View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0769_low_41 (Length: 270)
Name: NF0769_low_41
Description: NF0769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0769_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 41747744 - 41747488
Alignment:
| Q |
1 |
acattttgtagggtgtatccaagttcactgcttcacttgtgaagcaattgtcattaaatcttaaacgcattcaaagtttgggaataaataaaatagcaat |
100 |
Q |
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| T |
41747744 |
acattttgtagggtgtatccaagttcactgcttcacttgtgaagcaattgtcattaaatcttaaacgcattcaaagtttgggaataaataaaatagcaat |
41747645 |
T |
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| Q |
101 |
tgtattattagagcctataggatgtttgcctatagcaactgagaatacttcgtatgagaaatgcaatgggactttgaacacggtagccatgaatcacaat |
200 |
Q |
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| T |
41747644 |
tgtattattagagcctataggatgtttgcctatagcaactgagaatacttcgtatgagaaatgcaatgggactttgaacacggtagccatgaatcacaat |
41747545 |
T |
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| Q |
201 |
cacttgttactccaagctgtgaaagaactcaacaaagaaattggaaaatcggttttc |
257 |
Q |
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| T |
41747544 |
cacttgttactccaagctgtggaagaactcaacaaagaaattggaaaatcggttttc |
41747488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 23 - 257
Target Start/End: Complemental strand, 41739521 - 41739281
Alignment:
| Q |
23 |
gttcactgcttcacttgtgaagcaattgtcattaaatcttaaacgcattcaaagtttgggaataaataaaatagcaattgtattattagagcctatagga |
122 |
Q |
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| T |
41739521 |
gttcactgcatcacttgtgaatcaattatcatcaaatcttagacgcattcaaagcttgggaataaataaaatagcaattggattattagaacctataggg |
41739422 |
T |
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| Q |
123 |
tgtttgcctatagca------actgagaatacttcgtatgagaaatgcaatgggactttgaacacggtagccatgaatcacaatcacttgttactccaag |
216 |
Q |
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| T |
41739421 |
tgtttgcctatggtaaccgagactgagacaccttcatatgagaaatgcaatgacaatttcaacctatttgccatgaatcacaattacttgttgctccaag |
41739322 |
T |
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| Q |
217 |
ctgtgaaagaactcaacaaagaaattggaaaatcggttttc |
257 |
Q |
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| T |
41739321 |
ctgtggaagaacttaacaaggaaatgggaaaatcagttttc |
41739281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 41733603 - 41733512
Alignment:
| Q |
42 |
aagcaattgtcattaaatcttaaacgcattcaaagtttgggaataaataaaatagcaattgtattattagagcctataggatgtttgcctat |
133 |
Q |
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| T |
41733603 |
aagcaaatgtcattgaatctaaaacgtattcacgagttgggaataaacaaaatagcaattggtttattagagcctattggatgtgtgcctat |
41733512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 127
Target Start/End: Complemental strand, 41758369 - 41758297
Alignment:
| Q |
55 |
taaatcttaaacgcattcaaagtttgggaataaataaaatagcaattgtattattagagcctataggatgttt |
127 |
Q |
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| T |
41758369 |
taaatgttcaacgcatccacaatttgggaataaataaagtagcaattggattattggaaccaattggatgttt |
41758297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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