View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0769_low_33 (Length: 300)
Name: NF0769_low_33
Description: NF0769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0769_low_33 |
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| [»] scaffold0018 (1 HSPs) |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 30 - 291
Target Start/End: Complemental strand, 34210296 - 34210035
Alignment:
| Q |
30 |
ctatgaaagacttcaagataaggggtttgaagtctcatgattgccatgttttgatggaacacatgttaccgataggtatacgttccatttttcctgaaaa |
129 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
34210296 |
ctatgaaagacctcaagataaggggtttgaagtctcatgattgccatgttttgatggaacacatgttaccaataggtatacgttccattttgcctgaaaa |
34210197 |
T |
|
| Q |
130 |
cgttagaagtgcaatcactaaactttgttttttcttcagggtgatttgtagtaaagtgatcaatccaaagagaatacaaacattacaaagagaaattagt |
229 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||| |
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| T |
34210196 |
cgttagaagtgcaatcactaaactttgtttcttcttcagggcgatttgtagtaaagtgatcaatccagagagcttacaaacattgcaaagagaaattagt |
34210097 |
T |
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| Q |
230 |
cttactttgtgtgagcttgagatgtacttcccaccctcattttttgacattatggttcatct |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34210096 |
gttactttgtgtgagcttgagatgtacttcccaccctcattttttgacattatggttcatct |
34210035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 30 - 291
Target Start/End: Complemental strand, 14651880 - 14651619
Alignment:
| Q |
30 |
ctatgaaagacttcaagataaggggtttgaagtctcatgattgccatgttttgatggaacacatgttaccgataggtatacgttccatttttcctgaaaa |
129 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
14651880 |
ctatgaaagacctcaagataaggggtttgaagtctcatgattgccatgttttgatggaacacatgttaccaataggtatacgttccattttgcctgaaaa |
14651781 |
T |
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| Q |
130 |
cgttagaagtgcaatcactaaactttgttttttcttcagggtgatttgtagtaaagtgatcaatccaaagagaatacaaacattacaaagagaaattagt |
229 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||| |
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| T |
14651780 |
cgttagaagtgcaatcactaaactttgtttcttcttcagggcgatttgtagtaaagtgatcaatccagagagcttacaaacattgcaaagagaaattagt |
14651681 |
T |
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| Q |
230 |
cttactttgtgtgagcttgagatgtacttcccaccctcattttttgacattatggttcatct |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14651680 |
gttactttgtgtgagcttgagatgtacttcccaccctcattttttgacattatggttcatct |
14651619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 30 - 291
Target Start/End: Complemental strand, 128920 - 128659
Alignment:
| Q |
30 |
ctatgaaagacttcaagataaggggtttgaagtctcatgattgccatgttttgatggaacacatgttaccgataggtatacgttccatttttcctgaaaa |
129 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
128920 |
ctatgaaagacctcaagataaggggtttgaagtctcatgattgccatgttttgatggaacacatgttaccaataggtatacgttccattttgcctgaaaa |
128821 |
T |
|
| Q |
130 |
cgttagaagtgcaatcactaaactttgttttttcttcagggtgatttgtagtaaagtgatcaatccaaagagaatacaaacattacaaagagaaattagt |
229 |
Q |
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|
|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| | |||| |||||||||| ||||||||||||||| |
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| T |
128820 |
cgttagaagtgcaatcactaaactttgtttcttcttcagggcaatttgtagtaaagtgatcaatctagagagcttacaaacattgcaaagagaaattagt |
128721 |
T |
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| Q |
230 |
cttactttgtgtgagcttgagatgtacttcccaccctcattttttgacattatggttcatct |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
128720 |
gttactttgtgtgagcttgagatgtacttcccaccctcattttttgacattatggttcatct |
128659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 138976 - 139028
Alignment:
| Q |
239 |
tgtgagcttgagatgtacttcccaccctcattttttgacattatggttcatct |
291 |
Q |
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||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||| |
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| T |
138976 |
tgtgagcttgagatgtatttccccccctctttttttgacataatggttcatct |
139028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 20750103 - 20750155
Alignment:
| Q |
239 |
tgtgagcttgagatgtacttcccaccctcattttttgacattatggttcatct |
291 |
Q |
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||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||| |
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| T |
20750103 |
tgtgagcttgagatgtatttccccccctctttttttgacataatggttcatct |
20750155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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