View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0769_low_24 (Length: 339)
Name: NF0769_low_24
Description: NF0769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0769_low_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 178 - 328
Target Start/End: Complemental strand, 1915419 - 1915269
Alignment:
| Q |
178 |
ccaatcactttgccaacaatattccctttcttttctccaccaccttcaaaaaccaacccttgaagttcatgtcaagtgtgttttatagatatatttatca |
277 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1915419 |
ccaaacactttgccgacaatattccctttcttttctccaccaccttcaaaaaccaacccttgaagttcatgtcaagtgtgttttatagatatatttatca |
1915320 |
T |
|
| Q |
278 |
tattatacattattcattagttgttgggtgtgtgtcatatatcgccttcat |
328 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1915319 |
tattatacattgttcattagttgttgggtgtgtgtcatatatcgccttcat |
1915269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 1915548 - 1915442
Alignment:
| Q |
1 |
cttcagacaacaaatccaaccacacctacacttccaaaaccaacattgc---cacctttgccaacaatccctgcagcattgccaaaacctactcagccat |
97 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1915548 |
cttcagacaacaaatccaactacacctacacttccaaaaccaacattgctgccacctttgccaacaatccctgcagcattgccaaaacctactcagccat |
1915449 |
T |
|
| Q |
98 |
ctattcc |
104 |
Q |
| |
|
||||||| |
|
|
| T |
1915448 |
ctattcc |
1915442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 163
Target Start/End: Complemental strand, 1915452 - 1915413
Alignment:
| Q |
124 |
ccatctattccacagttcaatcttccaccacttccaaaca |
163 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
1915452 |
ccatctattccccagttcactcttccaccacttccaaaca |
1915413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4438 times since January 2019
Visitors: 4835