View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0769_low_8 (Length: 495)

Name: NF0769_low_8
Description: NF0769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0769_low_8
NF0769_low_8
[»] chr8 (13 HSPs)
chr8 (241-406)||(2982497-2982662)
chr8 (1-121)||(2982813-2982933)
chr8 (279-391)||(2707759-2707871)
chr8 (280-406)||(2709014-2709140)
chr8 (5-94)||(2991901-2991990)
chr8 (276-389)||(3004604-3004717)
chr8 (1-121)||(2706525-2706638)
chr8 (283-391)||(2991581-2991692)
chr8 (270-334)||(3139900-3139964)
chr8 (273-377)||(3168048-3168152)
chr8 (270-334)||(3171533-3171597)
chr8 (272-322)||(2909011-2909061)
chr8 (119-155)||(2982748-2982784)
[»] chr6 (3 HSPs)
chr6 (5-94)||(18358282-18358371)
chr6 (283-322)||(18358071-18358110)
chr6 (356-406)||(18357981-18358031)
[»] chr1 (1 HSPs)
chr1 (240-389)||(10753369-10753518)
[»] chr7 (2 HSPs)
chr7 (271-334)||(7161798-7161861)
chr7 (271-392)||(3916874-3916995)


Alignment Details
Target: chr8 (Bit Score: 158; Significance: 7e-84; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 241 - 406
Target Start/End: Complemental strand, 2982662 - 2982497
Alignment:
Q  241 tcggtacctttctaatcccaaagactttcttttaagattatgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctgacattgttgag 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2982662 tcggtacctttctaatcccaaagactttcttttaagattatgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctcacattgttgag 2982563  T
Q  341 ctaagaatggacattcaatgatttctaaggtatgtaagtttgtaagacgtggtattgcctcaggca 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2982562 ctaagaatggacattcaatgatttctaaggtatgtaagtttgtaagacgtggcattgcctcaggca 2982497  T

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Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 2982933 - 2982813
Alignment:
Q  1 tatcaaagaatgaacaaacaaagtttctaaataagtggtgtacaaaactaaggaaattcagaaatattaaaatgtctttggtatctcagtatttagtcgt 100  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2982933 tatcagagaataaacaaacaaagtttctaaataagtggtgtacaaatctaaggaaattcagaaatattaaaatgtctttggtatctcagtatttagtcgt 2982834  T
Q  101 gatgcataaatatgattcttt 121  Q
    |||||||||||||||||||||    
T  2982833 gatgcataaatatgattcttt 2982813  T

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Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 279 - 391
Target Start/End: Original strand, 2707759 - 2707871
Alignment:
Q  279 tatgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctgacattgttgagctaagaatggacattcaatgatttctaaggtatgtaag 378  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||  | |  ||||| ||||||   | ||||||||||||||||||||    
T  2707759 tatgtttgggatgtgatcaattttagaccaagttgcacttgtttttgtctgacattcctcaattaagagtggacaactattgatttctaaggtatgtaag 2707858  T
Q  379 tttgtaagacgtg 391  Q
    |||||||||||||    
T  2707859 tttgtaagacgtg 2707871  T

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Target: chr8; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 280 - 406
Target Start/End: Original strand, 2709014 - 2709140
Alignment:
Q  280 atgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctgacattgttgagctaagaatggacattcaatgatttctaaggtatgtaagt 379  Q
    |||||||||||||||||||||||||| |||||| |||||| |||| |||||||||  | |  ||||| ||||||| |||||||||||||||||||||| |    
T  2709014 atgtttgggatgtgagcaattttagagcaagttacacttgcttctctctgacattcgtcaattaagagtggacatccaatgatttctaaggtatgtaatt 2709113  T
Q  380 ttgtaagacgtggtattgcctcaggca 406  Q
    ||||||| ||||| ||| | |||||||    
T  2709114 ttgtaaggcgtggcattccgtcaggca 2709140  T

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Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 2991990 - 2991901
Alignment:
Q  5 aaagaatgaacaaacaaagtttctaaataagtggtgtacaaaactaaggaaattcagaaatattaaaatgtctttggtatctcagtattt 94  Q
    ||||||| ||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||  ||||||||||||    
T  2991990 aaagaataaacaaccaaagttcctaaataagtggtgtacaaaactatggaaattcagaaatattaaaaagtctttgacatctcagtattt 2991901  T

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Target: chr8; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 276 - 389
Target Start/End: Complemental strand, 3004717 - 3004604
Alignment:
Q  276 gattatgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctgacattgttgagctaagaatggacattcaatgatttctaaggtatgt 375  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| || | |||| | |||||||| ||||| |||||||||   |    
T  3004717 gattatgtttgggatgtgagcaattttagaccaaattgcacttgtttctgtctggcattcttcaactaaaagtggacatttaatgaattctaaggtgcat 3004618  T
Q  376 aagtttgtaagacg 389  Q
    ||||| ||||||||    
T  3004617 aagttagtaagacg 3004604  T

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Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 2706525 - 2706638
Alignment:
Q  1 tatcaaagaatgaacaaacaaagtttctaaataagtggtgtacaaaactaaggaaattcagaaatattaaaatgtctttggtatctcagtatttagtcgt 100  Q
    ||||||||||||||||| |||||||  ||||||||||||    ||||||| ||||||||||||||||||||| ||||||||||  |||| | |||||||     
T  2706525 tatcaaagaatgaacaaccaaagttcttaaataagtggt----aaaactatggaaattcagaaatattaaaaagtctttggta--tcag-aattagtcgc 2706617  T
Q  101 gatgcataaatatgattcttt 121  Q
    ||||||| |||||||||||||    
T  2706618 gatgcatgaatatgattcttt 2706638  T

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Target: chr8; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 283 - 391
Target Start/End: Complemental strand, 2991692 - 2991581
Alignment:
Q  283 tttgggatgtgagcaattttagaccaagttgcacttgtttctgtctgacattgttgag---ctaagaatggacattcaatgatttctaaggtatgtaagt 379  Q
    |||||||||||||||||||||||||||  ||||| |||||||||| |  |||  | ||   |||||| || |||| |||||||||||||||| |||||||    
T  2991692 tttgggatgtgagcaattttagaccaaagtgcacctgtttctgtcaggaattcattagtatctaagattgaacatccaatgatttctaaggtgtgtaagt 2991593  T
Q  380 ttgtaagacgtg 391  Q
    ||||||||||||    
T  2991592 ttgtaagacgtg 2991581  T

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Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 270 - 334
Target Start/End: Original strand, 3139900 - 3139964
Alignment:
Q  270 ttttaagattatgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctgacatt 334  Q
    ||||||||||||||||||||||||||||||||| | ||| ||||||||||||| ||||| |||||    
T  3139900 ttttaagattatgtttgggatgtgagcaatttttgcccatgttgcacttgtttgtgtctcacatt 3139964  T

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Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 273 - 377
Target Start/End: Original strand, 3168048 - 3168152
Alignment:
Q  273 taagattatgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctgacattgttgagctaagaatggacattcaatgatttctaaggta 372  Q
    ||||||||||||||||||||||| |||||| ||||| ||||||||||||| ||||  ||||| || | ||||||  |||||| ||| |||||| | ||||    
T  3168048 taagattatgtttgggatgtgagaaattttggaccatgttgcacttgtttgtgtcacacattcttcaactaagaggggacatccaaagatttccagggta 3168147  T
Q  373 tgtaa 377  Q
    |||||    
T  3168148 tgtaa 3168152  T

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Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 334
Target Start/End: Original strand, 3171533 - 3171597
Alignment:
Q  270 ttttaagattatgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctgacatt 334  Q
    |||||||||||||||||| |||||||||||||| | ||| ||||||||||||| ||||| |||||    
T  3171533 ttttaagattatgtttggaatgtgagcaattttgggccacgttgcacttgtttgtgtctcacatt 3171597  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 322
Target Start/End: Original strand, 2909011 - 2909061
Alignment:
Q  272 ttaagattatgtttgggatgtgagcaattttagaccaagttgcacttgttt 322  Q
    ||||||||||||||||||||||||||| ||| | |||||| ||| ||||||    
T  2909011 ttaagattatgtttgggatgtgagcaactttgggccaagtagcatttgttt 2909061  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 2982784 - 2982748
Alignment:
Q  119 ttttgcccagccatatgcattcaaacaatgagtgaag 155  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  2982784 tttttcccagccatatgcattcaaacaatgagcgaag 2982748  T

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Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 18358371 - 18358282
Alignment:
Q  5 aaagaatgaacaaacaaagtttctaaataagtggtgtacaaaactaaggaaattcagaaatattaaaatgtctttggtatctcagtattt 94  Q
    ||||||| ||||| ||||||| |||||||||||||||||||||||| ||| ||||||||||||||||| |||||||  ||||||||||||    
T  18358371 aaagaataaacaaccaaagttcctaaataagtggtgtacaaaactatggatattcagaaatattaaaaagtctttgacatctcagtattt 18358282  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 283 - 322
Target Start/End: Complemental strand, 18358110 - 18358071
Alignment:
Q  283 tttgggatgtgagcaattttagaccaagttgcacttgttt 322  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  18358110 tttgggatgtgagcaattttagaccaagttgcacctgttt 18358071  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 406
Target Start/End: Complemental strand, 18358031 - 18357981
Alignment:
Q  356 caatgatttctaaggtatgtaagtttgtaagacgtggtattgcctcaggca 406  Q
    |||||||||||||||| |||||||||||||||||||| ||| | |||||||    
T  18358031 caatgatttctaaggtgtgtaagtttgtaagacgtggcattccttcaggca 18357981  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 240 - 389
Target Start/End: Original strand, 10753369 - 10753518
Alignment:
Q  240 gtcggtacctttctaatcccaaagactttcttttaagattatgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctgacattgttga 339  Q
    |||||||||||||| || ||||  |  || || ||||| |||||||||||||||||| ||||||| ||  ||||||||||||||| ||  |||||  | |    
T  10753369 gtcggtacctttctcatgccaataaaatttttgtaagactatgtttgggatgtgagcgattttaggcccggttgcacttgtttctctcaaacattcctca 10753468  T
Q  340 gctaagaatggacattcaatgatttctaaggtatgtaagtttgtaagacg 389  Q
      ||||| |||||||||||||||||||||||| | |||||| ||||||||    
T  10753469 attaagagtggacattcaatgatttctaaggtttttaagttggtaagacg 10753518  T

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Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 271 - 334
Target Start/End: Complemental strand, 7161861 - 7161798
Alignment:
Q  271 tttaagattatgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctgacatt 334  Q
    |||||||||||| ||||||||||||||||||||| ||| ||||||||||||| ||||| |||||    
T  7161861 tttaagattatgattgggatgtgagcaattttaggccatgttgcacttgtttgtgtctcacatt 7161798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 392
Target Start/End: Original strand, 3916874 - 3916995
Alignment:
Q  271 tttaagattatgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctgacattgttgagctaagaatggacattcaatgatttctaagg 370  Q
    ||||||||||||||||||||||||| ||||||   ||| ||||||||||||| ||||| ||||| || |  |||||  ||||||  ||||||||||| ||    
T  3916874 tttaagattatgtttgggatgtgagaaattttgtgccatgttgcacttgtttgtgtctcacattcttcaattaagaggggacatcgaatgatttctaggg 3916973  T
Q  371 tatgtaagtttgtaagacgtgg 392  Q
    | ||||| || | |||||||||    
T  3916974 tctgtaatttggcaagacgtgg 3916995  T

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