View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0769_low_31 (Length: 304)
Name: NF0769_low_31
Description: NF0769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0769_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 24 - 157
Target Start/End: Original strand, 1718167 - 1718300
Alignment:
| Q |
24 |
tcttaagtacaaatgtggtggcataatccatgaatctaagcatttaaataaccaatgttcgtcatctttagctggttataaaaagatattaccactgaag |
123 |
Q |
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| T |
1718167 |
tcttaggtacaagtgtggtggcataatccatgaatctaagcatttaaataaccaatgttcgtcatctttagctggttatgaaaagatattaccactgaag |
1718266 |
T |
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| Q |
124 |
aggtcaatttcaaaagataacatcgaactttcaa |
157 |
Q |
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| T |
1718267 |
aggtcaatttcaaaagataacatcgaactttcaa |
1718300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 155 - 286
Target Start/End: Original strand, 1718331 - 1718462
Alignment:
| Q |
155 |
caaatgggagagaagaagcaagatgcaaaaacttttctatcagnnnnnnngttgctccgaacaacaatgtaactgctgcgcagcaatattctcagtttca |
254 |
Q |
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| T |
1718331 |
caaatgggagagaagaagcaagatgcaaaaacttttctatcagaaaaaaagttactccgaacaacaatgtaactgctgcgcagcaatattctcagtttca |
1718430 |
T |
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| Q |
255 |
ctcggatatggctgctcaagcagacgctaaag |
286 |
Q |
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| T |
1718431 |
ctcggatatggctgctcaagcagacgctaaag |
1718462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 157
Target Start/End: Original strand, 26648112 - 26648243
Alignment:
| Q |
29 |
agtacaaatgtggtggcataatccatgaatctaagcatttaaataaccaa---tgttcgtcatctttagctggttataaaaagatattaccactgaagag |
125 |
Q |
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| T |
26648112 |
agtacaagtgtggtggcaaaatccatgaatctaagcatttattggaccaaagttgttcagcctcttcagcatattatgaaaagatattaccactgaaaag |
26648211 |
T |
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| Q |
126 |
gtcaatttcaaaagataacatcgaactttcaa |
157 |
Q |
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| T |
26648212 |
gccagtttcagtagataacattgaactttcaa |
26648243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 286
Target Start/End: Complemental strand, 20007089 - 20007049
Alignment:
| Q |
246 |
tcagtttcactcggatatggctgctcaagcagacgctaaag |
286 |
Q |
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| T |
20007089 |
tcagtttcactctgatatggctgctcaagcagaagctaaag |
20007049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 19952284 - 19952340
Alignment:
| Q |
99 |
ttataaaaagatattaccactgaagaggtcaatttcaaaagataacatcgaactttc |
155 |
Q |
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| T |
19952284 |
ttatgaaaagatattaccactgaaaaggccagtttcgaaagatagcattgaactttc |
19952340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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