View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0769_low_5 (Length: 554)
Name: NF0769_low_5
Description: NF0769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0769_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 1 - 541
Target Start/End: Complemental strand, 13975397 - 13974857
Alignment:
| Q |
1 |
aattttcattcaagaagctaagtattcattccacttggttcagcctggttttcattggattcgccttcatttctatccgatcaaaaacggcgttttcgat |
100 |
Q |
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| T |
13975397 |
aattttcattcaagaagctaagtattcattccatttggttcagcctggttttcattggattcgccttcatttctatcctatcaaaaacagcgttttcgat |
13975298 |
T |
|
| Q |
101 |
cttcaaaaggccacgttttctgtcaacacaaatacttttgttcttcttcatagcttcaatgtgaataacactgacaaagcaatcctcaaagaatatctca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13975297 |
cttcaaaaggccacgttttctgtcaacacaaatacttttgttcttcttcatagcttcaatgtgaataacactgacaaagcaatcctcaaagaatatctca |
13975198 |
T |
|
| Q |
201 |
tcaatgcaacagaaccacagttgatgttgtccttcattcctttgaagaattcggctgcgtttatcaatgcaatcgaggttgttacggcgccagatagcct |
300 |
Q |
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| T |
13975197 |
tcaatgcaacagaaccacagttgatgttgtccttcattcctttgaagaattcggctgcgtttatcaatgcaatcgaggttgttacggcgccagatagcct |
13975098 |
T |
|
| Q |
301 |
aatcgttgacaccggctcgggacttttcccagtcgccccggttaacggattaacagcctatgctttccagcctgtttttaggttgaacaatggaggacct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13975097 |
aatcgttgacaccggctcgggacttttcccagtcgccccggttaacggattaacagcctatgctttccagcctgtttttaggttgaacaatggaggacct |
13974998 |
T |
|
| Q |
401 |
ctaattacatcagcaaatgatacacttggaagaatttgggaatctgatgaaccttatcttacaaataagaatcttggaaagagtgttactgttgctacta |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13974997 |
ctaattacatcagcaaatgatacacttggaagaatttgggaatctgatgaaccttatcttacaaataagaatcttggaaagagtgttactgttgctacta |
13974898 |
T |
|
| Q |
501 |
atgttgttaagtttcctcaagacaatcccgatatttcgcct |
541 |
Q |
| |
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| T |
13974897 |
atgttgttaagtttcctcaagacaatccggatatttcgcct |
13974857 |
T |
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