View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0769_low_42 (Length: 268)
Name: NF0769_low_42
Description: NF0769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0769_low_42 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 5807206 - 5807485
Alignment:
| Q |
1 |
acctccttttccttttgctctccctaattcgtcccaacttatccaatgaattttcctctgttgctctgtagatccccactaaaacttagagagcatgcct |
100 |
Q |
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| T |
5807206 |
acctccttttccttttgctctccctaatttgtcccaacttatccaatgaattttcctctgttgctctgtagatccccactaaaacttagagagcatgcct |
5807305 |
T |
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| Q |
101 |
tcaatattcgcgcaacatccttcccggatcttataacaactcatgatgtagctaagaatggctagtgccacagctctgaataaagtctccttac------ |
194 |
Q |
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| T |
5807306 |
tcaatatttgcgcaacatccttcccggatcttatagcaactcatgatgtagctaagaatggctagtgccacagctctaaataaagtctccttacctgcgt |
5807405 |
T |
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| Q |
195 |
------aatatttctctttccaacccttgactttcttctgtatcctgtcttgaacaaaagcaaacatttcttttttggat |
268 |
Q |
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| T |
5807406 |
tggataaatatttctctttccaacccttgactttcttctgtagcctgtcttgaacaaaaacaaacacttcttttttggat |
5807485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 147
Target Start/End: Complemental strand, 39487556 - 39487412
Alignment:
| Q |
2 |
cctccttttccttttgctctccctaattcgtcccaacttatccaatgaattttcctctgttgctctgtagatccccactaaaacttagagagcatgcctt |
101 |
Q |
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| T |
39487556 |
cctcctttgctttttgctcttcctaaccgatcccaactcatccagtgaattttcctttgttgctct-tagaaccccaccaaaatttagataacatgcttt |
39487458 |
T |
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| Q |
102 |
caatattcgcgcaacatccttcccggatcttataacaactcatgat |
147 |
Q |
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| T |
39487457 |
caatattagtgcagcacccttctggaatcttgtaacaactcatgat |
39487412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 174
Target Start/End: Complemental strand, 46033679 - 46033507
Alignment:
| Q |
2 |
cctccttttccttttgctctccctaattcgtcccaacttatccaatgaattttcctctgttgctctgtagatccccactaaaacttagagagcatgcctt |
101 |
Q |
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|||||||| | ||||||||| ||||| |||||||| ||||| ||||||||||| |||||||||||||| |||||| | || ||||| | ||||| || |
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| T |
46033679 |
cctcctttgctttttgctcttcctaaccgatcccaactcatccagtgaattttcctttgttgctctgtagaaccccaccagaatttagataacatgcttt |
46033580 |
T |
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| Q |
102 |
caatattcgcgcaacatccttcccggatcttataacaactcatgatgtagctaagaatggctagtgccacagc |
174 |
Q |
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| T |
46033579 |
caatattagtgcagcacccttttggaatcttgcaacaactcatgatataactagggatcgcttgtgccacagc |
46033507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 268
Target Start/End: Complemental strand, 46033469 - 46033401
Alignment:
| Q |
200 |
ttctctttccaacccttgactttcttctgtatcctgtcttgaacaaaagcaaacatttcttttttggat |
268 |
Q |
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||||||||||| ||||| ||||||||| | || ||||||||||||||||||| ||||||||||||| |
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| T |
46033469 |
ttctctttccaccccttaactttcttccagacccgatcttgaacaaaagcaaacacttcttttttggat |
46033401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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