View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0769_low_4 (Length: 555)

Name: NF0769_low_4
Description: NF0769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0769_low_4
NF0769_low_4
[»] chr1 (3 HSPs)
chr1 (12-251)||(1718061-1718300)
chr1 (249-458)||(1718331-1718540)
chr1 (69-115)||(38483819-38483865)
[»] chr3 (16 HSPs)
chr3 (18-122)||(26647851-26647955)
chr3 (24-119)||(26654001-26654096)
chr3 (48-122)||(20033501-20033575)
chr3 (45-121)||(19951998-19952074)
chr3 (24-115)||(20015375-20015466)
chr3 (12-114)||(20007447-20007549)
chr3 (46-100)||(19849871-19849925)
chr3 (64-122)||(20006421-20006479)
chr3 (340-398)||(20007031-20007089)
chr3 (362-440)||(26648411-26648489)
chr3 (45-122)||(20035770-20035847)
chr3 (124-251)||(26648113-26648243)
chr3 (45-114)||(19813157-19813226)
chr3 (58-122)||(19956971-19957035)
chr3 (340-402)||(17115339-17115401)
chr3 (193-249)||(19952284-19952340)
[»] chr5 (4 HSPs)
chr5 (38-122)||(26354094-26354178)
chr5 (45-115)||(9815908-9815978)
chr5 (310-440)||(26353656-26353786)
chr5 (64-114)||(27472660-27472710)
[»] chr8 (1 HSPs)
chr8 (48-122)||(22685507-22685581)
[»] chr7 (2 HSPs)
chr7 (46-110)||(12582137-12582201)
chr7 (46-110)||(12521888-12521952)
[»] scaffold0038 (1 HSPs)
scaffold0038 (74-113)||(19562-19601)
[»] chr6 (1 HSPs)
chr6 (74-113)||(28219064-28219103)


Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 1718061 - 1718300
Alignment:
Q  12 agagacgtgcatgttcaacgaaacctagagctgatgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgt 111  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1718061 agagatgtgcatgttcaacgaaacctagagctgatgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgt 1718160  T
Q  112 tgacactcttaggtacaaatgtggtggcataatccatgaatctaagcatttaaataaccaatgttcgtcatctttagctggttataaaaagatattacca 211  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1718161 tgacactcttaggtacaagtgtggtggcataatccatgaatctaagcatttaaataaccaatgttcgtcatctttagctggttatgaaaagatattacca 1718260  T
Q  212 ctgaagaggtcaatttcaaaagataacatcgaactttcaa 251  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1718261 ctgaagaggtcaatttcaaaagataacatcgaactttcaa 1718300  T

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Target: chr1; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 249 - 458
Target Start/End: Original strand, 1718331 - 1718540
Alignment:
Q  249 caaatgggagagaagaagcaagatgcaaaaacttttctatcagnnnnnnngttgctccgaacaacaatgtaactgctgcgcagcaatattctcagtttca 348  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1718331 caaatgggagagaagaagcaagatgcaaaaacttttctatcagaaaaaaagttactccgaacaacaatgtaactgctgcgcagcaatattctcagtttca 1718430  T
Q  349 ctcggatatggctgctcaagcagacgctaaagaaacagctgaagaaaaaggaagggaagcaagagatgatgaagttatggttttgttaaaagtggaatgc 448  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1718431 ctcggatatggctgctcaagcagacgctaaagaaacagctgaagaaaaagaaagggaagcaagagatgatgaagttatggttttgttaaaagaggaatgc 1718530  T
Q  449 atgaagaatc 458  Q
    ||||||||||    
T  1718531 atgaagaatc 1718540  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 115
Target Start/End: Original strand, 38483819 - 38483865
Alignment:
Q  69 gtaatgatgttggtgttccacctggatttcctcccaatcttgttgac 115  Q
    |||||||||||||||||||||||| |||||||||  |||||||||||    
T  38483819 gtaatgatgttggtgttccacctgaatttcctccagatcttgttgac 38483865  T

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Target: chr3 (Bit Score: 65; Significance: 3e-28; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 26647851 - 26647955
Alignment:
Q  18 gtgcatgttcaacgaaacctagagctgatgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgacac 117  Q
    ||||| |||||| ||||| ||||| |  ||||||||||| ||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  26647851 gtgcaagttcaaggaaacatagagtttgtgtaggaaaagataacataagtggtaatgatgttggtgttccccctggttttcctcccaatcttgttgacac 26647950  T
Q  118 tctta 122  Q
    |||||    
T  26647951 tctta 26647955  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 26654001 - 26654096
Alignment:
Q  24 gttcaacgaaacctagagctgatgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgacactc 119  Q
    |||||| ||||||||||||| ||||||| ||||||| ||||||||||   ||| || |||||||||||||||||||||||||||||||||||||||    
T  26654001 gttcaaggaaacctagagctcatgtagggaaagctagcaaaagtggtgtcgattttagtgttccacctggatttcctcccaatcttgttgacactc 26654096  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 20033575 - 20033501
Alignment:
Q  48 taggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgacactctta 122  Q
    ||||||| |||||| ||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  20033575 taggaaatgctaacgaaagtagtaatgatgatggtgttgcacctggatttcctcccaatcttgttgacactctta 20033501  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 19951998 - 19952074
Alignment:
Q  45 atgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgacactctt 121  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||  |||||| ||||||    
T  19951998 atgtaggaaaagctaacataagtggtaatgttgttggtgttccacctggatttcctaccaattgtgttgaaactctt 19952074  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 20015466 - 20015375
Alignment:
Q  24 gttcaacgaaacctagagctgatgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgac 115  Q
    |||||| ||||| |||| || || |||||||| |||||| |||  |||||||||||||||||||||||||||||  ||||||||||||||||    
T  20015466 gttcaaggaaacatagacctcatctaggaaaaactaacagaagcagtaatgatgttggtgttccacctggattttgtcccaatcttgttgac 20015375  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 20007549 - 20007447
Alignment:
Q  12 agagacgtgcatgttcaacgaaacctagagctgatgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgt 111  Q
    ||||| |||||  ||||| || || |||| || |||||||| || |||||| |||| | | |||||||||||||||||||||||||||||||||||||||    
T  20007549 agagaagtgcaatttcaaggagacatagatctcatgtaggacaatctaacagaagttggattgatgttggtgttccacctggatttcctcccaatcttgt 20007450  T
Q  112 tga 114  Q
    |||    
T  20007449 tga 20007447  T

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Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 19849871 - 19849925
Alignment:
Q  46 tgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcct 100  Q
    ||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||    
T  19849871 tgtaggaaaagctaacagaagtggtaatgatgttggttttccacttggatttcct 19849925  T

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Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 20006479 - 20006421
Alignment:
Q  64 aagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgacactctta 122  Q
    |||||||| ||||||||||||||||  ||||||||||||||||||||||| ||||||||    
T  20006479 aagtggtattgatgttggtgttccagatggatttcctcccaatcttgttggcactctta 20006421  T

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Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 340 - 398
Target Start/End: Complemental strand, 20007089 - 20007031
Alignment:
Q  340 tcagtttcactcggatatggctgctcaagcagacgctaaagaaacagctgaagaaaaag 398  Q
    |||||||||||| |||||||||||||||||||| ||||||||||| | |||||||||||    
T  20007089 tcagtttcactctgatatggctgctcaagcagaagctaaagaaacggttgaagaaaaag 20007031  T

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Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 362 - 440
Target Start/End: Original strand, 26648411 - 26648489
Alignment:
Q  362 gctcaagcagacgctaaagaaacagctgaagaaaaaggaagggaagcaagagatgatgaagttatggttttgttaaaag 440  Q
    ||||||||| | ||||||||| | | |||||||||||||||| ||| ||| ||| |||||||| |||||||||||||||    
T  26648411 gctcaagcacaagctaaagaagcggttgaagaaaaaggaaggaaagaaagtgatcatgaagttgtggttttgttaaaag 26648489  T

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Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 20035847 - 20035770
Alignment:
Q  45 atgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgacactctta 122  Q
    |||||||||||   ||||||||||||| ||| ||| ||||||  ||||||||| |||||||||||||||| |||||||    
T  20035847 atgtaggaaaattaaacaaaagtggtattgaagtttgtgttcagcctggattttctcccaatcttgttgatactctta 20035770  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 251
Target Start/End: Original strand, 26648113 - 26648243
Alignment:
Q  124 gtacaaatgtggtggcataatccatgaatctaagcatttaaataaccaa---tgttcgtcatctttagctggttataaaaagatattaccactgaagagg 220  Q
    |||||| |||||||||| ||||||||||||||||||||||    |||||   |||||  | |||| |||   |||| ||||||||||||||||||| |||    
T  26648113 gtacaagtgtggtggcaaaatccatgaatctaagcatttattggaccaaagttgttcagcctcttcagcatattatgaaaagatattaccactgaaaagg 26648212  T
Q  221 tcaatttcaaaagataacatcgaactttcaa 251  Q
     || |||||  ||||||||| ||||||||||    
T  26648213 ccagtttcagtagataacattgaactttcaa 26648243  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 19813157 - 19813226
Alignment:
Q  45 atgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttga 114  Q
    |||||||||||  | ||| |||||||| || || || ||||||||||| |||||||||||||||||||||    
T  19813157 atgtaggaaaatttgacagaagtggtattggtgctgctgttccacctgaatttcctcccaatcttgttga 19813226  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 19956971 - 19957035
Alignment:
Q  58 taacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgacactctta 122  Q
    ||||| ||||||||  || ||| |||||| |||||||||| |||||||||||||||| |||||||    
T  19956971 taacagaagtggtatggaggtttgtgttcaacctggattttctcccaatcttgttgatactctta 19957035  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 402
Target Start/End: Original strand, 17115339 - 17115401
Alignment:
Q  340 tcagtttcactcggatatggctgctcaagcagacgctaaagaaacagctgaagaaaaaggaag 402  Q
    |||||||||||| |||||||||||| ||||||| ||||  ||||||| |||||  ||||||||    
T  17115339 tcagtttcactccgatatggctgctaaagcagaagctatggaaacagttgaagggaaaggaag 17115401  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 19952284 - 19952340
Alignment:
Q  193 ttataaaaagatattaccactgaagaggtcaatttcaaaagataacatcgaactttc 249  Q
    |||| ||||||||||||||||||| ||| || |||| ||||||| ||| ||||||||    
T  19952284 ttatgaaaagatattaccactgaaaaggccagtttcgaaagatagcattgaactttc 19952340  T

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Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 26354178 - 26354094
Alignment:
Q  38 agagctgatgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgacactctta 122  Q
    |||||| |||| |||||| |||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26354178 agagctcatgttggaaaaactaacagaagtattaatgatgttggtgttccacctggatttcctcccaatcttgttgacattctta 26354094  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 9815908 - 9815978
Alignment:
Q  45 atgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgac 115  Q
    |||||||||||  | ||| |||| |||||||||||||| ||||||||| ||||||||||||||||||||||    
T  9815908 atgtaggaaaaattgacagaagttgtaatgatgttggttttccacctgaatttcctcccaatcttgttgac 9815978  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 440
Target Start/End: Complemental strand, 26353786 - 26353656
Alignment:
Q  310 caacaatgtaactgctgcgcagcaatattctcagtttcactcggatatggctgctcaagcagacgctaaagaaacagctgaagaaaaaggaagggaagca 409  Q
    |||||||||||||| | || ||||| ||  |||||||  | |||||||  ||||||||||||| ||||||||||| | ||||| | |||||||  ||| |    
T  26353786 caacaatgtaactgttacggagcaagatcttcagtttttcccggatatttctgctcaagcagaagctaaagaaacggttgaaggacaaggaagaaaagaa 26353687  T
Q  410 agagatgatgaagttatggttttgttaaaag 440  Q
    || ||| ||||| || |||||| ||||||||    
T  26353686 agtgatcatgaacttgtggtttggttaaaag 26353656  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 27472660 - 27472710
Alignment:
Q  64 aagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttga 114  Q
    |||||||||||||||||||||||||| |||||| |||  |||| |||||||    
T  27472660 aagtggtaatgatgttggtgttccacttggattccctttcaatgttgttga 27472710  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 22685581 - 22685507
Alignment:
Q  48 taggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgacactctta 122  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||| ||  |||||||||| |||| ||||    
T  22685581 taggaatagctaacagaagtggtaatgatgttggtgttccacctggattttctttcaatcttgttaacacactta 22685507  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 12582137 - 12582201
Alignment:
Q  46 tgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttg 110  Q
    ||||||||||||||||||||| |||| | ||||||||| ||  ||| |||||| |||||||||||    
T  12582137 tgtaggaaaagctaacaaaagcggtattcatgttggtggtcagcctagatttcgtcccaatcttg 12582201  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 12521888 - 12521952
Alignment:
Q  46 tgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttg 110  Q
    ||||||||||||||||||||| |||| | ||||||||| ||  ||| |||||| || ||||||||    
T  12521888 tgtaggaaaagctaacaaaagcggtattcatgttggtggtcagcctagatttcgtctcaatcttg 12521952  T

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Target: scaffold0038 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 113
Target Start/End: Complemental strand, 19601 - 19562
Alignment:
Q  74 gatgttggtgttccacctggatttcctcccaatcttgttg 113  Q
    ||||||||||||| ||||||||||||||||| ||||||||    
T  19601 gatgttggtgttctacctggatttcctcccattcttgttg 19562  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 113
Target Start/End: Complemental strand, 28219103 - 28219064
Alignment:
Q  74 gatgttggtgttccacctggatttcctcccaatcttgttg 113  Q
    ||||||||||||| ||||||||||||||||| ||||||||    
T  28219103 gatgttggtgttctacctggatttcctcccattcttgttg 28219064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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