagtcttctgaaagaaaaggtacaagtatacttgatataatgataacatg |
27916217 |
T |
|
| Q |
147 |
cctcaaaagaagtagcaataatcatctggcatagc-ctgctagaaactaaaatacatgtttcatcaatatggtttattagaaaatacagaaattagttag |
245 |
Q |
| |
|
|||||||||||||||||||||| |||||| || || | |||||| | | ||||||| ||||||||| |||||||||||| || ||||||||||||| |
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| T |
27916218 |
cctcaaaagaagtagcaataataatctggtatggcattaatagaaaaggagaaacatgttccatcaatatagtttattagaaattatagaaattagttag |
27916317 |
T |
|
| Q |
246 |
actt |
249 |
Q |
| |
|
|||| |
|
|
| T |
27916318 |
actt |
27916321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 121
Target Start/End: Original strand, 28533239 - 28533314
Alignment:
| Q |
46 |
ttatcagaaggggatgcttgtggtgaagaacttctaagatggtatcttgaacagtcttctgaaagcaaaggtataa |
121 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| | ||||||||||||||| ||||| | |||||||||||||| |
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|
| T |
28533239 |
ttatctgaaggagatgcttgtggtgaagaacttcttacatggtatcttgaacaatcttcagtaagcaaaggtataa |
28533314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 1439372 - 1439500
Alignment:
| Q |
13 |
gagagcgtcggagaagatggaagttcggttatgttatcagaaggggatgcttgtggtgaagaacttctaagatggtatcttgaacagtcttctgaaagca |
112 |
Q |
| |
|
|||||| ||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
1439372 |
gagagcatcggagaagatggaattccggttccattatcagaaggggatgcttgtggtgaagaacttctaagatggtatcttgaacagtctgttgaaagca |
1439471 |
T |
|
| Q |
113 |
aaggtataactatacttaatataatgata |
141 |
Q |
| |
|
|||||| |||||||||| ||||||||||| |
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|
| T |
1439472 |
aaggtacaactatacttgatataatgata |
1439500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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