View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0769_low_6 (Length: 546)

Name: NF0769_low_6
Description: NF0769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0769_low_6
NF0769_low_6
[»] chr7 (35 HSPs)
chr7 (77-454)||(6072154-6072531)
chr7 (297-375)||(30814148-30814226)
chr7 (274-390)||(36101776-36101893)
chr7 (268-388)||(40979921-40980042)
chr7 (279-389)||(45601643-45601754)
chr7 (280-389)||(40138953-40139063)
chr7 (309-361)||(26332908-26332960)
chr7 (274-389)||(27893562-27893678)
chr7 (297-369)||(31681043-31681115)
chr7 (321-389)||(35922420-35922488)
chr7 (274-369)||(43491495-43491591)
chr7 (295-369)||(15682361-15682435)
chr7 (298-392)||(33103090-33103184)
chr7 (274-355)||(40008430-40008512)
chr7 (309-359)||(46938813-46938863)
chr7 (272-388)||(27648948-27649065)
chr7 (265-369)||(28208318-28208423)
chr7 (297-389)||(28627956-28628048)
chr7 (302-389)||(1569183-1569270)
chr7 (301-388)||(38135240-38135327)
chr7 (274-356)||(48515475-48515558)
chr7 (274-359)||(2885721-2885807)
chr7 (297-387)||(43282000-43282089)
chr7 (297-359)||(44951352-44951414)
chr7 (265-369)||(38607179-38607284)
chr7 (297-381)||(42187616-42187700)
chr7 (295-375)||(2882757-2882837)
chr7 (273-336)||(7273320-7273384)
chr7 (274-369)||(12841274-12841370)
chr7 (321-381)||(21517427-21517487)
chr7 (308-388)||(24598221-24598301)
chr7 (311-359)||(44401164-44401212)
chr7 (297-369)||(45836505-45836577)
chr7 (279-326)||(46355860-46355908)
chr7 (309-389)||(47796187-47796267)
[»] chr6 (12 HSPs)
chr6 (478-539)||(2106612-2106673)
chr6 (274-389)||(34504-34620)
chr6 (279-388)||(608329-608439)
chr6 (484-539)||(2098158-2098212)
chr6 (274-359)||(12890772-12890858)
chr6 (279-359)||(30031453-30031534)
chr6 (299-375)||(31818712-31818788)
chr6 (273-375)||(12133900-12134003)
chr6 (297-363)||(7513013-7513079)
chr6 (295-349)||(9109530-9109584)
chr6 (299-351)||(7337220-7337272)
chr6 (297-389)||(8364723-8364815)
[»] chr2 (27 HSPs)
chr2 (287-389)||(31254455-31254557)
chr2 (297-389)||(8197564-8197656)
chr2 (297-389)||(8202324-8202416)
chr2 (274-389)||(33287588-33287704)
chr2 (311-389)||(19336930-19337008)
chr2 (274-375)||(43573129-43573231)
chr2 (297-389)||(38435119-38435211)
chr2 (279-349)||(17429257-17429328)
chr2 (274-359)||(9531599-9531685)
chr2 (297-370)||(3720438-3720511)
chr2 (308-389)||(26670935-26671016)
chr2 (297-389)||(9556392-9556484)
chr2 (279-390)||(13149498-13149610)
chr2 (300-339)||(20900562-20900601)
chr2 (279-356)||(10516753-10516831)
chr2 (272-369)||(28508865-28508963)
chr2 (312-386)||(37470171-37470245)
chr2 (297-359)||(45543096-45543158)
chr2 (312-389)||(1400495-1400572)
chr2 (265-369)||(3635313-3635418)
chr2 (279-359)||(11992112-11992193)
chr2 (274-358)||(12520061-12520146)
chr2 (295-388)||(38430052-38430145)
chr2 (274-369)||(25834865-25834961)
chr2 (274-369)||(30306219-30306315)
chr2 (297-369)||(39709224-39709296)
chr2 (297-369)||(45367648-45367720)
[»] chr1 (32 HSPs)
chr1 (279-380)||(25715330-25715432)
chr1 (265-389)||(5338880-5339005)
chr1 (274-359)||(28090693-28090779)
chr1 (274-389)||(8796376-8796492)
chr1 (274-381)||(41560404-41560512)
chr1 (297-381)||(39140690-39140774)
chr1 (297-389)||(52532639-52532731)
chr1 (299-369)||(12930336-12930406)
chr1 (279-359)||(21769715-21769796)
chr1 (300-381)||(27520233-27520314)
chr1 (279-359)||(37462880-37462961)
chr1 (297-389)||(3818879-3818971)
chr1 (274-381)||(4707220-4707327)
chr1 (274-369)||(15086109-15086205)
chr1 (274-369)||(25979230-25979326)
chr1 (279-350)||(28533673-28533745)
chr1 (297-389)||(32404549-32404641)
chr1 (274-369)||(38807670-38807766)
chr1 (297-389)||(38869049-38869141)
chr1 (297-389)||(40416538-40416630)
chr1 (297-360)||(27072510-27072573)
chr1 (279-389)||(52561593-52561704)
chr1 (298-388)||(8391940-8392030)
chr1 (274-351)||(44941775-44941853)
chr1 (274-326)||(4029352-4029405)
chr1 (274-338)||(37430419-37430484)
chr1 (279-359)||(50257767-50257848)
chr1 (328-389)||(51812676-51812737)
chr1 (297-361)||(2544788-2544852)
chr1 (283-389)||(29128950-29129058)
chr1 (274-381)||(34444531-34444639)
chr1 (307-387)||(40920562-40920642)
[»] chr4 (28 HSPs)
chr4 (274-389)||(55007913-55008029)
chr4 (274-352)||(45209204-45209283)
chr4 (274-389)||(25574991-25575107)
chr4 (279-389)||(26024854-26024965)
chr4 (275-357)||(49686892-49686975)
chr4 (279-388)||(1793630-1793740)
chr4 (274-369)||(28236369-28236465)
chr4 (297-384)||(31339696-31339783)
chr4 (265-351)||(35690476-35690563)
chr4 (297-389)||(26037528-26037620)
chr4 (307-359)||(30480320-30480372)
chr4 (297-389)||(40018212-40018304)
chr4 (274-389)||(45204839-45204954)
chr4 (297-389)||(51421897-51421989)
chr4 (274-349)||(56375497-56375573)
chr4 (274-336)||(31961265-31961328)
chr4 (301-380)||(34379579-34379657)
chr4 (279-389)||(55388215-55388326)
chr4 (280-369)||(7947124-7947214)
chr4 (297-359)||(20601675-20601737)
chr4 (315-381)||(40420255-40420321)
chr4 (297-375)||(56439594-56439672)
chr4 (274-369)||(6957785-6957881)
chr4 (280-375)||(29209180-29209276)
chr4 (298-390)||(31403058-31403150)
chr4 (274-389)||(37488258-37488374)
chr4 (308-384)||(48154881-48154957)
chr4 (297-349)||(50967051-50967103)
[»] chr8 (30 HSPs)
chr8 (297-389)||(16035750-16035842)
chr8 (279-359)||(35914605-35914686)
chr8 (297-389)||(490502-490594)
chr8 (274-389)||(30198265-30198381)
chr8 (274-389)||(42584526-42584641)
chr8 (307-389)||(30783075-30783157)
chr8 (300-389)||(23023392-23023481)
chr8 (297-389)||(21425213-21425305)
chr8 (307-386)||(43904698-43904777)
chr8 (297-385)||(24399812-24399900)
chr8 (274-341)||(35323988-35324056)
chr8 (281-343)||(18741845-18741908)
chr8 (281-343)||(18746809-18746872)
chr8 (314-389)||(30559860-30559935)
chr8 (274-343)||(1928586-1928656)
chr8 (297-339)||(14742861-14742903)
chr8 (295-369)||(29735994-29736068)
chr8 (297-351)||(30689940-30689994)
chr8 (274-327)||(39953263-39953317)
chr8 (298-387)||(2518422-2518511)
chr8 (279-343)||(18473976-18474041)
chr8 (312-381)||(31715995-31716064)
chr8 (340-389)||(35643672-35643721)
chr8 (300-389)||(38391919-38392008)
chr8 (300-389)||(39967525-39967614)
chr8 (279-351)||(45419440-45419513)
chr8 (274-389)||(23492201-23492317)
chr8 (297-361)||(32931155-32931219)
chr8 (274-349)||(36545356-36545432)
chr8 (321-369)||(43013239-43013287)
[»] chr5 (26 HSPs)
chr5 (274-389)||(7678645-7678760)
chr5 (281-389)||(14667938-14668047)
chr5 (274-389)||(7359260-7359375)
chr5 (299-389)||(683726-683816)
chr5 (274-360)||(6788263-6788349)
chr5 (274-389)||(28049-28165)
chr5 (301-389)||(418061-418149)
chr5 (297-389)||(9235214-9235305)
chr5 (300-388)||(14911340-14911428)
chr5 (297-369)||(15252767-15252839)
chr5 (301-385)||(20367064-20367148)
chr5 (297-389)||(27998608-27998700)
chr5 (297-389)||(30588614-30588706)
chr5 (274-359)||(11675727-11675813)
chr5 (274-359)||(18855804-18855890)
chr5 (297-381)||(1275439-1275523)
chr5 (297-389)||(12576883-12576975)
chr5 (297-369)||(20456960-20457032)
chr5 (271-326)||(36551376-36551432)
chr5 (297-369)||(43557856-43557928)
chr5 (297-359)||(26884712-26884774)
chr5 (274-326)||(4653482-4653535)
chr5 (298-359)||(38657040-38657101)
chr5 (273-389)||(38684647-38684764)
chr5 (297-369)||(38685154-38685226)
chr5 (274-389)||(43475406-43475522)
[»] chr3 (25 HSPs)
chr3 (302-389)||(36304133-36304220)
chr3 (279-383)||(32170578-32170683)
chr3 (279-389)||(49042103-49042215)
chr3 (265-359)||(52927838-52927933)
chr3 (274-388)||(53519748-53519863)
chr3 (274-387)||(311308-311422)
chr3 (280-358)||(23534576-23534654)
chr3 (274-351)||(46148233-46148311)
chr3 (274-359)||(48508432-48508518)
chr3 (279-388)||(49841784-49841894)
chr3 (279-359)||(40991628-40991709)
chr3 (302-359)||(54365003-54365060)
chr3 (295-359)||(6780684-6780748)
chr3 (279-389)||(15296074-15296185)
chr3 (279-369)||(38060901-38060992)
chr3 (321-375)||(55384065-55384119)
chr3 (307-360)||(5852337-5852390)
chr3 (279-351)||(30797826-30797899)
chr3 (298-351)||(38850326-38850379)
chr3 (308-369)||(48953453-48953514)
chr3 (274-369)||(5169019-5169115)
chr3 (299-359)||(42510041-42510101)
chr3 (274-341)||(49503567-49503635)
chr3 (298-338)||(49888405-49888445)
chr3 (274-349)||(52139007-52139083)
[»] scaffold0024 (2 HSPs)
scaffold0024 (279-369)||(82905-82996)
scaffold0024 (298-359)||(48140-48201)
[»] scaffold0491 (1 HSPs)
scaffold0491 (281-343)||(3650-3713)
[»] scaffold0050 (1 HSPs)
scaffold0050 (297-357)||(58249-58309)


Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 77 - 454
Target Start/End: Complemental strand, 6072531 - 6072154
Alignment:
Q  77 acatcatcacaagctacaaccaaaaattcacacacaaaagtttgaacactcaaagcaactatacaaaaagaagaaaactttctccaaatatcacaaacgg 176  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6072531 acatcataacaagctacaaccaaaaattcacacacaaaattttgaacactcaaagcaactatacaaaaagaagaaaactttctccaaatatcacaaacgg 6072432  T
Q  177 cagtgtcaaaaatattccatacatttaaagaattcattaaacaattttgaagctagatttcaaaatattaaacttcccatatgacattaacaactaaaac 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6072431 cagtgtcaaaaatattccatacatttaaagaattcattaaacaattttgaagctagatttcaaaatattaaacttcccatatgacattaacaactacaac 6072332  T
Q  277 agcaacaaccaagtcttactcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaa 376  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6072331 agcaacaaccaagtcttactcactaagtgtggtcagctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaa 6072232  T
Q  377 ctctagatctttcaaactacacatccgagaaattcaaactaaaatctaaaaacaaccaacactccaaattcaaaagga 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6072231 ctctagatctttcaaactacacatccgagaaattcaaactaaaatctaaaaacaaccaacactccaaattcaaaagga 6072154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 297 - 375
Target Start/End: Original strand, 30814148 - 30814226
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaa 375  Q
    ||||||||| ||||||||||||| |||||| ||||| ||||| |||| ||||||| ||||||||||| |||||||||||    
T  30814148 cactaagtggggtcggctacatggatcaaattacgtgataatgttctatcataaaacatatttcgatccaactaattaa 30814226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 390
Target Start/End: Original strand, 36101776 - 36101893
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 372  Q
    |||| ||||||||||| |||| | ||||||||| ||||  ||||||| |||||| ||||||||||| |||| ||||||| ||||||| ||| ||||| ||    
T  36101776 aacaacaacaaccaagccttatcccactaagtggggtcaactacatggatcaaattacgtcataatgttctatcataaaccatattttgatccaactcat 36101875  T
Q  373 taaactctagatctttca 390  Q
    ||| || || ||||||||    
T  36101876 taatctataaatctttca 36101893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 268 - 388
Target Start/End: Original strand, 40979921 - 40980042
Alignment:
Q  268 aactaaaacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattca 366  Q
    |||||| ||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||| | |||| ||||||| ||||||| ||| ||    
T  40979921 aactaatacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccatagtgttctatcataaaccatatttggatcca 40980020  T
Q  367 actaattaaactctagatcttt 388  Q
    ||| ||| | ||||| ||||||    
T  40980021 actcattgacctctaaatcttt 40980042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 389
Target Start/End: Complemental strand, 45601754 - 45601643
Alignment:
Q  279 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaac 377  Q
    ||||||||||| |||| | ||||||||| | || |||||||| |||||| |||  |||| | |||| ||||||||||||||| ||| ||||| ||||| |    
T  45601754 caacaaccaagccttatcccactaagtgagttcagctacatggatcaaattacaccatagtgttctatcataaatcatattttgatccaactcattaatc 45601655  T
Q  378 tctagatctttc 389  Q
    ||||||||||||    
T  45601654 tctagatctttc 45601643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 280 - 389
Target Start/End: Original strand, 40138953 - 40139063
Alignment:
Q  280 aacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaact 378  Q
    |||| |||||||||| | ||||||||| |||| |||||||| ||||||  ||||||||||||||| |||||  ||||||||| ||  |||  ||||| ||    
T  40138953 aacagccaagtcttatcgcactaagtggggtctgctacatggatcaaatgacgtcataatattctatcatatgtcatatttctatcaaacgcattaatct 40139052  T
Q  379 ctagatctttc 389  Q
    |||||||||||    
T  40139053 ctagatctttc 40139063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 361
Target Start/End: Original strand, 26332908 - 26332960
Alignment:
Q  309 tcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcg 361  Q
    ||||||||||| |||||| |||||||||||||||| ||||||| |||||||||    
T  26332908 tcggctacatggatcaaattacgtcataatattctatcataaaccatatttcg 26332960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 389
Target Start/End: Original strand, 27893562 - 27893678
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 372  Q
    |||| ||||||||||| |||| | ||||||||  ||||||||||||| |||||| || | |||||| |||| ||||||| ||||||||| | || || ||    
T  27893562 aacaacaacaaccaagccttatcgcactaagtagggtcggctacatgaatcaaattatgccataatgttctatcataaaacatatttcggtccagctcat 27893661  T
Q  373 taaactctagatctttc 389  Q
    ||| ||||| |||||||    
T  27893662 taatctctaaatctttc 27893678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 369
Target Start/End: Original strand, 31681043 - 31681115
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 369  Q
    ||||||||| ||||||||||||| |||||| ||||||||| |||||| ||||||  ||||||| ||| |||||    
T  31681043 cactaagtggggtcggctacatggatcaaattacgtcatagtattctatcataagccatatttggatccaact 31681115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 389
Target Start/End: Complemental strand, 35922488 - 35922420
Alignment:
Q  321 atcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    |||||| || |||||||| |||| ||||||||||||||| ||||||||| ||||| ||||| |||||||    
T  35922488 atcaaattaggtcataatgttctatcataaatcatatttagattcaactcattaacctctaaatctttc 35922420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 369
Target Start/End: Complemental strand, 43491591 - 43491495
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 369  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| || ||| ||| ||||| | |||| ||||||||||||||| ||| |||||    
T  43491591 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatgaaattacatcatagtgttctatcataaatcatatttggatccaact 43491495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 369
Target Start/End: Complemental strand, 15682435 - 15682361
Alignment:
Q  295 ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 369  Q
    ||||||||||| ||| ||||||||| |||||| |||| |||| | |||| ||||||||||||||| ||| |||||    
T  15682435 ctcactaagtggggttggctacatggatcaaagtacgccatagtgttctatcataaatcatatttggatccaact 15682361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 392
Target Start/End: Complemental strand, 33103184 - 33103090
Alignment:
Q  298 actaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttcaaa 392  Q
    |||||||| ||||||||||||| |||||| ||||  ||  | |||| ||||||| |||||| |||||||||| ||||| |||||  |||||||||    
T  33103184 actaagtggggtcggctacatggatcaaattacgctatggtgttctatcataaaccatattccgattcaactcattaatctctaagtctttcaaa 33103090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 355
Target Start/End: Original strand, 40008430 - 40008512
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcat 355  Q
    |||| |||||||||||||||| |||| |||||| |||| |||||||| ||||||| ||| |||||| |||| ||||| |||||    
T  40008430 aacaacaacaaccaagtcttatctcattaagtgaggtcagctacatggatcaaacaacgacataatgttctatcatatatcat 40008512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 359
Target Start/End: Original strand, 46938813 - 46938863
Alignment:
Q  309 tcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 359  Q
    |||||||||||||||||| |||||||||||||| | ||||||| |||||||    
T  46938813 tcggctacatgtatcaaattacgtcataatattatatcataaaccatattt 46938863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 272 - 388
Target Start/End: Complemental strand, 27649065 - 27648948
Alignment:
Q  272 aaaacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaacta 370  Q
    |||||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| || | | |||| ||||||| || |||| ||| |||||     
T  27649065 aaaacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccacagtgttctatcataaaccaaatttggatccaactc 27648966  T
Q  371 attaaactctagatcttt 388  Q
    ||| | ||||| ||||||    
T  27648965 attgacctctaaatcttt 27648948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 265 - 369
Target Start/End: Original strand, 28208318 - 28208423
Alignment:
Q  265 aacaactaaaacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgat 363  Q
    |||||| | |||| ||||||||||| |||| | ||||||||| ||||||||||||| ||||||  ||| |||| | |||| ||||||| ||||||| |||    
T  28208318 aacaacaacaacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcataaaccatatttggat 28208417  T
Q  364 tcaact 369  Q
     |||||    
T  28208418 ccaact 28208423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 389
Target Start/End: Original strand, 28627956 - 28628048
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    |||||||||  |||||||||||| |||||| |||| |||||| |||| ||||||| || ||||  || ||||| ||||| ||||| |||||||    
T  28627956 cactaagtggagtcggctacatggatcaaattacgccataatgttctatcataaaccacatttgcatccaactcattaatctctaaatctttc 28628048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 389
Target Start/End: Complemental strand, 1569270 - 1569183
Alignment:
Q  302 agtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    |||| ||||| ||||||  |||||| |||| | |||| |||| ||||||| ||||||| ||| ||||| ||||| |||||||||||||    
T  1569270 agtggggtcgactacatcgatcaaattacgccgtaatgttctatcataaaccatattttgatccaactcattaatctctagatctttc 1569183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 388
Target Start/End: Original strand, 38135240 - 38135327
Alignment:
Q  301 aagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatcttt 388  Q
    ||||| |||| |||| ||| |||||| |||| ||||||||||| ||||||  ||||||||| | ||||| ||||| ||||| ||||||    
T  38135240 aagtggggtcagctagatggatcaaattacgccataatattctatcataacccatatttcggtccaactcattaatctctaaatcttt 38135327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 356
Target Start/End: Complemental strand, 48515558 - 48515475
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcata 356  Q
    |||| ||| |||||||||||| | ||||||||| ||||||||||| | |||||| ||||||||| | | || ||||||||||||    
T  48515558 aacaacaaaaaccaagtcttatcccactaagtggggtcggctacacggatcaaattacgtcatagtgtactatcataaatcata 48515475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 274 - 359
Target Start/End: Original strand, 2885721 - 2885807
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 359  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||  |||| | |||| ||||||| |||||||    
T  2885721 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacaccatagtgttctatcataaaccatattt 2885807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 297 - 387
Target Start/End: Complemental strand, 43282089 - 43282000
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctt 387  Q
    ||||||||| ||||||||| ||  |||||| |||| |||| | || ||||||||| ||||||| ||| ||||| ||||| |||||||||||    
T  43282089 cactaagtgaggtcggctagatagatcaaattacgccata-tgttttgtcataaaccatattttgatccaactcattaatctctagatctt 43282000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 44951414 - 44951352
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 359  Q
    |||||||| | |||||||||||| |||||| ||||||||| | |||| |||||||| ||||||    
T  44951414 cactaagtattgtcggctacatggatcaaattacgtcatagtgttctatcataaataatattt 44951352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 369
Target Start/End: Complemental strand, 38607284 - 38607179
Alignment:
Q  265 aacaactaaaacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgat 363  Q
    |||||| | |||| ||||||||||| |||| | |||||||||  |||||||||||| ||||||| ||| |||| | |||| ||| ||| ||||||| |||    
T  38607284 aacaacaacaacaacaacaaccaagccttaacccactaagtggagtcggctacatggatcaaacgacgccatagtgttctatcaaaaaccatatttggat 38607185  T
Q  364 tcaact 369  Q
     |||||    
T  38607184 ccaact 38607179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 381
Target Start/End: Complemental strand, 42187700 - 42187616
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcat-aatattctgtcataaatcatatttcgattcaactaattaaactcta 381  Q
    ||||||||| ||||||||||||| |||||| |||| ||| ||| |||| ||||||| || |||| ||| ||||||||||| |||||    
T  42187700 cactaagtggggtcggctacatggatcaaattacgccataaatgttctatcataaacca-atttggatccaactaattaatctcta 42187616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 295 - 375
Target Start/End: Original strand, 2882757 - 2882837
Alignment:
Q  295 ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaa 375  Q
    ||||||||||| |||| |||| ||  |||||| |||| |||||| |||| ||||||| ||| ||||||| ||||| |||||    
T  2882757 ctcactaagtgaggtcagctaaatagatcaaattacgccataatgttctatcataaaccatgtttcgatccaactcattaa 2882837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 273 - 336
Target Start/End: Complemental strand, 7273384 - 7273320
Alignment:
Q  273 aaacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcata 336  Q
    ||||| |||||| |||| |||| | ||||||||| ||||||||||||| |||||| |||||||||    
T  7273384 aaacaacaacaatcaagccttatcccactaagtggggtcggctacatggatcaaattacgtcata 7273320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 369
Target Start/End: Original strand, 12841274 - 12841370
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 369  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| ||||||  ||| |||| | |||| ||||||| || |||| ||| |||||    
T  12841274 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcataaaccaaatttggatacaact 12841370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 321 - 381
Target Start/End: Original strand, 21517427 - 21517487
Alignment:
Q  321 atcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactcta 381  Q
    |||||| ||||||||||| || | ||||||||||||||| ||| ||||| ||||| |||||    
T  21517427 atcaaattacgtcataatgttatatcataaatcatatttggatccaacttattaatctcta 21517487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 308 - 388
Target Start/End: Original strand, 24598221 - 24598301
Alignment:
Q  308 gtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatcttt 388  Q
    |||||||||||| ||||||  | | || |||||||| ||| ||||||||||| ||||||||| ||| | ||||| ||||||    
T  24598221 gtcggctacatggatcaaatgatgccaaaatattctatcaaaaatcatatttggattcaactcattgacctctaaatcttt 24598301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 311 - 359
Target Start/End: Original strand, 44401164 - 44401212
Alignment:
Q  311 ggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 359  Q
    ||||||||| |||||| ||||||||||| |||| ||||||| |||||||    
T  44401164 ggctacatggatcaaattacgtcataatgttctatcataaaacatattt 44401212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 297 - 369
Target Start/End: Original strand, 45836505 - 45836577
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 369  Q
    ||||||||| ||||||||||||| ||||||  ||| |||| | |||| ||||||| ||||||| ||| |||||    
T  45836505 cactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcataaaccatatttggatccaact 45836577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 326
Target Start/End: Original strand, 46355860 - 46355908
Alignment:
Q  279 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaa 326  Q
    ||||||||||| |||| ||||||||||| ||||||||||||| ||||||    
T  46355860 caacaaccaagccttatctcactaagtggggtcggctacatggatcaaa 46355908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 309 - 389
Target Start/End: Original strand, 47796187 - 47796267
Alignment:
Q  309 tcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    |||||| |||| |||||| |||| ||||||||||| ||||||| ||||||||  | ||||| |||||  |||| |||||||    
T  47796187 tcggctgcatggatcaaattacgccataatattctatcataaaccatatttcagtccaacttattaatttctaaatctttc 47796267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 478 - 539
Target Start/End: Complemental strand, 2106673 - 2106612
Alignment:
Q  478 aagaaagggatagttccatagttgtttttaacaaagaaatcatgtcatcgcttagaattatc 539  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2106673 aagaaagggatagttccatagttgtttttaacaaagaaatcatgtcatcgcttagaattatc 2106612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 274 - 389
Target Start/End: Original strand, 34504 - 34620
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 372  Q
    |||| |||||||||||||||| | ||||||||| |||| |||||||| |||||| |||| |||||| |||| ||||||| |||||||| || ||||| ||    
T  34504 aacaacaacaaccaagtcttatcccactaagtggggtcagctacatggatcaaattacgccataatgttctatcataaaccatatttcaatccaactcat 34603  T
Q  373 taaactctagatctttc 389  Q
    ||| || ||||||||||    
T  34604 taatctttagatctttc 34620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 279 - 388
Target Start/End: Complemental strand, 608439 - 608329
Alignment:
Q  279 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaac 377  Q
    |||||||||||||||| | ||||||||  ||||||||||||| ||||||  |||||||| |||||| ||| ||| ||||||| ||| ||||| ||| |||    
T  608439 caacaaccaagtcttatcccactaagtagggtcggctacatggatcaaatgacgtcatagtattctatcaaaaaccatatttggatccaactcattgaac 608340  T
Q  378 tctagatcttt 388  Q
    |||| ||||||    
T  608339 tctaaatcttt 608329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 484 - 539
Target Start/End: Complemental strand, 2098212 - 2098158
Alignment:
Q  484 gggatagttccatagttgtttttaacaaagaaatcatgtcatcgcttagaattatc 539  Q
    ||||||||||||| |||||||| |||||||||||| |||||||||| |||||||||    
T  2098212 gggatagttccatggttgtttt-aacaaagaaatcgtgtcatcgctcagaattatc 2098158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 359
Target Start/End: Complemental strand, 12890858 - 12890772
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 359  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||| | |||| ||||||| |||||||    
T  12890858 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccatagtgttctatcataaaccatattt 12890772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 279 - 359
Target Start/End: Complemental strand, 30031534 - 30031453
Alignment:
Q  279 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 359  Q
    ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||| | |||| ||||||| |||||||    
T  30031534 caacaaccaagccttatcccactaagtgaggtcggctacatggatcaaattacgccatagtgttctatcataaaccatattt 30031453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 375
Target Start/End: Complemental strand, 31818788 - 31818712
Alignment:
Q  299 ctaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaa 375  Q
    ||||||| ||||||||||||| |||||| |||| |||||| |||| ||||||| |||| || ||| ||||| |||||    
T  31818788 ctaagtggggtcggctacatggatcaaattacgacataatgttctatcataaaccatactttgatccaactcattaa 31818712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 375
Target Start/End: Original strand, 12133900 - 12134003
Alignment:
Q  273 aaacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaa 371  Q
    ||||| ||||||||||| |||  ||||||||||| ||||||||||||| |||| | || | |||||| |||| | || ||||| |||||||| ||||| |    
T  12133900 aaacaacaacaaccaagccttttctcactaagtggggtcggctacatggatcagattatgccataatgttctattatgaatcacatttcgatccaactca 12133999  T
Q  372 ttaa 375  Q
    ||||    
T  12134000 ttaa 12134003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 297 - 363
Target Start/End: Original strand, 7513013 - 7513079
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgat 363  Q
    ||||||||| ||||  ||||||  |||||| ||||||||||| |||| ||||||| |||||||||||    
T  7513013 cactaagtggggtcaactacatagatcaaattacgtcataatgttctatcataaaccatatttcgat 7513079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 9109530 - 9109584
Alignment:
Q  295 ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcata 349  Q
    |||||||| || ||||||||||||| |||||||||| ||||| |||||| |||||    
T  9109530 ctcactaactggggtcggctacatggatcaaactacttcatagtattctatcata 9109584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 299 - 351
Target Start/End: Original strand, 7337220 - 7337272
Alignment:
Q  299 ctaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaa 351  Q
    ||||||| ||||||||||||| | |||| |||| ||||||||||| |||||||    
T  7337220 ctaagtggggtcggctacatggaccaaattacgccataatattctatcataaa 7337272  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 297 - 389
Target Start/End: Complemental strand, 8364815 - 8364723
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    ||||||| | ||||||||||||| |||||| |||| |||||| |||| ||||||| ||| ||||  | ||||| |||||  |||| |||||||    
T  8364815 cactaagcggggtcggctacatggatcaaattacgccataatgttctatcataaaccatgtttcagtccaacttattaatttctaaatctttc 8364723  T

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Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 287 - 389
Target Start/End: Complemental strand, 31254557 - 31254455
Alignment:
Q  287 aagtcttactcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatct 386  Q
    ||||||||  ||||||||  ||||| ||||||||| ||||||  | |||||| ||||||||||||||||||||| |||||||| ||||| ||||||||||    
T  31254557 aagtcttatccactaagttgggtcgactacatgtaccaaactgtgccataatgttctgtcataaatcatatttctattcaactcattaatctctagatct 31254458  T
Q  387 ttc 389  Q
    |||    
T  31254457 ttc 31254455  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 389
Target Start/End: Original strand, 8197564 - 8197656
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    ||||||||  ||||||||||||| ||||||| ||| ||||||||||| ||||| |||||||||| || ||||| ||||| || ||||||||||    
T  8197564 cactaagtagggtcggctacatggatcaaacgacgccataatattctatcatatatcatatttctatccaactcattaatctttagatctttc 8197656  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 389
Target Start/End: Original strand, 8202324 - 8202416
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    ||||||||  ||||||||||||| ||||||| ||| ||||||||||| ||||| |||||||||| || ||||| ||||| || ||||||||||    
T  8202324 cactaagtagggtcggctacatggatcaaacgacgccataatattctatcatatatcatatttctatccaactcattaatctttagatctttc 8202416  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 274 - 389
Target Start/End: Complemental strand, 33287704 - 33287588
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 372  Q
    |||| |||||||||||||||  | |||||||||  || ||||||| | ||||||||| |||||||| |||| ||||||| |||||||||||  |||| ||    
T  33287704 aacaacaacaaccaagtcttgtcccactaagtggagttggctacaaggatcaaactatgtcataatgttctatcataaaccatatttcgatctaactcat 33287605  T
Q  373 taaactctagatctttc 389  Q
    |||  ||||||||||||    
T  33287604 taatttctagatctttc 33287588  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 311 - 389
Target Start/End: Original strand, 19336930 - 19337008
Alignment:
Q  311 ggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    ||||||||| |||||| |||| |||||| |||| ||||||| ||||||||||| ||||| ||||| ||||| |||||||    
T  19336930 ggctacatggatcaaattacgccataatgttctatcataaaccatatttcgatccaactcattaatctctaaatctttc 19337008  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 274 - 375
Target Start/End: Original strand, 43573129 - 43573231
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 372  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||||  |||  ||||||||||||||| ||| ||||| ||    
T  43573129 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccataacgttcgatcataaatcatatttggatccaactcat 43573228  T
Q  373 taa 375  Q
    |||    
T  43573229 taa 43573231  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 389
Target Start/End: Complemental strand, 38435211 - 38435119
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    ||||||||| | ||||||||||| |||||| |||| |||||| |||  ||||||| || |||||||| ||||  ||||| |||||||||||||    
T  38435211 cactaagtgggatcggctacatggatcaaattacgccataatgttcaatcataaaccaaatttcgatccaacacattaatctctagatctttc 38435119  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 279 - 349
Target Start/End: Complemental strand, 17429328 - 17429257
Alignment:
Q  279 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcata 349  Q
    ||||||||||| |||| ||||||||||| ||||||||||||| |||||| || |||||||| |||| |||||    
T  17429328 caacaaccaagccttatctcactaagtggggtcggctacatgaatcaaattatgtcataatgttctatcata 17429257  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 359
Target Start/End: Original strand, 9531599 - 9531685
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 359  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||||| |||  ||||||| |||||||    
T  9531599 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccataatgttccatcataaaccatattt 9531685  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 297 - 370
Target Start/End: Original strand, 3720438 - 3720511
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaacta 370  Q
    ||||||||| ||||||||||||| |||||| |||  |||||| |||| ||||||| ||| ||||||| ||||||    
T  3720438 cactaagtggggtcggctacatggatcaaattacaccataatgttctatcataaaccatttttcgatccaacta 3720511  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 308 - 389
Target Start/End: Complemental strand, 26671016 - 26670935
Alignment:
Q  308 gtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    |||||||||||| |||||| |||  ||| ||||||| ||||||||||||||| | | ||||| ||||| ||||| |||||||    
T  26671016 gtcggctacatggatcaaattacaccattatattctatcataaatcatattttggtccaactcattaatctctaaatctttc 26670935  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 389
Target Start/End: Original strand, 9556392 - 9556484
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    |||||||||  ||||||||||||||||||| |||  | |||| |||| ||||||| ||||| | ||| ||||| ||||| | |||||||||||    
T  9556392 cactaagtggagtcggctacatgtatcaaattacaccctaatgttctatcataaaccatatcttgatccaactcattaatcactagatctttc 9556484  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 390
Target Start/End: Complemental strand, 13149610 - 13149498
Alignment:
Q  279 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaac 377  Q
    |||||||||||||||| |||| ||| || | ||||||| ||| |||||| || |||||||| |||| |||| ||  |||||| ||||| ||| ||||| |    
T  13149610 caacaaccaagtcttatctcattaattgagatcggctatatggatcaaattatgtcataatgttctatcatcaacgatatttggattctactcattaacc 13149511  T
Q  378 tctagatctttca 390  Q
    |||| ||||||||    
T  13149510 tctaaatctttca 13149498  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 339
Target Start/End: Complemental strand, 20900601 - 20900562
Alignment:
Q  300 taagtgtggtcggctacatgtatcaaactacgtcataata 339  Q
    |||||| ||||||||||||| |||||||||||||||||||    
T  20900601 taagtgaggtcggctacatggatcaaactacgtcataata 20900562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 279 - 356
Target Start/End: Original strand, 10516753 - 10516831
Alignment:
Q  279 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcata 356  Q
    ||||||||||| |||| | ||||||||| | || |||||||| |||||| |||| ||||||||| | ||||||||||||    
T  10516753 caacaaccaagccttatcccactaagtgagatcagctacatggatcaaattacgccataatattttatcataaatcata 10516831  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 369
Target Start/End: Complemental strand, 28508963 - 28508865
Alignment:
Q  272 aaaacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 369  Q
    |||||| ||||||||||| |||| | ||||||||| ||||||||||||| ||||||  ||| |||| | |||| ||||||| || |||| ||| |||||    
T  28508963 aaaacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcataaaccaaatttggatccaact 28508865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 386
Target Start/End: Original strand, 37470171 - 37470245
Alignment:
Q  312 gctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatct 386  Q
    |||||||| ||||||||||  |||||| |||| |||||   ||||||||||| ||||| ||||| ||||||||||    
T  37470171 gctacatggatcaaactacaccataatgttctatcatatgccatatttcgatccaactcattaatctctagatct 37470245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 45543096 - 45543158
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 359  Q
    ||||||||| ||||||||||||  |||||| |||| |||||| |||| ||||||| |||||||    
T  45543096 cactaagtggggtcggctacatagatcaaagtacgccataatgttctatcataaaccatattt 45543158  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 389
Target Start/End: Original strand, 1400495 - 1400572
Alignment:
Q  312 gctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    |||||||  |||||| |||| ||||||||| | || |||||||||||| ||||||||| |||||  |||| |||||||    
T  1400495 gctacattgatcaaattacgccataatattttatcgtaaatcatatttagattcaactcattaacttctaaatctttc 1400572  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 369
Target Start/End: Original strand, 3635313 - 3635418
Alignment:
Q  265 aacaactaaaacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgat 363  Q
    |||||| | |||| ||||||||||| |||| | ||||||||| ||||||||||||| ||||||  ||| |||| | |||| ||| ||| ||||||| |||    
T  3635313 aacaacaacaacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcaaaaaccatatttggat 3635412  T
Q  364 tcaact 369  Q
     |||||    
T  3635413 ccaact 3635418  T

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Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 359
Target Start/End: Original strand, 11992112 - 11992193
Alignment:
Q  279 caacaaccaagtcttactc-actaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 359  Q
    ||||||||||| |||| || |||||||| |||| |||||||| ||||||  ||| |||||| |||| ||| |||||||||||    
T  11992112 caacaaccaagccttattccactaagtggggtcagctacatggatcaaataacgccataatgttctatcaaaaatcatattt 11992193  T

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Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 358
Target Start/End: Original strand, 12520061 - 12520146
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatt 358  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||| | || | ||||||| ||||||    
T  12520061 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccatagtgttttatcataaaccatatt 12520146  T

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Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 388
Target Start/End: Complemental strand, 38430145 - 38430052
Alignment:
Q  295 ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatcttt 388  Q
    ||||||||||| ||||||||||||| ||||||  ||| |||| | |||| ||| ||| ||||||| ||| ||||| ||| | ||||| ||||||    
T  38430145 ctcactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcaaaaaccatatttggatccaactcattgacctctaaatcttt 38430052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 369
Target Start/End: Complemental strand, 25834961 - 25834865
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 369  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| ||||||  ||| || | | |||| ||||||| ||||||| ||| |||||    
T  25834961 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccacagtgttctatcataaaccatatttggatccaact 25834865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 369
Target Start/End: Complemental strand, 30306315 - 30306219
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 369  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| ||||||  ||| |||| | |||| ||||||| || |||| ||| |||||    
T  30306315 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcataaaccaaatttggatccaact 30306219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 297 - 369
Target Start/End: Original strand, 39709224 - 39709296
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 369  Q
    ||||||||| ||||||||||||| |||||| |||| |||| | |||  ||||||| ||||||| ||| |||||    
T  39709224 cactaagtggggtcggctacatggatcaaattacgccatagtgttcaatcataaaccatattttgatccaact 39709296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 297 - 369
Target Start/End: Original strand, 45367648 - 45367720
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 369  Q
    ||||||||| ||||||| ||||| ||||||  |||||||| | |||| ||| ||||||||||| ||| |||||    
T  45367648 cactaagtggggtcggcgacatggatcaaatgacgtcatagtgttctatcaaaaatcatatttggatccaact 45367720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 279 - 380
Target Start/End: Original strand, 25715330 - 25715432
Alignment:
Q  279 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaac 377  Q
    ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| ||||||||||| ||||||| ||||||||| ||||||| ||||| |    
T  25715330 caacaaccaagccttatcccactaagtgaggtcggctacatggatcaaattacgccataatattctatcataaaccatatttcggttcaactcattaatc 25715429  T
Q  378 tct 380  Q
    |||    
T  25715430 tct 25715432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 265 - 389
Target Start/End: Complemental strand, 5339005 - 5338880
Alignment:
Q  265 aacaactaaaacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgat 363  Q
    |||||| | |||| |||||||| || |||| ||||||||||| ||| ||||||||| |||||| |||| |||||| |||| | |||||||| ||||||||    
T  5339005 aacaacaacaacaacaacaaccgagccttatctcactaagtgaggttggctacatggatcaaattacgccataatgttctataataaatcacatttcgat 5338906  T
Q  364 tcaactaattaaactctagatctttc 389  Q
     ||||| ||||| |||||||||||||    
T  5338905 ccaactcattaatctctagatctttc 5338880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 274 - 359
Target Start/End: Original strand, 28090693 - 28090779
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 359  Q
    |||| |||||||||||||||| | ||||||||| ||||||||||||| |||||| |||| |||||| |||| ||||||| |||||||    
T  28090693 aacaacaacaaccaagtcttatcccactaagtggggtcggctacatggatcaaattacgccataatgttctatcataaaccatattt 28090779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 274 - 389
Target Start/End: Complemental strand, 8796492 - 8796376
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 372  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| || ||| |||| |||||| |||| ||||||| |||||||| || ||| | ||    
T  8796492 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggattaaattacgccataatgttctatcataaaccatatttcaatccaagtcat 8796393  T
Q  373 taaactctagatctttc 389  Q
    |||  ||||||||||||    
T  8796392 taatatctagatctttc 8796376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 274 - 381
Target Start/End: Complemental strand, 41560512 - 41560404
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 372  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||||| |||| ||||||  ||||||| ||| ||||| ||    
T  41560512 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccataatgttctatcataacccatatttggatccaactcat 41560413  T
Q  373 taaactcta 381  Q
    ||| |||||    
T  41560412 taatctcta 41560404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 381
Target Start/End: Complemental strand, 39140774 - 39140690
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactcta 381  Q
    ||||||||| ||||||||||||| |||||| |||| |||||| |||| ||  ||| ||||||| ||| ||||||||||| |||||    
T  39140774 cactaagtggggtcggctacatgaatcaaattacgccataatgttctatctgaaaccatatttggatccaactaattaacctcta 39140690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 389
Target Start/End: Original strand, 52532639 - 52532731
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    ||||||||| ||||||||||||| |||||| |||| |||||| |||| ||||||| ||||||| | | ||||| |||||  |||| |||||||    
T  52532639 cactaagtggggtcggctacatgaatcaaattacgccataatgttctatcataaaccatattttgttccaactcattaatttctaaatctttc 52532731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 369
Target Start/End: Original strand, 12930336 - 12930406
Alignment:
Q  299 ctaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 369  Q
    ||||||| ||| ||||||| | |||||| ||||||||||| |||| ||||||||||||||| ||| |||||    
T  12930336 ctaagtggggttggctacacggatcaaattacgtcataatcttctatcataaatcatatttggatccaact 12930406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 279 - 359
Target Start/End: Original strand, 21769715 - 21769796
Alignment:
Q  279 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 359  Q
    ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||||| |||| ||| ||| |||||||    
T  21769715 caacaaccaagccttatcacactaagtggggtcggctacatggatcaaattacgccataatgttctatcacaaaccatattt 21769796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 300 - 381
Target Start/End: Original strand, 27520233 - 27520314
Alignment:
Q  300 taagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactcta 381  Q
    |||||| ||||| ||||||| |||||| ||| ||||||| |||| ||||||||||||||| ||| || || ||||| |||||    
T  27520233 taagtgaggtcgactacatgaatcaaattacatcataatgttctatcataaatcatatttggatccagctcattaatctcta 27520314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 279 - 359
Target Start/End: Original strand, 37462880 - 37462961
Alignment:
Q  279 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 359  Q
    ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||||| |||| | ||||| |||||||    
T  37462880 caacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccataatgttctatgataaaccatattt 37462961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 389
Target Start/End: Original strand, 3818879 - 3818971
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    |||||||||  |||||||||||| ||||||   || |||||| |||  ||||||| |||||||| |||||||| ||||| ||||| |||||||    
T  3818879 cactaagtgcagtcggctacatggatcaaatggcgacataatgttccatcataaaccatatttctattcaactcattaatctctaaatctttc 3818971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 381
Target Start/End: Original strand, 4707220 - 4707327
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 372  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||| | |||| ||||||| || |||| ||| ||||| ||    
T  4707220 aacaacaacaaccaagccttatcccactaagtggggtcggctacatg-atcaaattacgccatagtgttctatcataaaccaaatttggatccaactcat 4707318  T
Q  373 taaactcta 381  Q
    ||| |||||    
T  4707319 taacctcta 4707327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 369
Target Start/End: Complemental strand, 15086205 - 15086109
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 369  Q
    |||| ||||||||||| |||| | ||||||||| ||| ||||||||| ||||||  |||||||| | |||| ||| ||||||||||| ||| |||||    
T  15086205 aacaacaacaaccaagccttatcccactaagtggggttggctacatggatcaaatgacgtcatagtgttctatcaaaaatcatatttggatccaact 15086109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 369
Target Start/End: Original strand, 25979230 - 25979326
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 369  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| ||||||  ||| |||| | |||| ||||||| ||||||| ||| |||||    
T  25979230 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcataaaccatatttggatccaact 25979326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 350
Target Start/End: Complemental strand, 28533745 - 28533673
Alignment:
Q  279 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataa 350  Q
    |||||||||||||||| | ||||||||| ||||||||||||| ||||||  |||||||| | |||| ||||||    
T  28533745 caacaaccaagtcttatcccactaagtggggtcggctacatggatcaaatgacgtcatagtgttctatcataa 28533673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 389
Target Start/End: Original strand, 32404549 - 32404641
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    ||||||||| ||||||||||||| |||||| |||| ||| || || | ||||||| ||| ||| |||| |||| ||||| ||||| |||||||    
T  32404549 cactaagtggggtcggctacatggatcaaattacgccattatgttatatcataaaccatgtttggatttaactcattaatctctaaatctttc 32404641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 369
Target Start/End: Original strand, 38807670 - 38807766
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 369  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| | |||| |||| |||| | |||| ||||||| ||||||| ||| |||||    
T  38807670 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggaacaaattacgccatagtgttctatcataaaccatatttggatccaact 38807766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 389
Target Start/End: Complemental strand, 38869141 - 38869049
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    ||||||||| ||||||||||||| ||||||| ||| |||||| |||| ||||| | ||||| || || ||||  ||||| | |||||||||||    
T  38869141 cactaagtggggtcggctacatggatcaaacgacgccataatgttctatcatataccatatatctatccaacccattaatcgctagatctttc 38869049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 389
Target Start/End: Complemental strand, 40416630 - 40416538
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    ||||||||| ||||||||| | | |||| | |||  |||||| |||| ||||||| ||||||||||| ||||| ||||| || ||||||||||    
T  40416630 cactaagtggggtcggctaaagggatcacattacaccataatgttctatcataaaccatatttcgatccaactcattaatctatagatctttc 40416538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 360
Target Start/End: Original strand, 27072510 - 27072573
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttc 360  Q
    |||||||  |||||||||||||| |||||| |||| |||||| |||| ||||||| ||||||||    
T  27072510 cactaagcatggtcggctacatggatcaaattacgccataatgttctatcataaaccatatttc 27072573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 389
Target Start/End: Original strand, 52561593 - 52561704
Alignment:
Q  279 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaac 377  Q
    ||||||||||| |||| | ||||||||| ||||||||||||| |||||| | || |||||| ||||  |  ||| ||||||| ||| ||||| ||||| |    
T  52561593 caacaaccaagccttatcccactaagtggggtcggctacatggatcaaatttcgccataatgttctacccgaaaccatatttggatccaactcattaacc 52561692  T
Q  378 tctagatctttc 389  Q
    |||| |||||||    
T  52561693 tctaaatctttc 52561704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 298 - 388
Target Start/End: Complemental strand, 8392030 - 8391940
Alignment:
Q  298 actaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatcttt 388  Q
    |||||||| ||| ||||||||| ||||||  ||| |||| |||||| ||| ||||||||||| ||| ||||| ||| | ||||| ||||||    
T  8392030 actaagtggggttggctacatggatcaaatgacgccatagtattctatcaaaaatcatatttggatccaacttattgacctctaaatcttt 8391940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 274 - 351
Target Start/End: Original strand, 44941775 - 44941853
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaa 351  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||| | |||| |||||||    
T  44941775 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccatagtgttctatcataaa 44941853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 326
Target Start/End: Complemental strand, 4029405 - 4029352
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaa 326  Q
    |||| |||||||||||||||| | ||||||||| ||||||||||||| ||||||    
T  4029405 aacaacaacaaccaagtcttatcccactaagtggggtcggctacatggatcaaa 4029352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 338
Target Start/End: Original strand, 37430419 - 37430484
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataat 338  Q
    |||| ||||||||||| |||| ||||||||||| | ||||||| ||| ||||||||||| ||||||    
T  37430419 aacaacaacaaccaagccttatctcactaagtgggatcggctatatggatcaaactacgccataat 37430484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 359
Target Start/End: Complemental strand, 50257848 - 50257767
Alignment:
Q  279 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 359  Q
    ||||||| ||| |||| ||||||||||| ||| ||||||||| |||||| |||  |||||| |||| ||||||| |||||||    
T  50257848 caacaacgaagccttatctcactaagtggggttggctacatggatcaaattacaccataatgttctatcataaaccatattt 50257767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 389
Target Start/End: Complemental strand, 51812737 - 51812676
Alignment:
Q  328 tacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    |||| ||||||||||| ||||||| |||||||||||  |||| |||||  ||||||||||||    
T  51812737 tacggcataatattctatcataaaccatatttcgatctaactcattaacatctagatctttc 51812676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 297 - 361
Target Start/End: Complemental strand, 2544852 - 2544788
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcg 361  Q
    ||||||||| ||||||||||||| |||||| || | |||||| |||| | ||||| |||||||||    
T  2544852 cactaagtggggtcggctacatggatcaaattatgccataatgttctattataaaccatatttcg 2544788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 283 - 389
Target Start/End: Complemental strand, 29129058 - 29128950
Alignment:
Q  283 aaccaagtctta-ctcactaagtgtggtcggctacat-gtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactct 380  Q
    ||||||| |||| ||||||||||| |||||||||||| | |||| | |||  |||||| |||| ||||||| ||||||| ||| |||||  |||| ||||    
T  29129058 aaccaagccttatctcactaagtggggtcggctacatgggatcatattacaccataatgttctatcataaaccatatttggatccaacttgttaacctct 29128959  T
Q  381 agatctttc 389  Q
    | |||||||    
T  29128958 aaatctttc 29128950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 381
Target Start/End: Complemental strand, 34444639 - 34444531
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 372  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||  |||||| |||  |||||| || | | ||||| ||||||| ||| ||||| ||    
T  34444639 aacaacaacaaccaagccttatcccactaagtggggtcggctacatagatcaaattacaccataatgttttattataaaccatatttggatccaactcat 34444540  T
Q  373 taaactcta 381  Q
    ||| |||||    
T  34444539 taatctcta 34444531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 307 - 387
Target Start/End: Original strand, 40920562 - 40920642
Alignment:
Q  307 ggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctt 387  Q
    ||||| ||||||| ||||||  ||  ||||||||||| ||||| | |||||||| || ||||| ||||| |||||||||||    
T  40920562 ggtcgactacatgaatcaaaagacaccataatattctatcatataccatatttctatccaactcattaatctctagatctt 40920642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 274 - 389
Target Start/End: Complemental strand, 55008029 - 55007913
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 372  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||||||||||  ||| ||||||| ||||||||| | ||||| ||    
T  55008029 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgtcataatgatctatcataaaccatatttcggtccaactcat 55007930  T
Q  373 taaactctagatctttc 389  Q
    ||| ||||| |||||||    
T  55007929 taatctctaaatctttc 55007913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 274 - 352
Target Start/End: Original strand, 45209204 - 45209283
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaat 352  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| ||||||||||| ||||||||||| ||||||||    
T  45209204 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaactacgccataatattctatcataaat 45209283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 274 - 389
Target Start/End: Complemental strand, 25575107 - 25574991
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 372  Q
    |||| ||||||||||| |||| | |||||| || |||| |||||||| |||||| |||  || ||| |||| ||||||| ||||||||||| ||||| ||    
T  25575107 aacaacaacaaccaagccttatcccactaaatggggtctgctacatggatcaaattacaccacaatgttctatcataaaccatatttcgatccaactcat 25575008  T
Q  373 taaactctagatctttc 389  Q
    ||| |||||||||||||    
T  25575007 taatctctagatctttc 25574991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 389
Target Start/End: Original strand, 26024854 - 26024965
Alignment:
Q  279 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaac 377  Q
    ||||||||||| |||| | ||||||||| ||||||||||||| || ||| |||  |||||| |||| ||||||| ||| | ||||| ||||| ||||| |    
T  26024854 caacaaccaagccttatcccactaagtgaggtcggctacatggataaaattacaccataatgttctatcataaaccatgtctcgatccaactcattaatc 26024953  T
Q  378 tctagatctttc 389  Q
    ||||||||||||    
T  26024954 tctagatctttc 26024965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 357
Target Start/End: Complemental strand, 49686975 - 49686892
Alignment:
Q  275 acagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatat 357  Q
    |||||||||||||||||||| | ||||||||| |||||||||||||  |||||| ||| ||||||||||  ||||| |||||||    
T  49686975 acagcaacaaccaagtcttatcccactaagtggggtcggctacatggttcaaacgacgccataatattccatcatatatcatat 49686892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 279 - 388
Target Start/End: Complemental strand, 1793740 - 1793630
Alignment:
Q  279 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaac 377  Q
    ||||||| ||| |||| ||||||||||| | ||||||||||| |||||| ||||||||| |  ||| ||||||||||||||| ||| ||||| ||| | |    
T  1793740 caacaactaagccttatctcactaagtgagatcggctacatgaatcaaattacgtcatagtgctctatcataaatcatatttggatccaactcattgacc 1793641  T
Q  378 tctagatcttt 388  Q
    |||| ||||||    
T  1793640 tctaaatcttt 1793630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 369
Target Start/End: Complemental strand, 28236465 - 28236369
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 369  Q
    |||| |||||||||||||||| | ||||||||| ||||||||||||  |||||| |||  ||||||||||| ||||||| || |||| ||| |||||    
T  28236465 aacaacaacaaccaagtcttatcccactaagtggggtcggctacatagatcaaattacaccataatattctatcataaaccaaatttggatccaact 28236369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 297 - 384
Target Start/End: Complemental strand, 31339783 - 31339696
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagat 384  Q
    ||||||||| |||||| |||||| | ||||| |||||||||| |||| ||||  | ||||||||||| ||||| ||||| ||||||||    
T  31339783 cactaagtggggtcggatacatggaccaaacgacgtcataatgttctatcatgtaccatatttcgatccaactcattaatctctagat 31339696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 265 - 351
Target Start/End: Complemental strand, 35690563 - 35690476
Alignment:
Q  265 aacaactaaaacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaa 351  Q
    |||||| | |||| ||| |||||||||||| | ||||||||| ||||||||||||| |||||| |||| |||||| |||| |||||||    
T  35690563 aacaacaacaacaacaaaaaccaagtcttatcccactaagtggggtcggctacatggatcaaattacgccataatgttctatcataaa 35690476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 389
Target Start/End: Original strand, 26037528 - 26037620
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    ||||||||| ||||||||||||| ||| || |||| |||| | |||| ||||||| ||||||| ||| ||||| ||| | ||||| |||||||    
T  26037528 cactaagtggggtcggctacatggatccaattacgccatagtgttctatcataaaccatatttggatccaactcattcacctctaaatctttc 26037620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 359
Target Start/End: Complemental strand, 30480372 - 30480320
Alignment:
Q  307 ggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 359  Q
    ||||||||||||| |||||| |||||||||| ||||| ||||||| |||||||    
T  30480372 ggtcggctacatggatcaaattacgtcataaaattctatcataaaccatattt 30480320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 389
Target Start/End: Original strand, 40018212 - 40018304
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    ||||||||| ||||||||||||| ||||||| ||| | |||| |||| ||||| |||||||  | || ||||| ||| | |||||||||||||    
T  40018212 cactaagtggggtcggctacatggatcaaacgacgccgtaatgttctatcatatatcatatccctatccaactcattgatctctagatctttc 40018304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 389
Target Start/End: Original strand, 45204839 - 45204954
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 372  Q
    |||| ||||||||||| |||| | ||||||||  ||| ||||||||  |||||| |||| | |||| |||| ||||||| ||||||| ||| ||||| ||    
T  45204839 aacaacaacaaccaagccttatcccactaagttgggtgggctacatagatcaaattacgcc-taatgttctatcataaaccatatttggatccaacttat 45204937  T
Q  373 taaactctagatctttc 389  Q
    ||||||||| |||||||    
T  45204938 taaactctaaatctttc 45204954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 389
Target Start/End: Complemental strand, 51421989 - 51421897
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    ||||||||| | | ||||||||| |||||| ||||||||||| |||| ||||||| ||| ||| ||| ||| | ||||| ||||| |||||||    
T  51421989 cactaagtgagattggctacatggatcaaattacgtcataatgttctatcataaaccatttttggatccaattcattaacctctaaatctttc 51421897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 349
Target Start/End: Complemental strand, 56375573 - 56375497
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcata 349  Q
    |||| |||||||||||||||| | ||||||||| ||||||||||||| ||||||  |||||||| | |||| |||||    
T  56375573 aacaacaacaaccaagtcttatcccactaagtgaggtcggctacatggatcaaatgacgtcatagtgttctatcata 56375497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 336
Target Start/End: Original strand, 31961265 - 31961328
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcata 336  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| ||||||| ||||||||    
T  31961265 aacaacaacaaccaagccttatcccactaagtgaggtcggctacatgaatcaaacgacgtcata 31961328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 380
Target Start/End: Complemental strand, 34379657 - 34379579
Alignment:
Q  301 aagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactct 380  Q
    ||||| ||||||||||||| |||||  |||| ||||||||||| ||||||| ||||||||| | ||||| ||||| ||||    
T  34379657 aagtggggtcggctacatg-atcaagttacgccataatattctatcataaaccatatttcggtccaactcattaatctct 34379579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 389
Target Start/End: Original strand, 55388215 - 55388326
Alignment:
Q  279 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaac 377  Q
    ||||||||||| |||| | ||||||||| ||||| | ||||| |||||| |||  || ||| |||| |||||||||||||||||||  |||| ||||| |    
T  55388215 caacaaccaagccttatcccactaagtggggtcgacaacatggatcaaattacaccacaatgttctatcataaatcatatttcgatctaactcattaatc 55388314  T
Q  378 tctagatctttc 389  Q
    || | |||||||    
T  55388315 tccaaatctttc 55388326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 369
Target Start/End: Complemental strand, 7947214 - 7947124
Alignment:
Q  280 aacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 369  Q
    |||||||||| |||| | ||||||||| ||||||||||||| |||||| ||| | ||| | |||| |||||||||| |||| ||| |||||    
T  7947214 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacatgatagtgttctatcataaatcaaatttggatccaact 7947124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 20601675 - 20601737
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 359  Q
    ||||||||| | || | |||||| |||||| ||||||||||| |||| |||||||||||||||    
T  20601675 cactaagtgggttcagttacatgaatcaaattacgtcataatgttctatcataaatcatattt 20601737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 381
Target Start/End: Original strand, 40420255 - 40420321
Alignment:
Q  315 acatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactcta 381  Q
    |||||||||||| |||||| |||| |||| ||||||| ||||||  ||||||||| ||||| |||||    
T  40420255 acatgtatcaaattacgtcgtaatgttctatcataaaccatattaggattcaactcattaatctcta 40420321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 297 - 375
Target Start/End: Original strand, 56439594 - 56439672
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaa 375  Q
    ||||||||| ||| ||||| ||| || ||| ||||  ||||| |||| ||||||| ||||||||||| |||||||||||    
T  56439594 cactaagtggggttggctatatggattaaattacgctataatgttctatcataaaccatatttcgatccaactaattaa 56439672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 369
Target Start/End: Complemental strand, 6957881 - 6957785
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 369  Q
    |||| ||||||||||| |||| | ||||||||| | ||||||||||| ||||||  |||||||| | |||| ||||| |||| |||| ||| |||||    
T  6957881 aacaacaacaaccaagccttatcccactaagtgggatcggctacatggatcaaatgacgtcatagtgttctatcatacatcaaatttggatccaact 6957785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 375
Target Start/End: Original strand, 29209180 - 29209276
Alignment:
Q  280 aacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaa 375  Q
    ||||||||||||||| | || |||||| ||||||||||||  ||||||| ||| ||||||  ||| ||||| | |||||||| || ||||| |||||    
T  29209180 aacaaccaagtcttatcccattaagtggggtcggctacattgatcaaacaacgccataatgctctatcatataccatatttctatccaactcattaa 29209276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 298 - 390
Target Start/End: Original strand, 31403058 - 31403150
Alignment:
Q  298 actaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttca 390  Q
    |||||||| ||||| ||||||| ||||| | ||  ||||||  ||| ||||| | || ||||| || ||||||||||| ||||||||||||||    
T  31403058 actaagtggggtcgtctacatggatcaagcaacaccataatgctctatcatataccacatttctatccaactaattaatctctagatctttca 31403150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 389
Target Start/End: Complemental strand, 37488374 - 37488258
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 372  Q
    |||| ||||||||||| |||| | ||||||||| ||  ||||||||| |||||| |||| ||||||  ||| |||| || ||||||| |||  |||| ||    
T  37488374 aacaacaacaaccaagccttatcccactaagtggggctggctacatggatcaaattacgccataatgctctatcattaaccatattttgatcaaacttat 37488275  T
Q  373 taaactctagatctttc 389  Q
    |||  ||||||||||||    
T  37488274 taatttctagatctttc 37488258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 308 - 384
Target Start/End: Original strand, 48154881 - 48154957
Alignment:
Q  308 gtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagat 384  Q
    |||||||||||  ||||||| | | |||||| |||||||||| ||||| |||| || ||||| ||||| ||||||||    
T  48154881 gtcggctacatacatcaaacaatgccataatgttctgtcatatatcatgtttctatccaactcattaatctctagat 48154957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 297 - 349
Target Start/End: Original strand, 50967051 - 50967103
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcata 349  Q
    ||||||||| ||||||||||||| |||||| |||| |||||| |||| |||||    
T  50967051 cactaagtgaggtcggctacatggatcaaattacgacataattttctttcata 50967103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 389
Target Start/End: Original strand, 16035750 - 16035842
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    ||||||||| |||| |||||||| |||||| ||||||||||| ||||  |||||| ||||||||||| ||||||| ||| |||||||| ||||    
T  16035750 cactaagtggggtcagctacatgaatcaaattacgtcataatgttctaccataaaccatatttcgatccaactaagtaatctctagatatttc 16035842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 279 - 359
Target Start/End: Original strand, 35914605 - 35914686
Alignment:
Q  279 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 359  Q
    |||||||||||||||| ||||||||||| |||| |||||||| |||||| |||| |||||| |||| ||||||| |||||||    
T  35914605 caacaaccaagtcttatctcactaagtggggtcagctacatggatcaaattacgccataatgttctatcataaaccatattt 35914686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 297 - 389
Target Start/End: Complemental strand, 490594 - 490502
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    ||||||||| ||||||||||||| |||||| |||| |||||| |||| ||||||| ||||||| ||| ||||| || || ||||| |||||||    
T  490594 cactaagtggggtcggctacatggatcaaattacgccataatgttctatcataaaccatatttggatccaactcatcaatctctaaatctttc 490502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 274 - 389
Target Start/End: Original strand, 30198265 - 30198381
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 372  Q
    |||| ||||||||||| |||| | ||||||||| ||||||| ||||  ||||||||||  ||||||||||| ||||||| |||||| |||| ||||| ||    
T  30198265 aacaacaacaaccaagccttatcccactaagtggggtcggcaacatagatcaaactacaccataatattctatcataaaccatattccgatccaactcat 30198364  T
Q  373 taaactctagatctttc 389  Q
    ||| ||| | |||||||    
T  30198365 taatctcaatatctttc 30198381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 274 - 389
Target Start/End: Complemental strand, 42584641 - 42584526
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 372  Q
    |||| |||||| ||||||||| | ||||||||| ||||||||||| | |||||| ||||||||||| |||| ||||||| ||||||| ||| ||| | ||    
T  42584641 aacaacaacaatcaagtcttatcccactaagtggggtcggctacaag-atcaaattacgtcataatgttctatcataaaccatatttggatccaaatcat 42584543  T
Q  373 taaactctagatctttc 389  Q
    ||| || ||||||||||    
T  42584542 taacctatagatctttc 42584526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 307 - 389
Target Start/End: Original strand, 30783075 - 30783157
Alignment:
Q  307 ggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    ||||||||||||| |||||||||| ||||||| || | | ||||| | ||||||||| ||||| ||||| |||||||||||||    
T  30783075 ggtcggctacatggatcaaactacctcataatgttttattataaaccgtatttcgatccaactcattaatctctagatctttc 30783157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 300 - 389
Target Start/End: Complemental strand, 23023481 - 23023392
Alignment:
Q  300 taagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    |||||| |||||| |||||| ||||||| ||||||||||||||| ||||| ||||| || | || ||||| ||||| || ||||||||||    
T  23023481 taagtggggtcggttacatggatcaaacgacgtcataatattctatcatatatcatgttcctatccaactcattaatctgtagatctttc 23023392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 389
Target Start/End: Complemental strand, 21425305 - 21425213
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    ||||||||  |||| |||||||| |||||| || | ||||||  ||| ||||||||||||||||||| ||||| ||||| ||||| |||||||    
T  21425305 cactaagtagggtctgctacatggatcaaattatgccataatggtctatcataaatcatatttcgatccaactcattaatctctatatctttc 21425213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 307 - 386
Target Start/End: Original strand, 43904698 - 43904777
Alignment:
Q  307 ggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatct 386  Q
    ||||||||||||| |||||| |||| |||||| |||| ||||||| ||||||| ||| ||||| ||||| ||||| ||||    
T  43904698 ggtcggctacatggatcaaattacgccataatgttctatcataaaccatatttagatccaactcattaatctctaaatct 43904777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 385
Target Start/End: Original strand, 24399812 - 24399900
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatc 385  Q
    ||||||||||||| ||||||||  | ||||  || |||||||||||| ||||||| |||||||| || ||||| ||||| ||| |||||    
T  24399812 cactaagtgtggttggctacatagaacaaatgacatcataatattctatcataaaccatatttcaatccaactcattaatctcgagatc 24399900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 341
Target Start/End: Complemental strand, 35324056 - 35323988
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatatt 341  Q
    |||| ||||||||||| |||| | ||||||||| |||||||||| || |||||| ||||||||||||||    
T  35324056 aacaacaacaaccaagccttatcccactaagtggggtcggctacgtggatcaaattacgtcataatatt 35323988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 343
Target Start/End: Complemental strand, 18741908 - 18741845
Alignment:
Q  281 acaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattct 343  Q
    |||||||||||||| | ||||||||| |||||||||| || |||||| ||||||||||| ||||    
T  18741908 acaaccaagtcttatcccactaagtggggtcggctacttggatcaaattacgtcataatgttct 18741845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 343
Target Start/End: Complemental strand, 18746872 - 18746809
Alignment:
Q  281 acaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattct 343  Q
    |||||||||||||| | ||||||||| |||||||||| || |||||| ||||||||||| ||||    
T  18746872 acaaccaagtcttatcccactaagtggggtcggctacttggatcaaattacgtcataatgttct 18746809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 389
Target Start/End: Complemental strand, 30559935 - 30559860
Alignment:
Q  314 tacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    |||||| |||||| ||||||||||| |||| ||||||| ||||| | ||| ||||| ||||| ||||| |||||||    
T  30559935 tacatggatcaaattacgtcataatgttctatcataaaccatatatggatccaactcattaatctctaaatctttc 30559860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 1928586 - 1928656
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattct 343  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||||| ||||    
T  1928586 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccataatgttct 1928656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 14742861 - 14742903
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataata 339  Q
    ||||||||| ||| ||||||||| |||||||||||||||||||    
T  14742861 cactaagtggggttggctacatggatcaaactacgtcataata 14742903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 369
Target Start/End: Complemental strand, 29736068 - 29735994
Alignment:
Q  295 ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 369  Q
    |||||||||| ||  || ||||||| |||||| ||||||||||  |||  ||||||||||||||| |||||||||    
T  29736068 ctcactaagtatgaccgactacatgaatcaaattacgtcataaagttcaatcataaatcatatttggattcaact 29735994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 297 - 351
Target Start/End: Complemental strand, 30689994 - 30689940
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaa 351  Q
    ||||||||| ||||||||||||| |||||| ||||||||||| || | |||||||    
T  30689994 cactaagtggggtcggctacatggatcaaattacgtcataatgttatatcataaa 30689940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 274 - 327
Target Start/End: Original strand, 39953263 - 39953317
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaac 327  Q
    |||| |||||||||||||||| | ||||||||| ||||||||||||| |||||||    
T  39953263 aacaacaacaaccaagtcttatcccactaagtggggtcggctacatgaatcaaac 39953317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 387
Target Start/End: Original strand, 2518422 - 2518511
Alignment:
Q  298 actaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctt 387  Q
    |||||||| |||| |||||| | |||||| || | |||||| |||| ||| |||||||||||||||  |||| ||||| || ||||||||    
T  2518422 actaagtggggtcagctacaaggatcaaattatgccataatgttctatcagaaatcatatttcgatcaaactgattaatctgtagatctt 2518511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 343
Target Start/End: Original strand, 18473976 - 18474041
Alignment:
Q  279 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattct 343  Q
    |||||||||||||||| | |||||||||  |||||||||||| ||||||| | |||||||| ||||    
T  18473976 caacaaccaagtcttatcccactaagtggtgtcggctacatgaatcaaacgaagtcataatgttct 18474041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 381
Target Start/End: Complemental strand, 31716064 - 31715995
Alignment:
Q  312 gctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactcta 381  Q
    |||||||| |||||| |||| |||||| |||| || |||| ||||||| ||| ||||||||||| |||||    
T  31716064 gctacatggatcaaattacgccataatgttctatcttaaaccatatttggatccaactaattaatctcta 31715995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 389
Target Start/End: Original strand, 35643672 - 35643721
Alignment:
Q  340 ttctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    |||| ||||||| ||||||||||| ||||| ||||| |||||||||||||    
T  35643672 ttctatcataaaccatatttcgatccaactcattaatctctagatctttc 35643721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 389
Target Start/End: Original strand, 38391919 - 38392008
Alignment:
Q  300 taagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    |||||| | ||||| ||||| || ||| |||| ||||||||||| ||||| | ||||||||||| | ||| ||||| || ||||||||||    
T  38391919 taagtgggatcggccacatggatgaaattacgccataatattctatcatataccatatttcgatcccactcattaatctgtagatctttc 38392008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 389
Target Start/End: Original strand, 39967525 - 39967614
Alignment:
Q  300 taagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    |||||| | ||||||||||| ||||||||||| |||||| ||||  ||||||  |||| || || ||||| ||||| | |||||||||||    
T  39967525 taagtgggatcggctacatggatcaaactacgccataatgttctaacataaactatatctcaatccaactcattaatcgctagatctttc 39967614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 351
Target Start/End: Complemental strand, 45419513 - 45419440
Alignment:
Q  279 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaa 351  Q
    ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||  |||||| |||| |||||||    
T  45419513 caacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacaccataatgttctatcataaa 45419440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 389
Target Start/End: Complemental strand, 23492317 - 23492201
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 372  Q
    |||| |||||| |||| |||| ||||||||||| ||||||||||||| || |||  ||  |||| | |||| ||||| |||||||||| || ||||| ||    
T  23492317 aacaacaacaaacaagccttatctcactaagtggggtcggctacatggattaaatgacaccatagtgttctatcatatatcatatttctatccaactcat 23492218  T
Q  373 taaactctagatctttc 389  Q
    ||| | ||| |||||||    
T  23492217 taatcgctacatctttc 23492201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 297 - 361
Target Start/End: Complemental strand, 32931219 - 32931155
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcg 361  Q
    ||||||||| ||||||||||||| |||||| || | |||||| |||| ||||| | |||||||||    
T  32931219 cactaagtggggtcggctacatggatcaaattatgccataatgttctatcatacaccatatttcg 32931155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 349
Target Start/End: Complemental strand, 36545432 - 36545356
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcata 349  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| ||||||  |||||||| | |||| |||||    
T  36545432 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgtcatagtgttctatcata 36545356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 321 - 369
Target Start/End: Original strand, 43013239 - 43013287
Alignment:
Q  321 atcaaactacgtcataatattctgtcataaatcatatttcgattcaact 369  Q
    |||||| ||||||||||||  || ||||||||||||||||||| |||||    
T  43013239 atcaaattacgtcataataacctatcataaatcatatttcgatccaact 43013287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 389
Target Start/End: Complemental strand, 7678760 - 7678645
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 372  Q
    |||| |||||||||||| ||| | ||||||||| ||||||||||||| |||||||||| ||||||| || | | ||||| | ||||||||| ||||| ||    
T  7678760 aacaacaacaaccaagttttatcccactaagtggggtcggctacatggatcaaactacctcataatgtt-tattataaaccgtatttcgatccaactcat 7678662  T
Q  373 taaactctagatctttc 389  Q
    ||| |||||||||||||    
T  7678661 taatctctagatctttc 7678645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 281 - 389
Target Start/End: Complemental strand, 14668047 - 14667938
Alignment:
Q  281 acaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactc 379  Q
    |||||||||||||| | ||||||||| |||||| |||||| |||||| |||  |||||| |||| ||||||| |||| || ||| ||||| ||||| |||    
T  14668047 acaaccaagtcttatcccactaagtggggtcggttacatggatcaaattacaccataatgttctatcataaaccatacttggatccaactcattaatctc 14667948  T
Q  380 tagatctttc 389  Q
    ||||||||||    
T  14667947 tagatctttc 14667938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 274 - 389
Target Start/End: Original strand, 7359260 - 7359375
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 372  Q
    |||| |||||||||||||||  | ||||||||| |||| |||||||| |||||| ||||||||||| || | || |||| ||||||||||| ||||| ||    
T  7359260 aacaacaacaaccaagtcttgtcccactaagtggggtcagctacatggatcaaattacgtcataatgtt-tatcgtaaaccatatttcgatccaacttat 7359358  T
Q  373 taaactctagatctttc 389  Q
    ||| |||||||| ||||    
T  7359359 taatctctagatttttc 7359375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 299 - 389
Target Start/End: Original strand, 683726 - 683816
Alignment:
Q  299 ctaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    ||||||| ||| ||||||||| ||||||||||  |||||| |||| ||||||| ||||||| ||| ||||||||||| || || |||||||    
T  683726 ctaagtggggttggctacatggatcaaactacaacataatgttctatcataaaccatattttgatacaactaattaagctttaaatctttc 683816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 274 - 360
Target Start/End: Complemental strand, 6788349 - 6788263
Alignment:
Q  274 aacagcaacaaccaagtcttactcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttc 360  Q
    |||| |||| |||||||||| |  |||||||| ||||||||||||| |||||| ||||  ||||| |||| ||||||||||||||||    
T  6788349 aacaacaaccaccaagtctttcctactaagtgaggtcggctacatgaatcaaattacgctataatgttctatcataaatcatatttc 6788263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 389
Target Start/End: Complemental strand, 28165 - 28049
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 372  Q
    |||| ||| |||||||||||| || ||||| || |||| ||||||||||||||| || | |||| | |||| ||| ||||||||||| ||| ||||| ||    
T  28165 aacaacaaaaaccaagtcttatctaactaaatggggtcagctacatgtatcaaattatgccatagtgttctatcagaaatcatatttggatccaacttat 28066  T
Q  373 taaactctagatctttc 389  Q
    ||| ||||| |||||||    
T  28065 taacctctaaatctttc 28049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 389
Target Start/End: Original strand, 418061 - 418149
Alignment:
Q  301 aagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    ||||| ||||||||||||| |||||| |||| |||||| |||| ||||||| || |||| ||| ||||| ||||| ||||| |||||||    
T  418061 aagtggggtcggctacatggatcaaattacgccataatgttctatcataaaccacatttggatccaactcattaatctctaaatctttc 418149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 389
Target Start/End: Complemental strand, 9235305 - 9235214
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    ||||||||| ||||||||||||| |||||| || | |||||| |||| ||||||| ||||||||||| || || ||||| ||||| |||||||    
T  9235305 cactaagtg-ggtcggctacatggatcaaattatgccataatgttctatcataaaccatatttcgatccagctcattaatctctatatctttc 9235214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 388
Target Start/End: Complemental strand, 14911428 - 14911340
Alignment:
Q  300 taagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatcttt 388  Q
    |||||| ||||||||||||| ||||||  ||| |||| |||||| ||| ||||||||||| ||| ||||| ||||| ||||| ||||||    
T  14911428 taagtggggtcggctacatggatcaaatgacgccatagtattctatcaaaaatcatatttggatccaactcattaacctctaaatcttt 14911340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 369
Target Start/End: Original strand, 15252767 - 15252839
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 369  Q
    ||||||||| ||||||||||||| || ||||||| ||||||| |||| ||||||| | ||||||||| |||||    
T  15252767 cactaagtggggtcggctacatgaattaaactacatcataatgttctatcataaaccctatttcgatccaact 15252839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 385
Target Start/End: Complemental strand, 20367148 - 20367064
Alignment:
Q  301 aagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatc 385  Q
    ||||| ||| ||||| ||| |||||| ||||||||||| || ||||||||| ||||||| ||| ||||| ||||| |||||||||    
T  20367148 aagtggggttggctatatggatcaaattacgtcataatgttatgtcataaaccatatttggatccaactcattaatctctagatc 20367064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 389
Target Start/End: Complemental strand, 27998700 - 27998608
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    ||||||||| |||||| |||||| ||||||| ||||||||||||||| ||||| ||||| || | ||  |||| ||||| || ||||||||||    
T  27998700 cactaagtggggtcggttacatggatcaaacgacgtcataatattctatcatatatcatgttcctatctaactcattaatctgtagatctttc 27998608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 389
Target Start/End: Complemental strand, 30588706 - 30588614
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    |||||||||  |||||||||||| |||| |  |||||||||| |||| | ||||| ||||||||||| ||||| ||| | |||||||||||||    
T  30588706 cactaagtggagtcggctacatggatcatatcacgtcataatgttctattataaaccatatttcgatccaactcattcatctctagatctttc 30588614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 359
Target Start/End: Complemental strand, 11675813 - 11675727
Alignment:
Q  274 aacagcaacaaccaagtcttactca-ctaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 359  Q
    |||| ||||||||||| ||||  || ||||||| ||||||||||||| || |||||||| |||||| |||| ||||||| |||||||    
T  11675813 aacaacaacaaccaagccttatccaactaagtggggtcggctacatggattaaactacgccataatgttctatcataaaccatattt 11675727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 359
Target Start/End: Complemental strand, 18855890 - 18855804
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 359  Q
    |||| |||||||||||||||| | ||||||||| ||||||||||||| |||||| || |  ||||| |||| ||||||| |||||||    
T  18855890 aacaacaacaaccaagtcttatcccactaagtggggtcggctacatggatcaaattatgctataatgttctatcataaaccatattt 18855804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 381
Target Start/End: Complemental strand, 1275523 - 1275439
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactcta 381  Q
    ||||||||| ||||||||||||| ||||||  |||||||||| |||| ||| | | || |||| ||||||||| ||||| |||||    
T  1275523 cactaagtggggtcggctacatggatcaaatgacgtcataatgttctatcaaacaccaaatttggattcaactgattaacctcta 1275439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 389
Target Start/End: Original strand, 12576883 - 12576975
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    |||||| || |||||||||||||||| |||  ||  ||||||  ||| ||||| | |||||||| |||||||| ||||| |||||||||||||    
T  12576883 cactaattggggtcggctacatgtataaaatgacaccataatggtctatcatataccatatttctattcaactcattaatctctagatctttc 12576975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 369
Target Start/End: Complemental strand, 20457032 - 20456960
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 369  Q
    ||||||||| ||||||||||||| ||||||  ||| |||||| |||| ||||| |||| |||| |||||||||    
T  20457032 cactaagtggggtcggctacatggatcaaatgacgccataatgttctatcatacatcaaatttagattcaact 20456960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 326
Target Start/End: Complemental strand, 36551432 - 36551376
Alignment:
Q  271 taaaacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaa 326  Q
    ||||||| ||||||||||| |||| ||||||||||| ||||||||||||| ||||||    
T  36551432 taaaacaacaacaaccaagccttatctcactaagtggggtcggctacatggatcaaa 36551376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 369
Target Start/End: Original strand, 43557856 - 43557928
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 369  Q
    ||||||||| ||||||||||||  |||||  || |||||||| |||| ||||||| ||||||||||| |||||    
T  43557856 cactaagtggggtcggctacatagatcaacttaagtcataatgttctatcataaaccatatttcgatccaact 43557928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 26884712 - 26884774
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 359  Q
    ||||||||| ||||||||||||| |||||| | |||| || | |||| |||||||||||||||    
T  26884712 cactaagtggggtcggctacatggatcaaattgcgtcgtagtgttctatcataaatcatattt 26884774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 326
Target Start/End: Complemental strand, 4653535 - 4653482
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaa 326  Q
    |||| |||||||||||||||| ||||||||||| |||||| |||||| ||||||    
T  4653535 aacaacaacaaccaagtcttatctcactaagtggggtcggatacatgaatcaaa 4653482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 359
Target Start/End: Complemental strand, 38657101 - 38657040
Alignment:
Q  298 actaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 359  Q
    ||||||||  || ||||||||| ||||||| || ||||||| |||| |||||||||||||||    
T  38657101 actaagtgaagttggctacatgaatcaaacgacatcataatgttctatcataaatcatattt 38657040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 389
Target Start/End: Complemental strand, 38684764 - 38684647
Alignment:
Q  273 aaacagcaacaaccaagtcttactc-actaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaa 371  Q
    ||||| |||||||||||  ||| || |||||||| ||||  ||||||| ||||||  ||| |||||| |||| |||   | |||||||| || |||||||    
T  38684764 aaacaacaacaaccaagctttattccactaagtggggtcaactacatgaatcaaataacgccataatgttctatcaagtaccatatttctatccaactaa 38684665  T
Q  372 ttaaactctagatctttc 389  Q
    |||| |||||||||||||    
T  38684664 ttaatctctagatctttc 38684647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 297 - 369
Target Start/End: Complemental strand, 38685226 - 38685154
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 369  Q
    ||||||||| ||||||||||||| ||||||  ||| |||| | |||| ||||||| ||||||| ||| |||||    
T  38685226 cactaagtggggtcggctacatggatcaaatgacgccatattgttctatcataaaccatatttggatccaact 38685154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 389
Target Start/End: Complemental strand, 43475522 - 43475406
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 372  Q
    |||| ||||||||||| |||| | || ||||||  || |||||| || |||||| |||  |||||  ||||  |||||||||||||||||| ||||| ||    
T  43475522 aacaacaacaaccaagccttatcccattaagtggagttggctacgtggatcaaattacaccataacgttctaccataaatcatatttcgatccaactcat 43475423  T
Q  373 taaactctagatctttc 389  Q
    ||| |||| ||||||||    
T  43475422 taatctctggatctttc 43475406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 389
Target Start/End: Complemental strand, 36304220 - 36304133
Alignment:
Q  302 agtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 389  Q
    |||| ||||||||||||| |||||| |||| |||||| | || ||||||| ||||||| ||| ||||| ||||| |||||||||||||    
T  36304220 agtggggtcggctacatggatcaaattacgccataatgtcctatcataaaccatattttgatccaactcattaatctctagatctttc 36304133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 383
Target Start/End: Complemental strand, 32170683 - 32170578
Alignment:
Q  279 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaac 377  Q
    |||||||||||  ||| ||||||||||| ||||||||||||| |||||| || |||||||| || | ||||| | |||||||| || ||||| ||||| |    
T  32170683 caacaaccaagctttatctcactaagtggggtcggctacatggatcaaattatgtcataatgttatatcatagaccatatttctatccaacttattaatc 32170584  T
Q  378 tctaga 383  Q
    ||||||    
T  32170583 tctaga 32170578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 389
Target Start/End: Complemental strand, 49042215 - 49042103
Alignment:
Q  279 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcat-aaatcatatttcgattcaactaattaaa 376  Q
    ||||||||||| |||| ||||| ||||| ||||||||||||| |||||| |||| |||| | |||| |||| ||| ||||||| ||| ||||| |||||     
T  49042215 caacaaccaagccttatctcaccaagtggggtcggctacatggatcaaattacgccatagtgttctatcataaaaccatatttggatccaactcattaac 49042116  T
Q  377 ctctagatctttc 389  Q
    ||||| |||||||    
T  49042115 ctctaaatctttc 49042103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 265 - 359
Target Start/End: Original strand, 52927838 - 52927933
Alignment:
Q  265 aacaactaaaacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 359  Q
    |||||| | |||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| || | |||||| ||||||| |||| |||||||    
T  52927838 aacaacaacaacatcaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattatgccataatgttctgtcgtaaaccatattt 52927933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 274 - 388
Target Start/End: Complemental strand, 53519863 - 53519748
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 372  Q
    |||| ||||||||||| |||| ||||||||||| ||||||||||||| ||||||  |||||||| | |||| ||| ||| | ||||| ||| ||||| ||    
T  53519863 aacaacaacaaccaagccttatctcactaagtggggtcggctacatggatcaaatgacgtcatagtgttctatcaaaaaccttatttggatccaactcat 53519764  T
Q  373 taaactctagatcttt 388  Q
    | | ||||| ||||||    
T  53519763 tgacctctaaatcttt 53519748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 387
Target Start/End: Original strand, 311308 - 311422
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 372  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||||||||||  ||| |||| | |||| ||| ||| ||||| | ||| ||||||||    
T  311308 aacaacaacaaccaagccttatcccactaagtggggtcggctacatgtatcaaatgacgccatagtgttctatcaaaaaccatatctggatccaactaat 311407  T
Q  373 taaactctagatctt 387  Q
    | | ||||| |||||    
T  311408 tgacctctaaatctt 311422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 358
Target Start/End: Original strand, 23534576 - 23534654
Alignment:
Q  280 aacaaccaagtcttactcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatt 358  Q
    |||||||||| ||||  ||| ||||| ||||| ||||||| |||||| |||| |||||| |||| ||||||||||||||    
T  23534576 aacaaccaagccttatccacaaagtgaggtcgactacatggatcaaattacgccataatgttctatcataaatcatatt 23534654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 351
Target Start/End: Complemental strand, 46148311 - 46148233
Alignment:
Q  274 aacagcaacaaccaagtctt-actcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaa 351  Q
    |||| ||||||||||| ||| || ||||||||| ||||||||||||| |||||| |||| |||||| |||| |||||||    
T  46148311 aacaacaacaaccaagccttgacccactaagtggggtcggctacatggatcaaattacgccataatgttctatcataaa 46148233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 359
Target Start/End: Complemental strand, 48508518 - 48508432
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 359  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||| | |||| ||||||| |||||||    
T  48508518 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccatagtgttctatcataaaccatattt 48508432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 388
Target Start/End: Complemental strand, 49841894 - 49841784
Alignment:
Q  279 caacaaccaagtcttac-tcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaac 377  Q
    ||||||||||| ||||| || ||| ||| |||| |||||||| |||||| || | |||||| |||| ||||| | ||||||||||| ||||| ||||| |    
T  49841894 caacaaccaagccttacctcgctatgtggggtcagctacatggatcaaattatgccataatgttctatcatataccatatttcgatccaactcattaatc 49841795  T
Q  378 tctagatcttt 388  Q
    | |||||||||    
T  49841794 tttagatcttt 49841784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 279 - 359
Target Start/End: Complemental strand, 40991709 - 40991628
Alignment:
Q  279 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 359  Q
    ||||| |||||||||| ||||||||||| |||| |||||||| |||||| |||  |||||| |||| ||||||| |||||||    
T  40991709 caacagccaagtcttatctcactaagtggggtcagctacatggatcaaattacaccataatgttctatcataaaccatattt 40991628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 302 - 359
Target Start/End: Original strand, 54365003 - 54365060
Alignment:
Q  302 agtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 359  Q
    |||||||||||||||||| |||||| ||||||||| | |||| ||||||| |||||||    
T  54365003 agtgtggtcggctacatggatcaaattacgtcatagtgttctatcataaaccatattt 54365060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 359
Target Start/End: Original strand, 6780684 - 6780748
Alignment:
Q  295 ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 359  Q
    ||||||||||||||||||||||| | |||||| ||||||||||  |||| ||  |||||||||||    
T  6780684 ctcactaagtgtggtcggctacagggatcaaattacgtcataacgttctatctgaaatcatattt 6780748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 389
Target Start/End: Complemental strand, 15296185 - 15296074
Alignment:
Q  279 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaac 377  Q
    ||||||||||| |||| | ||||||||| ||||||| ||||| |||||| |||  |||||| |||| ||  ||||||||||| ||| ||| | ||||| |    
T  15296185 caacaaccaagccttatcccactaagtggggtcggccacatggatcaaattacaccataatgttctatccgaaatcatatttggatccaattcattaacc 15296086  T
Q  378 tctagatctttc 389  Q
    |||| |||||||    
T  15296085 tctaaatctttc 15296074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 369
Target Start/End: Complemental strand, 38060992 - 38060901
Alignment:
Q  279 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 369  Q
    |||||||||| ||||| | ||||||||| ||||||||||||| |||||| |||| |||  | |||| ||||||| ||||||| ||| |||||    
T  38060992 caacaaccaattcttatcccactaagtggggtcggctacatggatcaaattacgccatggtgttctatcataaaccatatttggatccaact 38060901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 321 - 375
Target Start/End: Original strand, 55384065 - 55384119
Alignment:
Q  321 atcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaa 375  Q
    |||||| ||||||||||  |||| ||||||||||||||| ||||||||| |||||    
T  55384065 atcaaattacgtcataacgttctatcataaatcatatttagattcaacttattaa 55384119  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 360
Target Start/End: Original strand, 5852337 - 5852390
Alignment:
Q  307 ggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttc 360  Q
    |||||||| |||| ||||||| ||||||||||| ||| ||||| ||||||||||    
T  5852337 ggtcggctgcatggatcaaacgacgtcataatactctatcatatatcatatttc 5852390  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 351
Target Start/End: Original strand, 30797826 - 30797899
Alignment:
Q  279 caacaaccaagtcttactc-actaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaa 351  Q
    ||||||||||| |||| || |||||||| |||||| |||||  |||||| ||||||||||| |||| |||||||    
T  30797826 caacaaccaagccttattccactaagtggggtcggttacatagatcaaattacgtcataatgttctatcataaa 30797899  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 351
Target Start/End: Complemental strand, 38850379 - 38850326
Alignment:
Q  298 actaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaa 351  Q
    |||||||| ||||||||||||| |||||| ||||||||| | |||| |||||||    
T  38850379 actaagtggggtcggctacatggatcaaattacgtcatagtgttctatcataaa 38850326  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 369
Target Start/End: Original strand, 48953453 - 48953514
Alignment:
Q  308 gtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 369  Q
    |||||||||||| || ||| ||||||||| | |||| ||||||||||||||| ||| |||||    
T  48953453 gtcggctacatggattaaattacgtcatagtgttctatcataaatcatatttggatccaact 48953514  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 369
Target Start/End: Complemental strand, 5169115 - 5169019
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 369  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| ||||||  ||| |||| | |||| ||| ||| ||||||| ||| |||||    
T  5169115 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcaaaaaccatatttggatccaact 5169019  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 299 - 359
Target Start/End: Original strand, 42510041 - 42510101
Alignment:
Q  299 ctaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 359  Q
    ||||||| ||||||||||||| |||||| |||| |||||| |||  ||||||| |||||||    
T  42510041 ctaagtggggtcggctacatggatcaaattacgccataatgttcaatcataaaccatattt 42510101  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 341
Target Start/End: Original strand, 49503567 - 49503635
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatatt 341  Q
    |||| ||||||||||| |||| | ||||||||  ||||||||||||| |||||| |||| |||||||||    
T  49503567 aacaacaacaaccaagccttatcccactaagtagggtcggctacatggatcaaattacgccataatatt 49503635  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 49888445 - 49888405
Alignment:
Q  298 actaagtgtggtcggctacatgtatcaaactacgtcataat 338  Q
    |||||||| ||||||||||||| |||||| |||||||||||    
T  49888445 actaagtggggtcggctacatggatcaaattacgtcataat 49888405  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 349
Target Start/End: Complemental strand, 52139083 - 52139007
Alignment:
Q  274 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcata 349  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| ||||||  |||||||| | |||| |||||    
T  52139083 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaataacgtcatagtgttctatcata 52139007  T

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Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 279 - 369
Target Start/End: Complemental strand, 82996 - 82905
Alignment:
Q  279 caacaaccaagtcttactc-actaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 369  Q
    ||||||||||| |||| || | |||||| ||||||||||||| ||||||  |||||||| | |||| ||||||||||||||| ||| |||||    
T  82996 caacaaccaagccttattccattaagtggggtcggctacatggatcaaatgacgtcatagtgttctatcataaatcatatttggatccaact 82905  T

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Target: scaffold0024; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 359
Target Start/End: Original strand, 48140 - 48201
Alignment:
Q  298 actaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 359  Q
    ||||||||  |||||||||||| |||||| |||| ||||||||||| ||||| | |||||||    
T  48140 actaagtggagtcggctacatggatcaaattacgccataatattctatcatacaccatattt 48201  T

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Target: scaffold0491 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 343
Target Start/End: Complemental strand, 3713 - 3650
Alignment:
Q  281 acaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattct 343  Q
    |||||||||||||| | ||||||||| |||||||||| || |||||| ||||||||||| ||||    
T  3713 acaaccaagtcttatcccactaagtggggtcggctacttggatcaaattacgtcataatgttct 3650  T

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Target: scaffold0050 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 297 - 357
Target Start/End: Original strand, 58249 - 58309
Alignment:
Q  297 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatat 357  Q
    ||||||||  ||||||||||||| |||||| |||| |||||| |||| ||||||| |||||    
T  58249 cactaagttgggtcggctacatggatcaaattacgacataatgttctatcataaaccatat 58309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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