View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0769_low_54 (Length: 221)
Name: NF0769_low_54
Description: NF0769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0769_low_54 |
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Alignment Details
Target: chr7 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 45829715 - 45829610
Alignment:
| Q |
1 |
tgaaggtgaaaaacttacacaaatctggatttaaagatgagggaaaaaatataccaaggagaaggagaaggagaaggagaaaaaacttacacatagcagt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| | ||| |
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| T |
45829715 |
tgaaggtgaaaaacttacacaaatctggatttaaagatgagggaaaaaatataccaacga-----agaaggagaaggagaaaaaacttacacatgggagt |
45829621 |
T |
|
| Q |
101 |
gaaaaggagaa |
111 |
Q |
| |
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||||||||||| |
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| T |
45829620 |
gaaaaggagaa |
45829610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 22141351 - 22141450
Alignment:
| Q |
1 |
tgaaggtgaaaaacttacacaaatctggatttaaagatgagggaaaaaatataccaaggagaaggagaaggagaaggagaaaaaacttacacatagcagt |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| | |||||||||| | |||||||||||||||||||||||| |
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| T |
22141351 |
tgaaggtgaaaaacttaaacaaatctggatttaaagatgatggaaaaaatatacca-----acggagaaggaggatgagaaaaaacttacacatagcagt |
22141445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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