View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0769_low_9 (Length: 488)

Name: NF0769_low_9
Description: NF0769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0769_low_9
NF0769_low_9
[»] chr6 (26 HSPs)
chr6 (29-343)||(2954322-2954642)
chr6 (346-453)||(5582407-5582514)
chr6 (34-125)||(2978451-2978542)
chr6 (346-453)||(9047004-9047111)
chr6 (34-114)||(2937676-2937756)
chr6 (346-433)||(34188721-34188809)
chr6 (34-125)||(2974212-2974303)
chr6 (57-125)||(2929514-2929582)
chr6 (58-122)||(2952141-2952205)
chr6 (346-453)||(10397869-10397977)
chr6 (34-125)||(2934804-2934895)
chr6 (372-453)||(2960642-2960723)
chr6 (58-122)||(2927368-2927432)
chr6 (34-122)||(2964717-2964805)
chr6 (34-125)||(2983068-2983162)
chr6 (346-453)||(2836289-2836396)
chr6 (344-414)||(339266-339335)
chr6 (34-125)||(2658767-2658864)
chr6 (64-122)||(3003596-3003654)
chr6 (346-426)||(9695975-9696055)
chr6 (361-433)||(28614480-28614552)
chr6 (349-414)||(14939026-14939092)
chr6 (349-453)||(34249090-34249195)
chr6 (361-425)||(23663864-23663928)
chr6 (346-427)||(1781125-1781207)
chr6 (273-334)||(8349737-8349798)
[»] chr5 (29 HSPs)
chr5 (346-453)||(13694766-13694873)
chr5 (347-453)||(13694982-13695088)
chr5 (346-449)||(39605908-39606011)
chr5 (346-453)||(16567721-16567829)
chr5 (346-433)||(1672584-1672671)
chr5 (346-453)||(15503847-15503954)
chr5 (346-453)||(43228720-43228827)
chr5 (344-450)||(42989461-42989569)
chr5 (346-433)||(37779595-37779682)
chr5 (371-453)||(16667571-16667653)
chr5 (349-453)||(32953745-32953850)
chr5 (346-427)||(37607386-37607467)
chr5 (349-453)||(9738306-9738410)
chr5 (346-453)||(21068927-21069035)
chr5 (346-453)||(34443896-34444004)
chr5 (345-425)||(35468820-35468900)
chr5 (345-395)||(767230-767280)
chr5 (345-414)||(13942899-13942969)
chr5 (349-426)||(36234675-36234752)
chr5 (361-453)||(2476350-2476442)
chr5 (372-453)||(7162161-7162242)
chr5 (345-453)||(30248894-30249003)
chr5 (361-453)||(34846301-34846393)
chr5 (346-432)||(15675232-15675318)
chr5 (382-453)||(17192747-17192818)
chr5 (394-448)||(7159672-7159726)
chr5 (361-427)||(33006841-33006907)
chr5 (343-432)||(8214711-8214800)
chr5 (353-453)||(12267487-12267587)
[»] scaffold0024 (2 HSPs)
scaffold0024 (34-134)||(44713-44813)
scaffold0024 (34-129)||(35024-35119)
[»] chr2 (17 HSPs)
chr2 (334-453)||(34756598-34756718)
chr2 (361-453)||(42152604-42152696)
chr2 (346-453)||(4570556-4570663)
chr2 (361-452)||(304200-304291)
chr2 (344-453)||(13203696-13203806)
chr2 (381-453)||(25562890-25562962)
chr2 (346-415)||(33909456-33909525)
chr2 (346-453)||(41114946-41115054)
chr2 (378-453)||(16221078-16221153)
chr2 (376-453)||(15429140-15429217)
chr2 (392-453)||(28816669-28816730)
chr2 (333-410)||(41010394-41010471)
chr2 (350-450)||(22572780-22572880)
chr2 (361-433)||(2475769-2475841)
chr2 (363-427)||(27701998-27702062)
chr2 (140-182)||(1270536-1270578)
chr2 (346-395)||(15651169-15651218)
[»] chr7 (17 HSPs)
chr7 (346-433)||(41759717-41759804)
chr7 (34-125)||(3339230-3339321)
chr7 (346-453)||(5991494-5991602)
chr7 (360-453)||(815062-815155)
chr7 (346-452)||(30852275-30852380)
chr7 (350-427)||(19377319-19377395)
chr7 (349-453)||(22206763-22206868)
chr7 (349-453)||(22227871-22227976)
chr7 (346-433)||(28694148-28694236)
chr7 (346-453)||(35300517-35300625)
chr7 (368-427)||(21932881-21932940)
chr7 (396-453)||(3012279-3012336)
chr7 (346-453)||(41862396-41862503)
chr7 (346-423)||(38129111-38129186)
chr7 (346-449)||(25688271-25688375)
chr7 (269-325)||(32425271-32425327)
chr7 (401-453)||(7873297-7873349)
[»] chr1 (27 HSPs)
chr1 (346-453)||(6802177-6802284)
chr1 (346-453)||(11647071-11647178)
chr1 (345-458)||(4773936-4774050)
chr1 (347-453)||(44238936-44239042)
chr1 (346-453)||(14727248-14727356)
chr1 (346-449)||(49898345-49898449)
chr1 (350-453)||(33169359-33169462)
chr1 (345-453)||(25007393-25007502)
chr1 (353-421)||(41751909-41751977)
chr1 (345-453)||(24645983-24646091)
chr1 (390-450)||(16640366-16640426)
chr1 (346-453)||(27460626-27460734)
chr1 (346-453)||(27584090-27584198)
chr1 (375-458)||(4642142-4642225)
chr1 (346-449)||(8239210-8239313)
chr1 (361-415)||(4163388-4163442)
chr1 (384-453)||(25011613-25011682)
chr1 (345-453)||(37154067-37154176)
chr1 (349-453)||(33469018-33469121)
chr1 (346-453)||(44305342-44305450)
chr1 (382-453)||(9527012-9527083)
chr1 (346-437)||(37574864-37574955)
chr1 (345-451)||(6331605-6331710)
chr1 (274-319)||(13809949-13809994)
chr1 (346-410)||(24745334-24745398)
chr1 (273-323)||(7028239-7028289)
chr1 (274-323)||(24915125-24915174)
[»] chr8 (15 HSPs)
chr8 (344-453)||(21138135-21138245)
chr8 (347-453)||(34282974-34283081)
chr8 (361-451)||(12478081-12478171)
chr8 (346-458)||(38214689-38214802)
chr8 (346-458)||(27321922-27322034)
chr8 (361-453)||(8968276-8968368)
chr8 (344-453)||(24964961-24965071)
chr8 (361-414)||(39431790-39431843)
chr8 (345-452)||(28927989-28928096)
chr8 (350-426)||(3384135-3384211)
chr8 (124-182)||(34336235-34336293)
chr8 (197-260)||(36336659-36336722)
chr8 (361-419)||(376381-376439)
chr8 (346-427)||(36406604-36406686)
chr8 (348-380)||(13243025-13243057)
[»] chr4 (28 HSPs)
chr4 (346-453)||(50383819-50383927)
chr4 (346-449)||(15034554-15034658)
chr4 (346-449)||(32828146-32828250)
chr4 (347-449)||(1585642-1585744)
chr4 (346-432)||(2576091-2576177)
chr4 (345-453)||(6017046-6017155)
chr4 (345-453)||(40969154-40969263)
chr4 (347-453)||(41972514-41972622)
chr4 (346-433)||(25237495-25237583)
chr4 (346-433)||(9003488-9003575)
chr4 (346-453)||(31364067-31364174)
chr4 (346-453)||(32005846-32005953)
chr4 (344-407)||(52373668-52373731)
chr4 (344-433)||(9809723-9809812)
chr4 (344-453)||(31929120-31929229)
chr4 (347-432)||(49744972-49745057)
chr4 (346-425)||(8901735-8901814)
chr4 (346-419)||(36947447-36947520)
chr4 (361-453)||(4552132-4552224)
chr4 (346-433)||(9694019-9694106)
chr4 (346-453)||(10715585-10715694)
chr4 (346-453)||(10929355-10929464)
chr4 (346-453)||(2017514-2017622)
chr4 (361-453)||(11827103-11827195)
chr4 (344-453)||(4728475-4728585)
chr4 (382-453)||(46645559-46645630)
chr4 (349-453)||(14044279-14044384)
chr4 (276-320)||(3155553-3155597)
[»] scaffold0108 (1 HSPs)
scaffold0108 (346-427)||(21101-21183)
[»] chr3 (24 HSPs)
chr3 (345-453)||(41218460-41218569)
chr3 (346-458)||(9600287-9600399)
chr3 (346-453)||(37516567-37516674)
chr3 (346-453)||(53651835-53651942)
chr3 (349-450)||(33179204-33179306)
chr3 (344-453)||(41199967-41200077)
chr3 (346-458)||(53987800-53987913)
chr3 (346-453)||(26278289-26278395)
chr3 (352-453)||(41358704-41358805)
chr3 (344-444)||(38239388-38239488)
chr3 (34-125)||(49613641-49613732)
chr3 (346-453)||(44047520-44047628)
chr3 (346-453)||(25391901-25392009)
chr3 (346-453)||(47511721-47511826)
chr3 (31-114)||(49618640-49618723)
chr3 (380-453)||(7500915-7500988)
chr3 (346-427)||(54845987-54846068)
chr3 (347-447)||(43447476-43447571)
chr3 (346-449)||(44625634-44625738)
chr3 (346-453)||(12909763-12909864)
chr3 (348-458)||(14461007-14461114)
chr3 (274-320)||(30956700-30956746)
chr3 (274-320)||(30972512-30972558)
chr3 (351-449)||(43700235-43700333)
[»] scaffold0638 (1 HSPs)
scaffold0638 (361-450)||(4045-4134)
[»] scaffold0075 (2 HSPs)
scaffold0075 (348-453)||(6843-6949)
scaffold0075 (345-453)||(11455-11562)
[»] scaffold0021 (1 HSPs)
scaffold0021 (346-414)||(109427-109494)
[»] scaffold0263 (1 HSPs)
scaffold0263 (120-182)||(5799-5861)


Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 29 - 343
Target Start/End: Complemental strand, 2954642 - 2954322
Alignment:
Q  29 actccaaacaaaatttcggtctgatcatcaactcttaattgaggaattccaagaactccttgtgaaaacctcaagtcaagtaaacactcacttttaggct 128  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2954642 actccaaacaaaatatcggtctgatcatcaactcttaattgaggaattccaagaactcgttgtgaaaacctcaagtcaagtaaacactcacttttaggct 2954543  T
Q  129 ttgtttggagatttggagggaaggagaatggaagactt------tgagggatggaaaatagagaannnnnnnnnaaacttaggtagtaaatatctccctc 222  Q
    ||||||||||||||||||||||||||||||||||||||      |||||||||||||||| ||||         |||||||||| |||||||||||||||    
T  2954542 ttgtttggagatttggagggaaggagaatggaagactttgagtttgagggatggaaaataaagaatttttttttaaacttaggtggtaaatatctccctc 2954443  T
Q  223 aaatttaaattttatgtgcaaatattcccttcaaattttaaacttctaagttatacaaaaactatttaactatattttatctttagctaaagaaatagtt 322  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2954442 aaatttaaaatttatgtgcaaatattcccttcaaattttaaacttctaagttatacaaaaactatttaactatattttatctttagctaaggaaatagtt 2954343  T
Q  323 tttatacaaacaatcgtcatg 343  Q
    ||||||||| |||| ||||||    
T  2954342 tttatacaagcaattgtcatg 2954322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 346 - 453
Target Start/End: Original strand, 5582407 - 5582514
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 445  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||| |||| |||||||||||||||||  || | ||||| ||||||||| |||||||    
T  5582407 caggggcggagccacccccagctagcctgggcactagcccaggctcaacttctactttctttgtagcaagcacagctattactagaacctctcgcttttc 5582506  T
Q  446 ctgcggat 453  Q
    ||||||||    
T  5582507 ctgcggat 5582514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 34 - 125
Target Start/End: Complemental strand, 2978542 - 2978451
Alignment:
Q  34 aaacaaaatttcggtctgatcatcaactcttaattgaggaattccaagaactccttgtgaaaacctcaagtcaagtaaacactcacttttag 125  Q
    ||||||||||||||||  ||| ||||||||||||||||||||| |||||||||||   ||||||||||| ||||||||||||||||||||||    
T  2978542 aaacaaaatttcggtcccatcctcaactcttaattgaggaatttcaagaactcctcccgaaaacctcaaatcaagtaaacactcacttttag 2978451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 346 - 453
Target Start/End: Complemental strand, 9047111 - 9047004
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 445  Q
    |||||||||||||| |||||||||||||||||    | ||||  |||||||||||||||||||||| ||||||||||||||| ||||  | | |||||||    
T  9047111 caggggcggagccacccccagctagcctgggctagtgtccagactcagcttcaactttctttgtagtaagtccaaccattactagaatttttagcttttc 9047012  T
Q  446 ctgcggat 453  Q
    ||||||||    
T  9047011 ctgcggat 9047004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 2937756 - 2937676
Alignment:
Q  34 aaacaaaatttcggtctgatcatcaactcttaattgaggaattccaagaactccttgtgaaaacctcaagtcaagtaaaca 114  Q
    ||||||||||||||||  ||| |||||| |||||||||||||| |||||||||||  |||||| |||||||||||||||||    
T  2937756 aaacaaaatttcggtcgaatcctcaactgttaattgaggaatttcaagaactcctcctgaaaatctcaagtcaagtaaaca 2937676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 346 - 433
Target Start/End: Original strand, 34188721 - 34188809
Alignment:
Q  346 caggggcggagccatc-cccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 433  Q
    ||||||||||| || | ||||||||||||||||||||||| ||| |||||| ||||||||||||||||||| ||| ||||||| |||||    
T  34188721 caggggcggagtcacctcccagctagcctgggcactagccgaggctcagctccaactttctttgtagcaagcccagccattactagaac 34188809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 34 - 125
Target Start/End: Complemental strand, 2974303 - 2974212
Alignment:
Q  34 aaacaaaatttcggtctgatcatcaactcttaattgaggaattccaagaactccttgtgaaaacctcaagtcaagtaaacactcacttttag 125  Q
    ||||||||||||||||  ||| | |||| |||||||||||||| |||||||||||   ||||||||||||||| ||||||| ||||||||||    
T  2974303 aaacaaaatttcggtcccatcttgaactgttaattgaggaatttcaagaactcctcccgaaaacctcaagtcatgtaaacattcacttttag 2974212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 57 - 125
Target Start/End: Complemental strand, 2929582 - 2929514
Alignment:
Q  57 caactcttaattgaggaattccaagaactccttgtgaaaacctcaagtcaagtaaacactcacttttag 125  Q
    ||||| |||||||||||||| |||||||||||  ||||||||| |||||||||||||||| ||||||||    
T  2929582 caactgttaattgaggaatttcaagaactcctcctgaaaaccttaagtcaagtaaacacttacttttag 2929514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 2952205 - 2952141
Alignment:
Q  58 aactcttaattgaggaattccaagaactccttgtgaaaacctcaagtcaagtaaacactcacttt 122  Q
    |||| |||||||||||||| ||||||||||||  ||||||||||||||||||||||||| |||||    
T  2952205 aacttttaattgaggaatttcaagaactccttccgaaaacctcaagtcaagtaaacacttacttt 2952141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 346 - 453
Target Start/End: Complemental strand, 10397977 - 10397869
Alignment:
Q  346 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 444  Q
    |||||||||||||| |||| |||||||||||||    ||||||| |||||| ||||||||||||||||||  ||||||||||| ||||  | | ||||||    
T  10397977 caggggcggagccaccccccagctagcctgggctagtgcccaggctcagctccaactttctttgtagcaaacccaaccattacgagaatttttagctttt 10397878  T
Q  445 cctgcggat 453  Q
    |||||||||    
T  10397877 cctgcggat 10397869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 34 - 125
Target Start/End: Complemental strand, 2934895 - 2934804
Alignment:
Q  34 aaacaaaatttcggtctgatcatcaactcttaattgaggaattccaagaactccttgtgaaaacctcaagtcaagtaaacactcacttttag 125  Q
    |||| ||||||| |||  ||| |||||  |||||||||||||| |||||||||||   ||||||||||||||||||||||||| ||||||||    
T  2934895 aaacgaaatttcagtcctatcgtcaaccgttaattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacacttacttttag 2934804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 372 - 453
Target Start/End: Original strand, 2960642 - 2960723
Alignment:
Q  372 ctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 453  Q
    ||||| ||||||||||| |||||| ||| ||||||||||||||||||| ||| ||| ||||| | | |||||||||||||||    
T  2960642 ctgggtactagcccaggctcagctccaattttctttgtagcaagtccagccaatactagaacttttagcttttcctgcggat 2960723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 2927432 - 2927368
Alignment:
Q  58 aactcttaattgaggaattccaagaactccttgtgaaaacctcaagtcaagtaaacactcacttt 122  Q
    |||| |||||||||||||| |||||||||||   ||||||||||||||||||||||||| |||||    
T  2927432 aacttttaattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacacttacttt 2927368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 2964805 - 2964717
Alignment:
Q  34 aaacaaaatttcggtctgatcatcaactcttaattgaggaattccaagaactccttgtgaaaacctcaagtcaagtaaacactcacttt 122  Q
    ||||| ||||||||||  ||| | | || |||||||||||||| |||||||||||   ||||||||||||||||||||||||| |||||    
T  2964805 aaacataatttcggtcccatcgtgagctattaattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacacttacttt 2964717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 34 - 125
Target Start/End: Complemental strand, 2983162 - 2983068
Alignment:
Q  34 aaacaaaatttcggtct---gatcatcaactcttaattgaggaattccaagaactccttgtgaaaacctcaagtcaagtaaacactcacttttag 125  Q
    ||||||||||||||||    |||||| |||| |||||||||||||| |||||||||||   |||||||||||||||  |||||||| ||||||||    
T  2983162 aaacaaaatttcggtcgtccgatcatgaactattaattgaggaatttcaagaactcctcccgaaaacctcaagtcatataaacacttacttttag 2983068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 453
Target Start/End: Complemental strand, 2836396 - 2836289
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 445  Q
    |||||||||||||| ||||||||| |  |||||||||  |||| | |||| ||||||||||||||||||  ||||||||| | ||||| | | ||||||     
T  2836396 caggggcggagccacccccagctaactcgggcactagttcaggtttagctccaactttctttgtagcaaacccaaccattcctagaacttttagcttttt 2836297  T
Q  446 ctgcggat 453  Q
    ||||||||    
T  2836296 ctgcggat 2836289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 344 - 414
Target Start/End: Original strand, 339266 - 339335
Alignment:
Q  344 atcaggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaa 414  Q
    |||| ||||||||||| |||||||||||||||||| ||||||||  ||||||  |||||||||||||||||    
T  339266 atcaagggcggagcca-ccccagctagcctgggcattagcccagattcagctctaactttctttgtagcaa 339335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 34 - 125
Target Start/End: Original strand, 2658767 - 2658864
Alignment:
Q  34 aaacaaaatttcggtctgatcatcaactcttaattgaggaattccaagaactcct------tgtgaaaacctcaagtcaagtaaacactcacttttag 125  Q
    |||||||||||| |||  ||| |||||  |||||||||||||| |||||||||||      | |||||||||||||||||||||||||| ||||||||    
T  2658767 aaacaaaatttcagtcctatcgtcaaccgttaattgaggaatttcaagaactcctcctgattttgaaaacctcaagtcaagtaaacacttacttttag 2658864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 64 - 122
Target Start/End: Original strand, 3003596 - 3003654
Alignment:
Q  64 taattgaggaattccaagaactccttgtgaaaacctcaagtcaagtaaacactcacttt 122  Q
    ||||||||||||| |||||||||||   ||||||||||||||||||||||||| |||||    
T  3003596 taattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacacttacttt 3003654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 426
Target Start/End: Original strand, 9695975 - 9696055
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccatta 426  Q
    ||||||||||| || |||||||||||||||||    ||||||| || ||| ||||||||||||||||||| |||| |||||    
T  9695975 caggggcggagtcacccccagctagcctgggctagtgcccaggctcggctccaactttctttgtagcaagcccaatcatta 9696055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 433
Target Start/End: Complemental strand, 28614552 - 28614480
Alignment:
Q  361 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 433  Q
    ||||||||||| |||||||||||||||| |||||| ||| | ||||||||||||| | | ||||||| |||||    
T  28614552 ccccagctagcgtgggcactagcccaggctcagctccaattatctttgtagcaagcctagccattactagaac 28614480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 414
Target Start/End: Complemental strand, 14939092 - 14939026
Alignment:
Q  349 gggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaa 414  Q
    ||||||||||| |||| ||||||||||| ||||||| |||| |||||| ||| ||||||||||||||    
T  14939092 gggcggagccaccccccagctagcctggacactagctcaggctcagctccaattttctttgtagcaa 14939026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 349 - 453
Target Start/End: Complemental strand, 34249195 - 34249090
Alignment:
Q  349 gggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcct 447  Q
    ||||||||||| |||| ||||||| |||||    ||||||  ||| || ||||||||||||||||||| ||||||||||| ||||  | | |||||||||    
T  34249195 gggcggagccaccccccagctagcttgggctagtgcccagactcaactccaactttctttgtagcaagcccaaccattactagaatttttagcttttcct 34249096  T
Q  448 gcggat 453  Q
    ||||||    
T  34249095 gcggat 34249090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 425
Target Start/End: Complemental strand, 23663928 - 23663864
Alignment:
Q  361 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccatt 425  Q
    |||||||||||||||||    ||||||| || ||| ||||||||||||||||||| |||||||||    
T  23663928 ccccagctagcctgggctagtgcccaggctcggctccaactttctttgtagcaagcccaaccatt 23663864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 427
Target Start/End: Complemental strand, 1781207 - 1781125
Alignment:
Q  346 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattac 427  Q
    |||||||||||||| |||| |||||| ||||||    ||||||| || ||| ||||||||||||||||||  |||||||||||    
T  1781207 caggggcggagccaccccccagctagtctgggctagtgcccaggttcggctccaactttctttgtagcaaacccaaccattac 1781125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 334
Target Start/End: Original strand, 8349737 - 8349798
Alignment:
Q  273 ttatacaaaaactatttaactatattttatctttagctaaagaaatagtttttatacaaaca 334  Q
    ||||| |||||| |||||||| |||||||||||| | || ||||||||||| || |||||||    
T  8349737 ttatataaaaacaatttaactttattttatcttttgttagagaaatagtttatacacaaaca 8349798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 346 - 453
Target Start/End: Original strand, 13694766 - 13694873
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 445  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| ||||||| ||||| ||| |||||||    
T  13694766 caggggcggagccacccccagctagcctgggcactagcccaggctcaacttcaactttctttgtagcaagcccatccattactagaacttctcgcttttc 13694865  T
Q  446 ctgcggat 453  Q
    ||| ||||    
T  13694866 ctgtggat 13694873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 347 - 453
Target Start/End: Original strand, 13694982 - 13695088
Alignment:
Q  347 aggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcc 446  Q
    ||||||||||||| ||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||| || ||||||| ||||| ||| ||||||||    
T  13694982 aggggcggagccacccctagctagcctgggcactagctcaggctcagcttcaactttctttgtagcaagttcatccattactagaacttctcgcttttcc 13695081  T
Q  447 tgcggat 453  Q
    || ||||    
T  13695082 tgtggat 13695088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 346 - 449
Target Start/End: Complemental strand, 39606011 - 39605908
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 445  Q
    |||||||||||||| |||||||||||||| ||||||||||||  |||||||| |||||||||||| |||||||| ||||||  ||||||||||||||||     
T  39606011 caggggcggagccacccccagctagcctgagcactagcccagactcagcttctactttctttgtaacaagtccatccattattagaacctcttgcttttt 39605912  T
Q  446 ctgc 449  Q
    ||||    
T  39605911 ctgc 39605908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 346 - 453
Target Start/End: Original strand, 16567721 - 16567829
Alignment:
Q  346 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 444  Q
    |||||||||||||| |||| |||||||||||||||||||||||| |||||| ||| ||||||||||||||||||| ||||||| ||||| | | ||||||    
T  16567721 caggggcggagccaccccccagctagcctgggcactagcccaggctcagctccaattttctttgtagcaagtccagccattactagaacttttagctttt 16567820  T
Q  445 cctgcggat 453  Q
    | |||||||    
T  16567821 cttgcggat 16567829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 346 - 433
Target Start/End: Complemental strand, 1672671 - 1672584
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 433  Q
    |||||||||||||| ||||||||||||||||||||||| |||| |||||| ||| ||||||||||||||  ||||||||||| |||||    
T  1672671 caggggcggagccacccccagctagcctgggcactagctcaggctcagctccaattttctttgtagcaatcccaaccattactagaac 1672584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 346 - 453
Target Start/End: Original strand, 15503847 - 15503954
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 445  Q
    |||||||||||||| ||| |||||| ||||||||||||||||| ||| |||||| ||||||||||||||| | ||||||||| ||||  | | |||||||    
T  15503847 caggggcggagccaccccaagctagtctgggcactagcccaggctcaccttcaaatttctttgtagcaagcctaaccattactagaatttttagcttttc 15503946  T
Q  446 ctgcggat 453  Q
    ||||||||    
T  15503947 ctgcggat 15503954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 346 - 453
Target Start/End: Complemental strand, 43228827 - 43228720
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 445  Q
    |||||||||||||| |||||||||||||||||||||||| ||| ||| || ||| ||||||||||||||| ||| ||||||| ||||| | | |||||||    
T  43228827 caggggcggagccacccccagctagcctgggcactagccaaggctcaactccaattttctttgtagcaagcccagccattactagaacttttagcttttc 43228728  T
Q  446 ctgcggat 453  Q
    || |||||    
T  43228727 ctacggat 43228720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 344 - 450
Target Start/End: Original strand, 42989461 - 42989569
Alignment:
Q  344 atcaggggcggagccatcccc-agctagcctggg-cactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgct 441  Q
    |||||||||||||||| |||| |||||||||||| ||||||||||||||||||||| ||||||||||  ||||| ||| ||||||| ||||| ||| |||    
T  42989461 atcaggggcggagccaccccccagctagcctggggcactagcccaggatcagcttctactttctttgaggcaagcccagccattactagaacttctcgct 42989560  T
Q  442 tttcctgcg 450  Q
    ||| |||||    
T  42989561 ttttctgcg 42989569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 346 - 433
Target Start/End: Original strand, 37779595 - 37779682
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 433  Q
    |||||||||||||| |||||||||||||||||||||| ||||| ||| || ||| |||||||||||||||| || ||||||| |||||    
T  37779595 caggggcggagccacccccagctagcctgggcactagtccaggctcaactccaattttctttgtagcaagttcagccattactagaac 37779682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 371 - 453
Target Start/End: Complemental strand, 16667653 - 16667571
Alignment:
Q  371 cctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 453  Q
    |||||||||||||||||  |||||| ||||||||||||||||||||||| ||||||| ||||| | | |||||||||||||||    
T  16667653 cctgggcactagcccagactcagctccaactttctttgtagcaagtccagccattactagaacttttagcttttcctgcggat 16667571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 349 - 453
Target Start/End: Complemental strand, 32953850 - 32953745
Alignment:
Q  349 gggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcct 447  Q
    ||||||||||| |||| |||||||||||||||||||| ||| |||||| ||| ||||||||||||||| ||| ||||||| ||||| | | |||||||||    
T  32953850 gggcggagccaccccccagctagcctgggcactagccgaggctcagctccaattttctttgtagcaagcccagccattactagaacttttagcttttcct 32953751  T
Q  448 gcggat 453  Q
     |||||    
T  32953750 acggat 32953745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 346 - 427
Target Start/End: Original strand, 37607386 - 37607467
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattac 427  Q
    |||||||||||||| |||||||||||||||||||||| ||||| ||| || ||| |||||||||||||||| || |||||||    
T  37607386 caggggcggagccacccccagctagcctgggcactagtccaggctcaactccaattttctttgtagcaagttcagccattac 37607467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 349 - 453
Target Start/End: Original strand, 9738306 - 9738410
Alignment:
Q  349 gggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctg 448  Q
    ||||||||||| ||||||||||  || |||||||||| |  |||||||| |||||||||| |||||| ||||||||||| ||||| ||| || |||||||    
T  9738306 gggcggagccacccccagctagtttgtgcactagccctgactcagcttctactttctttgaagcaagcccaaccattactagaacttctcgcatttcctg 9738405  T
Q  449 cggat 453  Q
    |||||    
T  9738406 cggat 9738410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 346 - 453
Target Start/End: Original strand, 21068927 - 21069035
Alignment:
Q  346 caggggcggagccat-ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 444  Q
    ||||||||||||||  ||||||||||||||||||||||| |||| ||| ||  |||||||||||||| ||| ||||||||||| ||||  | | || |||    
T  21068927 caggggcggagccacaccccagctagcctgggcactagctcaggctcaactctaactttctttgtagtaagcccaaccattactagaatttttagccttt 21069026  T
Q  445 cctgcggat 453  Q
    |||||||||    
T  21069027 cctgcggat 21069035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 346 - 453
Target Start/End: Original strand, 34443896 - 34444004
Alignment:
Q  346 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 444  Q
    |||||||||||||| |||| |||||||||||||    ||||||| |||||| ||||||||||||||||||| || |||||||| ||||  | | ||||||    
T  34443896 caggggcggagccaccccccagctagcctgggctagtgcccaggctcagctccaactttctttgtagcaagccctaccattactagaatttgtagctttt 34443995  T
Q  445 cctgcggat 453  Q
    |||||||||    
T  34443996 cctgcggat 34444004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 425
Target Start/End: Original strand, 35468820 - 35468900
Alignment:
Q  345 tcaggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccatt 425  Q
    ||||||||||||||| |||||||||||||||||    ||||||| || ||| ||||||||||||||||||| |||||||||    
T  35468820 tcaggggcggagccacccccagctagcctgggctagtgcccaggctcggctccaactttctttgtagcaagcccaaccatt 35468900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 345 - 395
Target Start/End: Original strand, 767230 - 767280
Alignment:
Q  345 tcaggggcggagccatccccagctagcctgggcactagcccaggatcagct 395  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  767230 tcaggggcggagccacccccagctagcctgggcactagcccaggctcagct 767280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 345 - 414
Target Start/End: Complemental strand, 13942969 - 13942899
Alignment:
Q  345 tcaggggcggagccatc-cccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaa 414  Q
    ||||||||||||||| | |||| |||||||||||||||||||||| |||| | ||||||||||||||||||    
T  13942969 tcaggggcggagccacctcccaactagcctgggcactagcccaggctcaggtccaactttctttgtagcaa 13942899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 349 - 426
Target Start/End: Complemental strand, 36234752 - 36234675
Alignment:
Q  349 gggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccatta 426  Q
    ||||||||||| |||||| |||||||| |||||||||||  |||||| ||| ||||||||||||||| ||| ||||||    
T  36234752 gggcggagccacccccagttagcctggacactagcccagactcagctccaattttctttgtagcaagcccagccatta 36234675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 361 - 453
Target Start/End: Original strand, 2476350 - 2476442
Alignment:
Q  361 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 453  Q
    |||||||||||||||||    ||||||| |||||| ||| |||||||||||||||||| |||||||| ||||  | | |||||||||||||||    
T  2476350 ccccagctagcctgggctagtgcccaggctcagctccaattttctttgtagcaagtcctaccattactagaatttttagcttttcctgcggat 2476442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 372 - 453
Target Start/End: Complemental strand, 7162242 - 7162161
Alignment:
Q  372 ctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 453  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||| ||| ||||||| | ||  | | |||||||||||||||    
T  7162242 ctgggcactagcccaggctcagctccaattttctttgtagcaagcccagccattactaaaaattttagcttttcctgcggat 7162161  T

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Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 345 - 453
Target Start/End: Original strand, 30248894 - 30249003
Alignment:
Q  345 tcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttt 443  Q
    ||||||||||||||| |||| |||||||||||||    ||||||| || ||| ||||||||||||||||||| ||||| ||||| ||||  | | |||||    
T  30248894 tcaggggcggagccaccccccagctagcctgggctagtgcccaggctcggctccaactttctttgtagcaagcccaactattactagaatttttagcttt 30248993  T
Q  444 tcctgcggat 453  Q
    | ||||||||    
T  30248994 ttctgcggat 30249003  T

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Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 453
Target Start/End: Original strand, 34846301 - 34846393
Alignment:
Q  361 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 453  Q
    |||||||||||||||||    ||||||| || ||| ||||||||||||||||||||| ||||||||| ||||  | | |||| ||||||||||    
T  34846301 ccccagctagcctgggctagtgcccaggctcggctccaactttctttgtagcaagtcaaaccattactagaatttttagcttatcctgcggat 34846393  T

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Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 432
Target Start/End: Original strand, 15675232 - 15675318
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 432  Q
    |||||||||||||| |||||||||||||||||    ||||||| || |||  |||||||||||| ||||  ||||||||||| ||||    
T  15675232 caggggcggagccacccccagctagcctgggctagtgcccaggctcggctctaactttctttgttgcaaacccaaccattactagaa 15675318  T

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Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 453
Target Start/End: Complemental strand, 17192818 - 17192747
Alignment:
Q  382 gcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 453  Q
    ||||||| |||||| |||||||||||||||||||  || ||||||| ||||| | | ||| |||||||||||    
T  17192818 gcccaggctcagctccaactttctttgtagcaagctcagccattactagaacttttagctcttcctgcggat 17192747  T

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Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 448
Target Start/End: Complemental strand, 7159726 - 7159672
Alignment:
Q  394 cttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctg 448  Q
    |||| |||||||||||||||||  || ||||||| ||||||||| ||||||||||    
T  7159726 cttctactttctttgtagcaagctcagccattactagaacctctcgcttttcctg 7159672  T

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Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 427
Target Start/End: Original strand, 33006841 - 33006907
Alignment:
Q  361 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattac 427  Q
    |||||||||||||||||    ||||||| || ||| ||||||||||||||||||  |||||||||||    
T  33006841 ccccagctagcctgggctaatgcccaggctcggctccaactttctttgtagcaaacccaaccattac 33006907  T

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Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 432
Target Start/End: Complemental strand, 8214800 - 8214711
Alignment:
Q  343 gatcaggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 432  Q
    |||||| |||||| ||| | |||||||||||| ||||||| ||||  | |||| ||||||| |||||| |||||| | ||||||| ||||    
T  8214800 gatcagaggcggaaccacctccagctagcctgagcactagtccagacttagctccaactttttttgtaacaagtctagccattactagaa 8214711  T

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Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 353 - 453
Target Start/End: Complemental strand, 12267587 - 12267487
Alignment:
Q  353 ggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcgga 452  Q
    ||||||| ||||| ||||| |||||||||  | ||| | |||| ||||||||||||||||||| | | | ||||| ||||| | | |||||||||| |||    
T  12267587 ggagccacccccaactagcttgggcactaatctaggcttagctccaactttctttgtagcaagcctagcaattactagaacttttagcttttcctgtgga 12267488  T
Q  453 t 453  Q
    |    
T  12267487 t 12267487  T

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Target: scaffold0024 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 34 - 134
Target Start/End: Original strand, 44713 - 44813
Alignment:
Q  34 aaacaaaatttcggtctgatcatcaactcttaattgaggaattccaagaactccttgtgaaaacctcaagtcaagtaaacactcacttttaggctttgtt 133  Q
    |||||||||||| |  ||||||||| ||||||||||||||||| ||||||||| || |||||||||||| ||||||||||||||||||||||||||||||    
T  44713 aaacaaaatttcaggttgatcatcagctcttaattgaggaatttcaagaactctttctgaaaacctcaaatcaagtaaacactcacttttaggctttgtt 44812  T
Q  134 t 134  Q
    |    
T  44813 t 44813  T

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Target: scaffold0024; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 35024 - 35119
Alignment:
Q  34 aaacaaaatttcggtctgatcatcaactcttaattgaggaattccaagaactccttgtgaaaacctcaagtcaagtaaacactcacttttaggctt 129  Q
    ||||||||||||||||  ||| ||||||  |||| |||||||| |||| |||||||  ||||||| ||||||||||||||||||||||||||||||    
T  35024 aaacaaaatttcggtcccatcctcaacttctaatcgaggaatttcaagcactccttccgaaaaccccaagtcaagtaaacactcacttttaggctt 35119  T

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Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 334 - 453
Target Start/End: Original strand, 34756598 - 34756718
Alignment:
Q  334 aatcgtcatgatcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 432  Q
    |||| |||| ||||||| |||||||| |||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||  || |||| ||||    
T  34756598 aatcatcataatcagggacggagccaccccccagctagcctgggcactagcccaggctcagcttctactttctttgtagcaagtccggccgttactagaa 34756697  T
Q  433 cctcttgcttttcctgcggat 453  Q
    |||||  ||||||||||||||    
T  34756698 cctctcacttttcctgcggat 34756718  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 361 - 453
Target Start/End: Complemental strand, 42152696 - 42152604
Alignment:
Q  361 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 453  Q
    |||||||||| ||||||||||| ||||| |||||||| |||||||||||||||| |||| ||||||  ||||||||| |||||||||||||||    
T  42152696 ccccagctagtctgggcactagtccaggttcagcttctactttctttgtagcaaatccagccattattagaacctctcgcttttcctgcggat 42152604  T

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Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 346 - 453
Target Start/End: Complemental strand, 4570663 - 4570556
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 445  Q
    |||||||||||||| ||||||||||| |||||||||||||||| | |||||| ||||||||||||| ||| ||| ||||||| |||| || | ||||| |    
T  4570663 caggggcggagccacccccagctagcatgggcactagcccaggctgagcttctactttctttgtagtaagcccagccattactagaaactttcgctttac 4570564  T
Q  446 ctgcggat 453  Q
    ||||||||    
T  4570563 ctgcggat 4570556  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 361 - 452
Target Start/End: Complemental strand, 304291 - 304200
Alignment:
Q  361 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcgga 452  Q
    ||||||||||| |||||||||||||| | |||||| |||||||||||||||||||  || ||||||| ||||| | | ||||||||||||||    
T  304291 ccccagctagcttgggcactagcccaagctcagctccaactttctttgtagcaagctcagccattactagaacttttagcttttcctgcgga 304200  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 344 - 453
Target Start/End: Original strand, 13203696 - 13203806
Alignment:
Q  344 atcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctt 442  Q
    |||||||| ||||||| |||| |||||||||||||    ||||||| |||||| ||||||||||||||||||| ||||||||||| ||||  | | ||||    
T  13203696 atcaggggtggagccaccccccagctagcctgggctagtgcccaggctcagctccaactttctttgtagcaagcccaaccattactagaatttttagctt 13203795  T
Q  443 ttcctgcggat 453  Q
    |||||||||||    
T  13203796 ttcctgcggat 13203806  T

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Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 381 - 453
Target Start/End: Original strand, 25562890 - 25562962
Alignment:
Q  381 agcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 453  Q
    |||||||| |||||| ||||||||||||||||||| ||||||||||| ||||| | | |||||||||||||||    
T  25562890 agcccaggctcagctccaactttctttgtagcaagcccaaccattactagaacttttagcttttcctgcggat 25562962  T

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Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 346 - 415
Target Start/End: Complemental strand, 33909525 - 33909456
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaag 415  Q
    |||||||||||||| || |||||| |||||||||||||||||  | |||| |||||||||||||||||||    
T  33909525 caggggcggagccaccctcagctaacctgggcactagcccagacttagctccaactttctttgtagcaag 33909456  T

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Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 346 - 453
Target Start/End: Complemental strand, 41115054 - 41114946
Alignment:
Q  346 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 444  Q
    ||||||||||||||||||| |||||||||||||    ||||||| || ||| |||||||||||||||||||  |||||||||| ||||  | | | ||||    
T  41115054 caggggcggagccatcccccagctagcctgggctagtgcccaggctcggctccaactttctttgtagcaagctcaaccattactagaatttttagttttt 41114955  T
Q  445 cctgcggat 453  Q
    |||||||||    
T  41114954 cctgcggat 41114946  T

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Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 378 - 453
Target Start/End: Complemental strand, 16221153 - 16221078
Alignment:
Q  378 actagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 453  Q
    ||||||||||| |||| ||| ||||||| |||| ||||  |||||||||| ||||| |||||||||||||||||||    
T  16221153 actagcccaggctcaggttctactttctgtgtaacaagcacaaccattactagaacttcttgcttttcctgcggat 16221078  T

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Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 376 - 453
Target Start/End: Original strand, 15429140 - 15429217
Alignment:
Q  376 gcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 453  Q
    |||||||| |||| |||||||| |||||||||||||||||||  | |||||| ||||||||| |||||| || |||||    
T  15429140 gcactagctcaggctcagcttctactttctttgtagcaagtctgatcattactagaacctctcgctttttcttcggat 15429217  T

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Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 453
Target Start/End: Original strand, 28816669 - 28816730
Alignment:
Q  392 agcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 453  Q
    |||||| |||| |||||||||||||||| ||||||  |||||||||||||||| ||||||||    
T  28816669 agcttctacttactttgtagcaagtccagccattattagaacctcttgctttttctgcggat 28816730  T

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Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 333 - 410
Target Start/End: Original strand, 41010394 - 41010471
Alignment:
Q  333 caatcgtcatgatcaggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgta 410  Q
    ||||| ||| |||| |||||||||||| |||||||||||||||||||||| | ||  |||||| ||||||| ||||||    
T  41010394 caatcatcaagatctggggcggagccaaccccagctagcctgggcactagtctagactcagctccaactttttttgta 41010471  T

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Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 450
Target Start/End: Complemental strand, 22572880 - 22572780
Alignment:
Q  350 ggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgc 449  Q
    |||||||||| |||| ||||||||||||    | ||||| |||||| ||||||||||||||||||| | ||||||||| ||||  | | |||||||||||    
T  22572880 ggcggagccacccccggctagcctgggctagtgtccaggctcagctccaactttctttgtagcaagcctaaccattactagaatatttagcttttcctgc 22572781  T
Q  450 g 450  Q
    |    
T  22572780 g 22572780  T

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Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 433
Target Start/End: Original strand, 2475769 - 2475841
Alignment:
Q  361 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 433  Q
    ||||||||||  |||||||||| ||||  |||||| ||||||||||||||| ||| ||| ||||||| |||||    
T  2475769 ccccagctagtttgggcactagtccagactcagctccaactttctttgtaggaagcccagccattactagaac 2475841  T

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Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 427
Target Start/End: Original strand, 27701998 - 27702062
Alignment:
Q  363 ccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattac 427  Q
    |||| ||||||||||||||||| ||| |||||| ||||||||| |||| ||| |||| |||||||    
T  27701998 ccagttagcctgggcactagcctaggctcagctccaactttctctgtaacaaatccagccattac 27702062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 1270536 - 1270578
Alignment:
Q  140 tttggagggaaggagaatggaagactttgagggatggaaaata 182  Q
    ||||||||| ||||||||| ||||||||||||||| |||||||    
T  1270536 tttggaggggaggagaatgaaagactttgagggatagaaaata 1270578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 395
Target Start/End: Original strand, 15651169 - 15651218
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagct 395  Q
    |||||||||||||| ||||||||||||| | |||||||||| | ||||||    
T  15651169 caggggcggagccacccccagctagcctcgacactagcccatgctcagct 15651218  T

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Target: chr7 (Bit Score: 64; Significance: 9e-28; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 346 - 433
Target Start/End: Complemental strand, 41759804 - 41759717
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 433  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||| ||||||| |||||    
T  41759804 caggggcggagccacccccagctagcctgggcactagcccaggctcagctccaactttctttgtagcaagcccagccattactagaac 41759717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 34 - 125
Target Start/End: Complemental strand, 3339321 - 3339230
Alignment:
Q  34 aaacaaaatttcggtctgatcatcaactcttaattgaggaattccaagaactccttgtgaaaacctcaagtcaagtaaacactcacttttag 125  Q
    ||||||||||||||||  ||| |||||| |||||||||||||| |||||||||||   |||||||||||| |||||||||||||||||||||    
T  3339321 aaacaaaatttcggtcccatcgtcaactgttaattgaggaatttcaagaactcctcccgaaaacctcaagccaagtaaacactcacttttag 3339230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 346 - 453
Target Start/End: Complemental strand, 5991602 - 5991494
Alignment:
Q  346 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 444  Q
    |||||||||||||| |||| |||||||||||||||||||||||| ||| || ||| ||||||||||||||| ||| ||||||| ||||| | | | ||||    
T  5991602 caggggcggagccaccccccagctagcctgggcactagcccaggctcaactccaattttctttgtagcaagcccagccattactagaacttttagttttt 5991503  T
Q  445 cctgcggat 453  Q
    |||||||||    
T  5991502 cctgcggat 5991494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 360 - 453
Target Start/End: Complemental strand, 815155 - 815062
Alignment:
Q  360 tccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 453  Q
    ||||||| ||||||||||||||||||||| |||||| |||||||||||||||||| || | ||||||| ||||| | | ||||||||| |||||    
T  815155 tccccagttagcctgggcactagcccaggctcagctccaactttctttgtagcaaatctagccattactagaacttttagcttttcctacggat 815062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 346 - 452
Target Start/End: Original strand, 30852275 - 30852380
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 445  Q
    ||||||| |||||| |||||||||||||||||||||||||||| |||||| ||| ||||||||||| |||  || ||||||| ||||| | |  ||||||    
T  30852275 caggggcagagcca-ccccagctagcctgggcactagcccaggctcagctccaattttctttgtagtaagctcagccattactagaacttttaacttttc 30852373  T
Q  446 ctgcgga 452  Q
    |||||||    
T  30852374 ctgcgga 30852380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 350 - 427
Target Start/End: Original strand, 19377319 - 19377395
Alignment:
Q  350 ggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattac 427  Q
    |||||||||| ||||||||||| |||||||||||||||| |||||| |||||||||||||| ||| |||| |||||||    
T  19377319 ggcggagcca-ccccagctagcttgggcactagcccaggctcagctccaactttctttgtaacaactccagccattac 19377395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 349 - 453
Target Start/End: Complemental strand, 22206868 - 22206763
Alignment:
Q  349 gggcggagccatc-cccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcct 447  Q
    ||||||||||| | ||||||||||||||||||||||||||| |||||| ||| ||||||||||||||| |||  |||||| | ||  | | |||||||||    
T  22206868 gggcggagccaccacccagctagcctgggcactagcccaggctcagctccaattttctttgtagcaagcccaggcattactataatttttagcttttcct 22206769  T
Q  448 gcggat 453  Q
    ||||||    
T  22206768 gcggat 22206763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 349 - 453
Target Start/End: Original strand, 22227871 - 22227976
Alignment:
Q  349 gggcggagccatc-cccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcct 447  Q
    ||||||||||| | ||||||||||||||||||||||||||| |||||| ||| ||||||||||||||| |||  |||||| | ||  | | |||||||||    
T  22227871 gggcggagccaccacccagctagcctgggcactagcccaggctcagctccaattttctttgtagcaagcccaggcattactataatttttagcttttcct 22227970  T
Q  448 gcggat 453  Q
    ||||||    
T  22227971 gcggat 22227976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 346 - 433
Target Start/End: Complemental strand, 28694236 - 28694148
Alignment:
Q  346 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 433  Q
    |||||||| |||||||||| ||||||||||| ||||| |||||| |||||| |||||||||||||||||||| |  ||||||| |||||    
T  28694236 caggggcgtagccatcccccagctagcctggacactaacccaggctcagctccaactttctttgtagcaagttccgccattactagaac 28694148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 346 - 453
Target Start/End: Complemental strand, 35300625 - 35300517
Alignment:
Q  346 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 444  Q
    |||||||||||||| |||| |||||||||||||    ||||||| |||||| ||||||||||||||||||| || |||||||| ||||  | | ||||||    
T  35300625 caggggcggagccaccccccagctagcctgggctagtgcccaggctcagctccaactttctttgtagcaagccctaccattactagaatgtttagctttt 35300526  T
Q  445 cctgcggat 453  Q
    |||||||||    
T  35300525 cctgcggat 35300517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 368 - 427
Target Start/End: Complemental strand, 21932940 - 21932881
Alignment:
Q  368 tagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattac 427  Q
    ||||||||||||||||||||| ||| || ||||||||||||||||||| |||||||||||    
T  21932940 tagcctgggcactagcccaggctcaactccaactttctttgtagcaagcccaaccattac 21932881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 396 - 453
Target Start/End: Original strand, 3012279 - 3012336
Alignment:
Q  396 tcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 453  Q
    |||||||||||||||||||| ||||||||||| ||||| | | |||||||||||||||    
T  3012279 tcaactttctttgtagcaagcccaaccattactagaacttttagcttttcctgcggat 3012336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 453
Target Start/End: Complemental strand, 41862503 - 41862396
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 445  Q
    ||||||||||||||  ||||||||| |||||||||||||||   |||||| | |||||||||| ||||| | || ||||||| || | |||||| ||||     
T  41862503 caggggcggagccaaacccagctagtctgggcactagcccatactcagctcctactttctttgcagcaaattcagccattactagtatctcttgtttttt 41862404  T
Q  446 ctgcggat 453  Q
    || |||||    
T  41862403 ctacggat 41862396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 346 - 423
Target Start/End: Complemental strand, 38129186 - 38129111
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaacca 423  Q
    |||||||||||||| ||||||||||| ||||||||| | |||| ||||||  ||||||| || |||||||||||||||    
T  38129186 caggggcggagcca-ccccagctagcatgggcactaactcaggctcagctcaaactttc-ttatagcaagtccaacca 38129111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 449
Target Start/End: Complemental strand, 25688375 - 25688271
Alignment:
Q  346 caggggcggagccatc-cccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 444  Q
    |||||||||||||| | ||||| ||| ||||| ||||||||||  |||||| ||| |||||||||||||||  || ||||||| | ||| | | ||||||    
T  25688375 caggggcggagccaccacccagttagtctgggtactagcccagactcagctccaattttctttgtagcaagctcagccattactaaaacttttagctttt 25688276  T
Q  445 cctgc 449  Q
    |||||    
T  25688275 cctgc 25688271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 32425327 - 32425271
Alignment:
Q  269 taagttatacaaaaactatttaactatattttatctttagctaaagaaatagttttt 325  Q
    |||||||| ||||| | ||||||||| ||||||||||||||||  ||||||||||||    
T  32425327 taagttattcaaaatcaatttaactacattttatctttagctacggaaatagttttt 32425271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 453
Target Start/End: Complemental strand, 7873349 - 7873297
Alignment:
Q  401 tttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 453  Q
    ||||||||||||||| ||||||||||| ||||| | | |||||| ||||||||    
T  7873349 tttctttgtagcaagcccaaccattactagaacttttagctttttctgcggat 7873297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 9e-28; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 346 - 453
Target Start/End: Complemental strand, 6802284 - 6802177
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 445  Q
    ||||||| |||||| |||||||||||||||||||||||||||| ||| |||| |||||||||||||||||  || ||||||| ||||| ||| |||||||    
T  6802284 caggggcagagccacccccagctagcctgggcactagcccaggctcaacttctactttctttgtagcaagctcagccattactagaacttctcgcttttc 6802185  T
Q  446 ctgcggat 453  Q
    ||||||||    
T  6802184 ctgcggat 6802177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 346 - 453
Target Start/End: Original strand, 11647071 - 11647178
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 445  Q
    |||||||||||||| |||||||||||||| |||||| || ||  ||| |||| ||||||||||||||||| | | ||||||||||||||||| |||||||    
T  11647071 caggggcggagccacccccagctagcctgagcactatccgagactcaacttctactttctttgtagcaagccaagccattacaagaacctctcgcttttc 11647170  T
Q  446 ctgcggat 453  Q
    ||||||||    
T  11647171 ctgcggat 11647178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 345 - 458
Target Start/End: Original strand, 4773936 - 4774050
Alignment:
Q  345 tcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttt 443  Q
    ||||||||||||||| |||| |||||||||||||||||||||||  ||| || ||| ||| ||||||||||| ||| ||||||| ||||| | | |||||    
T  4773936 tcaggggcggagccaccccccagctagcctgggcactagcccagactcaactccaattttttttgtagcaagcccagccattactagaacttttagcttt 4774035  T
Q  444 tcctgcggatattta 458  Q
    |||||||||||||||    
T  4774036 tcctgcggatattta 4774050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 347 - 453
Target Start/End: Complemental strand, 44239042 - 44238936
Alignment:
Q  347 aggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcc 446  Q
    ||||||||||||| |||||||||| ||||||||||||||||| |||||| ||||||||||||||| ||| ||| ||||||| ||||  | | |||||||     
T  44239042 aggggcggagccacccccagctagtctgggcactagcccaggctcagctccaactttctttgtagaaagcccagccattactagaaattttagcttttct 44238943  T
Q  447 tgcggat 453  Q
    |||||||    
T  44238942 tgcggat 44238936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 346 - 453
Target Start/End: Original strand, 14727248 - 14727356
Alignment:
Q  346 caggggcggagccatcccca-gctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 444  Q
    |||||||||||||| ||||| ||||||||||||    ||||||| |||||| ||||||||||||||||||||||||||||||| ||||  | | ||||||    
T  14727248 caggggcggagccacccccaagctagcctgggctagtgcccaggctcagctccaactttctttgtagcaagtccaaccattactagaatttttagctttt 14727347  T
Q  445 cctgcggat 453  Q
    |||||||||    
T  14727348 cctgcggat 14727356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 49898345 - 49898449
Alignment:
Q  346 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 444  Q
    |||||||||||||| |||| |||||||||||||||||||||||| |||||| |||||||||||||| ||||| || ||||||| ||||  | | ||||||    
T  49898345 caggggcggagccaccccccagctagcctgggcactagcccaggctcagctccaactttctttgtaacaagttcagccattactagaagttttagctttt 49898444  T
Q  445 cctgc 449  Q
    |||||    
T  49898445 cctgc 49898449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 350 - 453
Target Start/End: Complemental strand, 33169462 - 33169359
Alignment:
Q  350 ggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgc 449  Q
    |||||||||| ||| ||||||||| ||||||| |||| | |||||||| ||||| |||||| |||| ||||||||||| | ||||||| |||||||||||    
T  33169462 ggcggagccacccctagctagcctaggcactaacccaagctcagcttctactttttttgtaacaagcccaaccattactataacctctcgcttttcctgc 33169363  T
Q  450 ggat 453  Q
    ||||    
T  33169362 ggat 33169359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 345 - 453
Target Start/End: Original strand, 25007393 - 25007502
Alignment:
Q  345 tcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttt 443  Q
    ||||||||||||||| |||| |||||||||||||    ||||||| |||||| ||||||||||||||||||| || |||||||| ||||  | | |||||    
T  25007393 tcaggggcggagccaccccccagctagcctgggctaatgcccaggctcagctccaactttctttgtagcaagccctaccattactagaatttttagcttt 25007492  T
Q  444 tcctgcggat 453  Q
    ||||||||||    
T  25007493 tcctgcggat 25007502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 353 - 421
Target Start/End: Original strand, 41751909 - 41751977
Alignment:
Q  353 ggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaac 421  Q
    ||||||| |||||||||||||||||||||||||||   || |||| |||||||||||||||||||||||    
T  41751909 ggagccaaccccagctagcctgggcactagcccagacgcaacttctactttctttgtagcaagtccaac 41751977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 453
Target Start/End: Original strand, 24645983 - 24646091
Alignment:
Q  345 tcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttt 443  Q
    ||||||||||||||| |||| ||||||| ||| ||||||| |||| ||| || |||||||||||||||||| | |||||||||| ||||| | | |||||    
T  24645983 tcaggggcggagccaccccccagctagcatggacactagctcaggctcaactccaactttctttgtagcaact-caaccattactagaacttttagcttt 24646081  T
Q  444 tcctgcggat 453  Q
    ||||| ||||    
T  24646082 tcctgtggat 24646091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 390 - 450
Target Start/End: Complemental strand, 16640426 - 16640366
Alignment:
Q  390 tcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcg 450  Q
    |||| ||| ||||||||||||||||| |||||||||||||||| |||| ||||||||||||    
T  16640426 tcagtttctactttctttgtagcaagaccaaccattacaagaatctctcgcttttcctgcg 16640366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 346 - 453
Target Start/End: Original strand, 27460626 - 27460734
Alignment:
Q  346 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 444  Q
    |||||||||||||| |||| ||||||| |||||    ||||||| |||||| ||||||||||||||||||| ||||||||||| ||||  | | ||||||    
T  27460626 caggggcggagccaccccctagctagcatgggctagtgcccaggctcagctccaactttctttgtagcaagcccaaccattactagaatttttagctttt 27460725  T
Q  445 cctgcggat 453  Q
    | |||||||    
T  27460726 cttgcggat 27460734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 346 - 453
Target Start/End: Complemental strand, 27584198 - 27584090
Alignment:
Q  346 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 444  Q
    |||||||||||||| |||| |||||||||||||    ||||||| || ||| ||||||||||||||||||| | ||||||||| ||||  | | ||||||    
T  27584198 caggggcggagccaccccccagctagcctgggctagcgcccaggctcggctccaactttctttgtagcaagccaaaccattactagaatttttagctttt 27584099  T
Q  445 cctgcggat 453  Q
    |||||||||    
T  27584098 cctgcggat 27584090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 375 - 458
Target Start/End: Complemental strand, 4642225 - 4642142
Alignment:
Q  375 ggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggatattta 458  Q
    |||||||| ||||| |||||| | |||||||||||||||||| || ||||||| ||||| | | ||||||||||||||| ||||    
T  4642225 ggcactagtccaggctcagctccgactttctttgtagcaagttcagccattactagaacttttagcttttcctgcggattttta 4642142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 8239210 - 8239313
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 445  Q
    |||||||||||||| |||||||||||||||||    ||||||| |||||| ||||||||||||||| ||  || |||||||| ||||  | | |||||||    
T  8239210 caggggcggagccacccccagctagcctgggctagtgcccaggctcagctccaactttctttgtagtaatccctaccattactagaatttttagcttttc 8239309  T
Q  446 ctgc 449  Q
    ||||    
T  8239310 ctgc 8239313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 361 - 415
Target Start/End: Original strand, 4163388 - 4163442
Alignment:
Q  361 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaag 415  Q
    |||||||||||||||||||||||||||| | |||| ||||||||||| |||||||    
T  4163388 ccccagctagcctgggcactagcccaggtttagctccaactttctttatagcaag 4163442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 453
Target Start/End: Complemental strand, 25011682 - 25011613
Alignment:
Q  384 ccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 453  Q
    ||||| |||||| ||||||||||||||||||| ||||||||||| ||||  | | |||||||||||||||    
T  25011682 ccaggctcagctccaactttctttgtagcaagcccaaccattactagaatttttagcttttcctgcggat 25011613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 345 - 453
Target Start/End: Complemental strand, 37154176 - 37154067
Alignment:
Q  345 tcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttt 443  Q
    ||||||||||||||| |||| |||||||||||||    ||||||| |||||| ||||||||||||||| |||  | |||||||| ||||  | | |||||    
T  37154176 tcaggggcggagccaccccccagctagcctgggctagtgcccaggctcagctccaactttctttgtaggaagctctaccattactagaatttttagcttt 37154077  T
Q  444 tcctgcggat 453  Q
    ||||||||||    
T  37154076 tcctgcggat 37154067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 349 - 453
Target Start/End: Complemental strand, 33469121 - 33469018
Alignment:
Q  349 gggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctg 448  Q
    ||||||||||| |||||||||||||||||    ||| ||| |||||| ||||||||||| |||||| | |||||||||| ||||  | | ||||||||||    
T  33469121 gggcggagcca-ccccagctagcctgggctagtgcctaggctcagctccaactttctttatagcaaattcaaccattactagaaattttagcttttcctg 33469023  T
Q  449 cggat 453  Q
    |||||    
T  33469022 cggat 33469018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 453
Target Start/End: Original strand, 44305342 - 44305450
Alignment:
Q  346 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 444  Q
    |||||||||||||| |||| |||||||||||||    ||||||| |||||| ||||||||||||||| ||| || || ||||| ||||  | | ||||||    
T  44305342 caggggcggagccaccccccagctagcctgggctagtgcccaggctcagctccaactttctttgtaggaagccctacaattactagaatttttagctttt 44305441  T
Q  445 cctgcggat 453  Q
    |||||||||    
T  44305442 cctgcggat 44305450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 382 - 453
Target Start/End: Original strand, 9527012 - 9527083
Alignment:
Q  382 gcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 453  Q
    |||||||  ||||| ||||||||||||||||||| ||| ||||||| ||||| | | |||||||||||||||    
T  9527012 gcccaggcccagctccaactttctttgtagcaagcccagccattactagaacttttagcttttcctgcggat 9527083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 437
Target Start/End: Original strand, 37574864 - 37574955
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctct 437  Q
    |||||||||||||| ||||| |||| |||| |||||| ||||  ||| |||| ||||||||| ||||||||  | ||||||| |||||||||    
T  37574864 caggggcggagccacccccacctagtctggacactagtccagactcaacttctactttctttatagcaagtatagccattactagaacctct 37574955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 451
Target Start/End: Original strand, 6331605 - 6331710
Alignment:
Q  345 tcaggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 444  Q
    ||||||||||||||| |||||||||||||||||    ||||||| || ||| ||||||||| ||||||||   |||||||||| ||||  | | ||||||    
T  6331605 tcaggggcggagcca-ccccagctagcctgggctagtgcccaggctcggctccaactttctatgtagcaaactcaaccattactagaaattttagctttt 6331703  T
Q  445 cctgcgg 451  Q
    |||||||    
T  6331704 cctgcgg 6331710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 274 - 319
Target Start/End: Complemental strand, 13809994 - 13809949
Alignment:
Q  274 tatacaaaaactatttaactatattttatctttagctaaagaaata 319  Q
    ||||||||||| |||||||| |||||||||||| ||||||||||||    
T  13809994 tatacaaaaacaatttaactttattttatcttttgctaaagaaata 13809949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 410
Target Start/End: Original strand, 24745334 - 24745398
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgta 410  Q
    |||||||||||||| |||||  ||| ||||| ||||||||||  |||||| ||||||||||||||    
T  24745334 caggggcggagccacccccaattagtctgggtactagcccagtctcagctccaactttctttgta 24745398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 323
Target Start/End: Complemental strand, 7028289 - 7028239
Alignment:
Q  273 ttatacaaaaactatttaactatattttatctttagctaaagaaatagttt 323  Q
    |||||||||||| | |||||| |||||||||||| |||| |||||||||||    
T  7028289 ttatacaaaaacaacttaactttattttatcttttgctatagaaatagttt 7028239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 323
Target Start/End: Original strand, 24915125 - 24915174
Alignment:
Q  274 tatacaaaaactatttaactatattttatctttagctaaagaaatagttt 323  Q
    ||||||||||| |||||||| |||||||||||  |||| |||||||||||    
T  24915125 tatacaaaaacaatttaactttattttatcttctgctatagaaatagttt 24915174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 344 - 453
Target Start/End: Complemental strand, 21138245 - 21138135
Alignment:
Q  344 atcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctt 442  Q
    |||||||||||||||| |||| ||||||| | |||| ||| ||||| |||||||| ||||||||||||||||| | ||||||||| ||||||||||||||    
T  21138245 atcaggggcggagccaccccccagctagcataggcattagtccaggctcagcttctactttctttgtagcaagcctaaccattactagaacctcttgctt 21138146  T
Q  443 ttcctgcggat 453  Q
    |||||||||||    
T  21138145 ttcctgcggat 21138135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 347 - 453
Target Start/End: Complemental strand, 34283081 - 34282974
Alignment:
Q  347 aggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 445  Q
    ||||||||||||| |||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||  |||||| ||||| | | |||||||    
T  34283081 aggggcggagccaccccccagctagcctgggcactagcccaggctcagctccaactttctttgtagcaagtccagtcattactagaacttttagcttttc 34282982  T
Q  446 ctgcggat 453  Q
     |||||||    
T  34282981 ttgcggat 34282974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 361 - 451
Target Start/End: Original strand, 12478081 - 12478171
Alignment:
Q  361 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcgg 451  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| | ||| | |||||||||  ||||||||||||    
T  12478081 ccccagctagcctgggcactagcccaggatcaacttctactttctttgtagcaagtccatctattgctagaacctctctcttttcctgcgg 12478171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 346 - 458
Target Start/End: Original strand, 38214689 - 38214802
Alignment:
Q  346 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 444  Q
    |||||||||||||| |||| ||||||||||||||||||||| || |||||| ||| ||||||||||||||||||| ||| ||| ||||| | | ||||||    
T  38214689 caggggcggagccaccccccagctagcctgggcactagcccgggctcagctccaattttctttgtagcaagtccagccaatactagaacttttagctttt 38214788  T
Q  445 cctgcggatattta 458  Q
    ||||||||| ||||    
T  38214789 cctgcggattttta 38214802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 346 - 458
Target Start/End: Complemental strand, 27322034 - 27321922
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 445  Q
    |||||||||||||| |||||||||||||||||||| ||||||| |||||| ||| ||||||||||||||| ||| ||||||| | ||| | | | |||||    
T  27322034 caggggcggagccacccccagctagcctgggcacttgcccaggctcagctccaattttctttgtagcaagcccagccattactaaaacttttagtttttc 27321935  T
Q  446 ctgcggatattta 458  Q
    |||||||| ||||    
T  27321934 ctgcggattttta 27321922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 361 - 453
Target Start/End: Original strand, 8968276 - 8968368
Alignment:
Q  361 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 453  Q
    ||||||||||||| |||||||||||||  |||||||| |||| |||||||||||||||| ||||||| ||||||| |  ||||| ||||||||    
T  8968276 ccccagctagcctaggcactagcccagactcagcttctacttcctttgtagcaagtccagccattactagaacctatcactttttctgcggat 8968368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 344 - 453
Target Start/End: Original strand, 24964961 - 24965071
Alignment:
Q  344 atcaggggcggagccatc-cccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctt 442  Q
    |||| ||||||||||| | ||||||||||||||||    ||||||| || ||| ||||||||||||||||||| ||||||||||| ||||  | | ||||    
T  24964961 atcatgggcggagccaccacccagctagcctgggctagtgcccaggctcggctccaactttctttgtagcaagcccaaccattactagaatttttagctt 24965060  T
Q  443 ttcctgcggat 453  Q
    |||||||||||    
T  24965061 ttcctgcggat 24965071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 361 - 414
Target Start/End: Complemental strand, 39431843 - 39431790
Alignment:
Q  361 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaa 414  Q
    ||||||||||||||||||||||||| || |||||| ||||||||||||||||||    
T  39431843 ccccagctagcctgggcactagcccgggctcagctccaactttctttgtagcaa 39431790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 452
Target Start/End: Original strand, 28927989 - 28928096
Alignment:
Q  345 tcaggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 444  Q
    ||||||||||||||| |||||||||  ||||||    ||||||| || ||| ||||||||||||||||||| | ||||||||| ||||  | | ||||||    
T  28927989 tcaggggcggagccacccccagctattctgggctagtgcccaggctcggctccaactttctttgtagcaagcctaaccattactagaatttttagctttt 28928088  T
Q  445 cctgcgga 452  Q
    ||||||||    
T  28928089 cctgcgga 28928096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 426
Target Start/End: Complemental strand, 3384211 - 3384135
Alignment:
Q  350 ggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccatta 426  Q
    |||||||||| | ||||||||||||||     ||||||| |||||| |||||||||||||||||||||| |||||||    
T  3384211 ggcggagccacctccagctagcctgggttagtgcccaggctcagctccaactttctttgtagcaagtcctaccatta 3384135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 34336293 - 34336235
Alignment:
Q  124 aggctttgtttg-gagatttggagggaaggagaatggaagactttgagggatggaaaata 182  Q
    |||||||||||| ||| ||||||||| ||||||||||||||||||||||| |||||||||    
T  34336293 aggctttgtttgtgag-tttggaggggaggagaatggaagactttgaggggtggaaaata 34336235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 197 - 260
Target Start/End: Original strand, 36336659 - 36336722
Alignment:
Q  197 aaacttaggtagtaaatatctccctcaaatttaaattttatgtgcaaatattcccttcaaattt 260  Q
    ||||||| |||| ||||| | |||||||||| ||| ||||||||||||||| ||||||||||||    
T  36336659 aaacttatgtagcaaataccaccctcaaattcaaaatttatgtgcaaatatccccttcaaattt 36336722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 419
Target Start/End: Original strand, 376381 - 376439
Alignment:
Q  361 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtcca 419  Q
    ||||||||||||||||||||||||| || |||||| | ||||||||| || ||||||||    
T  376381 ccccagctagcctgggcactagcccgggctcagctgctactttctttataccaagtcca 376439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 427
Target Start/End: Complemental strand, 36406686 - 36406604
Alignment:
Q  346 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattac 427  Q
    |||||||||||||| |||| |||||||||||||    ||||||| || ||| ||||||||||||||||||| |||| ||||||    
T  36406686 caggggcggagccaccccccagctagcctgggctagtgcccaggctcggctccaactttctttgtagcaagcccaaacattac 36406604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 380
Target Start/End: Original strand, 13243025 - 13243057
Alignment:
Q  348 ggggcggagccatccccagctagcctgggcact 380  Q
    |||||||||||| ||||||||||||||||||||    
T  13243025 ggggcggagccacccccagctagcctgggcact 13243057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 346 - 453
Target Start/End: Original strand, 50383819 - 50383927
Alignment:
Q  346 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 444  Q
    |||||||||||||| |||| |||||||||||||||| ||||||| |||||| ||||||||||||||||||| ||| ||||||| ||||| | | ||||||    
T  50383819 caggggcggagccaccccccagctagcctgggcactggcccaggctcagctccaactttctttgtagcaagcccagccattactagaacttttagctttt 50383918  T
Q  445 cctgcggat 453  Q
    |||||||||    
T  50383919 cctgcggat 50383927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 346 - 449
Target Start/End: Complemental strand, 15034658 - 15034554
Alignment:
Q  346 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 444  Q
    |||||||||||||| |||| | |||||||||||||||||||| | ||||||||||||||||||||| |||| ||||||||||| ||||| | | ||||||    
T  15034658 caggggcggagccaccccccaactagcctgggcactagcccaagctcagcttcaactttctttgtaacaagcccaaccattactagaacttttcgctttt 15034559  T
Q  445 cctgc 449  Q
    |||||    
T  15034558 cctgc 15034554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 32828146 - 32828250
Alignment:
Q  346 caggggcggagccat-ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 444  Q
    ||||||||||||||  |||||||||||||||||||||||||||| |||||| ||| ||||||||||| ||  ||||||||||| ||||| | | ||||||    
T  32828146 caggggcggagccaaaccccagctagcctgggcactagcccaggctcagctccaattttctttgtagtaatcccaaccattactagaacttttagctttt 32828245  T
Q  445 cctgc 449  Q
    |||||    
T  32828246 cctgc 32828250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 347 - 449
Target Start/End: Original strand, 1585642 - 1585744
Alignment:
Q  347 aggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcc 446  Q
    ||||||||||||| |||||||||||||||||    ||||||| |||||||||||||||||||||||||| || |||||||| ||||  | | ||||||||    
T  1585642 aggggcggagccacccccagctagcctgggctagtgcccaggctcagcttcaactttctttgtagcaagccctaccattactagaatttttagcttttcc 1585741  T
Q  447 tgc 449  Q
    |||    
T  1585742 tgc 1585744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 346 - 432
Target Start/End: Original strand, 2576091 - 2576177
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 432  Q
    |||||||||||||| |||||||||| ||||||    ||||||| |||||| ||||||||||||||||||| ||||||||||||||||    
T  2576091 caggggcggagccaaccccagctagtctgggctagtgcccaggctcagctccaactttctttgtagcaagcccaaccattacaagaa 2576177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 453
Target Start/End: Original strand, 6017046 - 6017155
Alignment:
Q  345 tcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttt 443  Q
    ||||||||||||||| |||| ||||||| |||||||||||||||| ||| |||| ||||||||||||||||| || || ||||| ||||| | | |||||    
T  6017046 tcaggggcggagccaccccctagctagcatgggcactagcccaggctcaacttctactttctttgtagcaagcccgactattactagaacttgtcgcttt 6017145  T
Q  444 tcctgcggat 453  Q
    | ||||||||    
T  6017146 ttctgcggat 6017155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 453
Target Start/End: Original strand, 40969154 - 40969263
Alignment:
Q  345 tcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttt 443  Q
    ||||||||||||| |||||| |||||||||||||    || |||| |||||||||||||||||||||||||||||||||||||  ||||  | | |||||    
T  40969154 tcaggggcggagctatcccccagctagcctgggctagtgctcaggctcagcttcaactttctttgtagcaagtccaaccattatgagaatttttagcttt 40969253  T
Q  444 tcctgcggat 453  Q
    ||||||||||    
T  40969254 tcctgcggat 40969263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 347 - 453
Target Start/End: Complemental strand, 41972622 - 41972514
Alignment:
Q  347 aggggcggagccatcccc--agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 444  Q
    ||||||||||||| ||||  |||||| ||||||||||||  ||| |||||| ||||||||||||||||||| | ||||||||| ||||| | | ||||||    
T  41972622 aggggcggagccacccccccagctaggctgggcactagcttaggctcagctccaactttctttgtagcaagccgaaccattactagaacttttagctttt 41972523  T
Q  445 cctgcggat 453  Q
    |||||||||    
T  41972522 cctgcggat 41972514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 346 - 433
Target Start/End: Original strand, 25237495 - 25237583
Alignment:
Q  346 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 433  Q
    |||||||||||||| |||| |||||||||| ||||||||||||| |||||| ||||||||||||||| |||||||  |||||| |||||    
T  25237495 caggggcggagccaccccccagctagcctgagcactagcccaggctcagctccaactttctttgtagtaagtccagtcattactagaac 25237583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 346 - 433
Target Start/End: Original strand, 9003488 - 9003575
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 433  Q
    |||||||| ||||| ||||||||||||| |||||||| ||||| |||||| ||| ||||||||||||||| |||  ||||||||||||    
T  9003488 caggggcgtagccacccccagctagcctaggcactagtccaggctcagctccaattttctttgtagcaagcccagtcattacaagaac 9003575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 346 - 453
Target Start/End: Original strand, 31364067 - 31364174
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 445  Q
    |||||||||||||| |||||||||||||||||    ||||||| || ||| |||||||||||||||||| |||||||||||| ||||  | | | |||||    
T  31364067 caggggcggagccacccccagctagcctgggctagtgcccaggctcggctccaactttctttgtagcaaatccaaccattactagaaattttagtttttc 31364166  T
Q  446 ctgcggat 453  Q
    ||||||||    
T  31364167 ctgcggat 31364174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 346 - 453
Target Start/End: Original strand, 32005846 - 32005953
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 445  Q
    |||||||||||||| |||||||||||||||||    ||||||| |||||| ||||||||||||||||||| || |||||||  ||||  | | |||||||    
T  32005846 caggggcggagccacccccagctagcctgggctagtgcccaggctcagctccaactttctttgtagcaagccctaccattattagaatttttagcttttc 32005945  T
Q  446 ctgcggat 453  Q
    ||||||||    
T  32005946 ctgcggat 32005953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 344 - 407
Target Start/End: Original strand, 52373668 - 52373731
Alignment:
Q  344 atcaggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttcttt 407  Q
    |||||||||||||||| |||||||||| ||||||||||||||||| |||||| |||||||||||    
T  52373668 atcaggggcggagccacccccagctagtctgggcactagcccaggctcagctccaactttcttt 52373731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 344 - 433
Target Start/End: Original strand, 9809723 - 9809812
Alignment:
Q  344 atcaggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 433  Q
    ||||| |||||||||| ||||| || ||||| |||||| |||||| | ||||  |||||||||||||||||||||| |||||||||||||    
T  9809723 atcagaggcggagccacccccatcttgcctgagcactaacccaggcttagctcaaactttctttgtagcaagtccagccattacaagaac 9809812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 344 - 453
Target Start/End: Complemental strand, 31929229 - 31929120
Alignment:
Q  344 atcaggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttt 443  Q
    |||| ||||||| ||| ||||||||||||||||| |||||| ||  | |||||  ||||||||||||||||| |||| |||||| |||| | || |||||    
T  31929229 atcaagggcggaaccacccccagctagcctgggcgctagccaagacttagcttttactttctttgtagcaagcccaatcattactagaatccctcgcttt 31929130  T
Q  444 tcctgcggat 453  Q
    ||||||||||    
T  31929129 tcctgcggat 31929120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 347 - 432
Target Start/End: Original strand, 49744972 - 49745057
Alignment:
Q  347 aggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaa 432  Q
    ||||||||||||| |||||||||| ||||||||||| ||||| |||||| ||||||||||| || |||||| | ||||||| ||||    
T  49744972 aggggcggagccaaccccagctagtctgggcactagtccaggctcagctccaactttctttataacaagtctagccattactagaa 49745057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 346 - 425
Target Start/End: Original strand, 8901735 - 8901814
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccatt 425  Q
    |||||||||||||| | |||||| | ||||||||||||||||| |||||| ||||||||||||||| ||| ||| |||||    
T  8901735 caggggcggagccaccgccagcttgtctgggcactagcccaggctcagctccaactttctttgtagaaagcccagccatt 8901814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 346 - 419
Target Start/End: Original strand, 36947447 - 36947520
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtcca 419  Q
    |||||||||||||| ||||||||||| | ||||||||| || | |||||| | |||||||||||||||||||||    
T  36947447 caggggcggagccaaccccagctagcttaggcactagctcaagctcagctcctactttctttgtagcaagtcca 36947520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 361 - 453
Target Start/End: Original strand, 4552132 - 4552224
Alignment:
Q  361 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 453  Q
    |||||||||||||||||    ||||||| |||||| ||||||||||||||||||| || |||||||| ||||  | | |||||||||||||||    
T  4552132 ccccagctagcctgggctagtgcccaggctcagctccaactttctttgtagcaagccctaccattactagaatttttagcttttcctgcggat 4552224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 433
Target Start/End: Original strand, 9694019 - 9694106
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaac 433  Q
    ||||||||||| || | |||||||||||| ||||||||||||| |||||| ||| ||||||||||| |||  || ||||||| |||||    
T  9694019 caggggcggagtcacctccagctagcctgtgcactagcccaggctcagctccaattttctttgtagtaagctcagccattactagaac 9694106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 346 - 453
Target Start/End: Original strand, 10715585 - 10715694
Alignment:
Q  346 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgta-gcaagtccaaccattacaagaacctcttgcttt 443  Q
    |||||||||||||| |||| |||||||||||||    ||||||| || ||| |||||||||||||| ||||| ||||||||||| ||||  | | |||||    
T  10715585 caggggcggagccaccccccagctagcctgggctagtgcccaggctcggctccaactttctttgtaagcaagcccaaccattactagaatttttagcttt 10715684  T
Q  444 tcctgcggat 453  Q
    ||||||||||    
T  10715685 tcctgcggat 10715694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 346 - 453
Target Start/End: Original strand, 10929355 - 10929464
Alignment:
Q  346 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgta-gcaagtccaaccattacaagaacctcttgcttt 443  Q
    |||||||||||||| |||| |||||||||||||    ||||||| || ||| |||||||||||||| ||||| ||||||||||| ||||  | | |||||    
T  10929355 caggggcggagccaccccccagctagcctgggctagtgcccaggctcggctccaactttctttgtaagcaagcccaaccattactagaatttttagcttt 10929454  T
Q  444 tcctgcggat 453  Q
    ||||||||||    
T  10929455 tcctgcggat 10929464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 453
Target Start/End: Complemental strand, 2017622 - 2017514
Alignment:
Q  346 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 444  Q
    |||||||||||||| |||| |||||||||||||    ||||||| | |||| |||||||||||||||||||  | |||||||| ||||  | | ||||||    
T  2017622 caggggcggagccaccccccagctagcctgggctagtgcccaggcttagctccaactttctttgtagcaagctctaccattactagaatttttagctttt 2017523  T
Q  445 cctgcggat 453  Q
    |||||||||    
T  2017522 cctgcggat 2017514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 453
Target Start/End: Complemental strand, 11827195 - 11827103
Alignment:
Q  361 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 453  Q
    |||||| |||| |||| ||||||||||| |||||| ||| ||||||||||| ||||| | ||||||| ||||| | | |||||| ||||||||    
T  11827195 ccccagttagcatgggtactagcccaggctcagctccaattttctttgtagtaagtctagccattactagaacttttagctttttctgcggat 11827103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 453
Target Start/End: Original strand, 4728475 - 4728585
Alignment:
Q  344 atcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctt 442  Q
    |||||||||||||||| |||| ||||||| |||||    ||||||  || ||| ||||||||||||||||||| | ||||||||| ||||  | | ||||    
T  4728475 atcaggggcggagccaccccccagctagcttgggctagtgcccagactcggctccaactttctttgtagcaagccaaaccattactagaatttttagctt 4728574  T
Q  443 ttcctgcggat 453  Q
    |||||||||||    
T  4728575 ttcctgcggat 4728585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 453
Target Start/End: Original strand, 46645559 - 46645630
Alignment:
Q  382 gcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 453  Q
    ||||||| |||||| |||||| |||||||||||| ||||||||||| ||||  | | |||||| ||||||||    
T  46645559 gcccaggctcagctccaacttcctttgtagcaagcccaaccattactagaatttttagctttttctgcggat 46645630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 453
Target Start/End: Original strand, 14044279 - 14044384
Alignment:
Q  349 gggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcct 447  Q
    ||||||||||| |||| ||||||  ||||||||||| |||  |||||| ||| ||||||||||||||| | | ||||||| | ||  | | |||||||||    
T  14044279 gggcggagccaccccccagctagtttgggcactagctcagtctcagctccaattttctttgtagcaagccaagccattacgaaaatttttagcttttcct 14044378  T
Q  448 gcggat 453  Q
    ||||||    
T  14044379 gcggat 14044384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 320
Target Start/End: Complemental strand, 3155597 - 3155553
Alignment:
Q  276 tacaaaaactatttaactatattttatctttagctaaagaaatag 320  Q
    ||||||||| |||||||| |||||||||||| |||| ||||||||    
T  3155597 tacaaaaacaatttaactttattttatcttttgctatagaaatag 3155553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 346 - 427
Target Start/End: Complemental strand, 21183 - 21101
Alignment:
Q  346 caggggcggagcca-tccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattac 427  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||  |||| ||| |||||||    
T  21183 caggggcggagccaatccccagctagcctgggcactagcccaggctcagcttcaactttctttgttacaagcccagccattac 21101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 345 - 453
Target Start/End: Complemental strand, 41218569 - 41218460
Alignment:
Q  345 tcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttt 443  Q
    ||||||||||||||| |||| |||||||||| ||||||||||||| |||||| | |||||| |||||||||| ||| ||||||| ||||| | | |||||    
T  41218569 tcaggggcggagccaccccccagctagcctgagcactagcccaggctcagctccgactttccttgtagcaagcccagccattactagaacttttagcttt 41218470  T
Q  444 tcctgcggat 453  Q
    ||||||||||    
T  41218469 tcctgcggat 41218460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 346 - 458
Target Start/End: Original strand, 9600287 - 9600399
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 445  Q
    |||||||||||||| |||||||||||||||||||||||||| | |||||| | | ||||||||||| ||  ||| ||||||| ||||| | | |||||||    
T  9600287 caggggcggagccacccccagctagcctgggcactagcccaagctcagctcctattttctttgtagtaatcccagccattactagaacttttggcttttc 9600386  T
Q  446 ctgcggatattta 458  Q
    |||||||| ||||    
T  9600387 ctgcggattttta 9600399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 346 - 453
Target Start/End: Original strand, 37516567 - 37516674
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 445  Q
    |||||||||||||| |||||||||||||||||    ||||||| || | | ||||||||||||||||||||||||||||||| ||||  | | |||||||    
T  37516567 caggggcggagccacccccagctagcctgggctagtgcccaggctcggttccaactttctttgtagcaagtccaaccattactagaatttttagcttttc 37516666  T
Q  446 ctgcggat 453  Q
    ||||||||    
T  37516667 ctgcggat 37516674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 346 - 453
Target Start/End: Original strand, 53651835 - 53651942
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 445  Q
    |||||||||||||| |||||||||||||||||    ||||||| |||||| ||||||||||||||||||| || |||||||| ||||  | | |||||||    
T  53651835 caggggcggagccacccccagctagcctgggctagtgcccaggctcagctccaactttctttgtagcaagccctaccattactagaatttttagcttttc 53651934  T
Q  446 ctgcggat 453  Q
    ||||||||    
T  53651935 ctgcggat 53651942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 349 - 450
Target Start/End: Complemental strand, 33179306 - 33179204
Alignment:
Q  349 gggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcct 447  Q
    |||||||||||||||| | |||||||||||||||||  ||| |||||| ||||||| ||||||||||||||| ||||||| ||||| | | |||||||||    
T  33179306 gggcggagccatcccccaactagcctgggcactagcttaggctcagctccaactttttttgtagcaagtccagccattactagaacttttagcttttcct 33179207  T
Q  448 gcg 450  Q
    |||    
T  33179206 gcg 33179204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 344 - 453
Target Start/End: Complemental strand, 41200077 - 41199967
Alignment:
Q  344 atcaggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctt 442  Q
    |||||||||||||||| |||| || ||||||| ||||||||||||| |||||||| ||||| ||||||| ||| ||| | ||||| |||||||||  |||    
T  41200077 atcaggggcggagccaccccccagttagcctgagcactagcccaggctcagcttctactttttttgtagtaagcccagcaattactagaacctctgcctt 41199978  T
Q  443 ttcctgcggat 453  Q
    |||||||||||    
T  41199977 ttcctgcggat 41199967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 346 - 458
Target Start/End: Original strand, 53987800 - 53987913
Alignment:
Q  346 caggggcggagccatccc-cagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 444  Q
    |||||||||||||| ||| |||||||| |||||||||| ||||| |||||||||| |||||||||||  ||  |||||||||| ||||| | | ||||||    
T  53987800 caggggcggagccacccctcagctagcttgggcactagtccaggctcagcttcaattttctttgtagtcagctcaaccattactagaacttttagctttt 53987899  T
Q  445 cctgcggatattta 458  Q
    ||||||||| ||||    
T  53987900 cctgcggattttta 53987913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 346 - 453
Target Start/End: Original strand, 26278289 - 26278395
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 445  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||| ||| |||||||| |||||| | | ||||||| ||||  | | |||||||    
T  26278289 caggggcggagcca-ccccagctagcctgggcactagcccaggctcagctccaattttctttggagcaagcctagccattactagaatttttagcttttc 26278387  T
Q  446 ctgcggat 453  Q
     |||||||    
T  26278388 atgcggat 26278395  T

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Target: chr3; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 352 - 453
Target Start/End: Complemental strand, 41358805 - 41358704
Alignment:
Q  352 cggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcgg 451  Q
    |||||||| ||||||||||||||||| |||| ||||  |||||||| ||||||||||||||||   |||||||||  ||||| ||| ||||||||| |||    
T  41358805 cggagccacccccagctagcctgggcgctagtccagactcagcttctactttctttgtagcaaactcaaccattattagaacttctcgcttttcctacgg 41358706  T
Q  452 at 453  Q
    ||    
T  41358705 at 41358704  T

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Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 344 - 444
Target Start/End: Original strand, 38239388 - 38239488
Alignment:
Q  344 atcaggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttt 443  Q
    |||||||||||||||| ||||||||| |||||||||| | ||||| ||| |||  ||| |||||||||||||| || ||||||| | ||||||| |||||    
T  38239388 atcaggggcggagccacccccagctaacctgggcactcgtccaggctcaacttttactatctttgtagcaagttcagccattactataacctctcgcttt 38239487  T
Q  444 t 444  Q
    |    
T  38239488 t 38239488  T

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Target: chr3; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 34 - 125
Target Start/End: Complemental strand, 49613732 - 49613641
Alignment:
Q  34 aaacaaaatttcggtctgatcatcaactcttaattgaggaattccaagaactccttgtgaaaacctcaagtcaagtaaacactcacttttag 125  Q
    |||||||||||| |||  ||| |||||| | |||||||||||| ||||||| | |  |||||||||||| ||||||||||||||||||||||    
T  49613732 aaacaaaatttcagtccaatcctcaactttcaattgaggaatttcaagaacccgtcctgaaaacctcaaatcaagtaaacactcacttttag 49613641  T

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Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 346 - 453
Target Start/End: Original strand, 44047520 - 44047628
Alignment:
Q  346 caggggcggagccatcccc-agctagcctgggc-actagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttt 443  Q
    |||||||||||||| |||| ||||||||||||| | || |||||| |||||| ||||||||||||||||||| || |||||||| ||||  | | |||||    
T  44047520 caggggcggagccaccccccagctagcctgggctagta-cccaggctcagctccaactttctttgtagcaagccctaccattactagaatttttagcttt 44047618  T
Q  444 tcctgcggat 453  Q
    ||||||||||    
T  44047619 tcctgcggat 44047628  T

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Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 346 - 453
Target Start/End: Complemental strand, 25392009 - 25391901
Alignment:
Q  346 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 444  Q
    |||||||||||||| |||| |||||||||||||    ||||||| |||||| |||||||||| |||||||| || |||||||| ||||  | | ||||||    
T  25392009 caggggcggagccaccccccagctagcctgggctaatgcccaggctcagctccaactttcttcgtagcaagccctaccattactagaatttttagctttt 25391910  T
Q  445 cctgcggat 453  Q
    |||||||||    
T  25391909 cctgcggat 25391901  T

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Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 453
Target Start/End: Complemental strand, 47511826 - 47511721
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttc 445  Q
    ||||||||||| || |||| |||||| ||| |||||| ||||  |||||||| | |||||||||| |||||||| ||||||| ||||||| | |||||||    
T  47511826 caggggcggagaca-ccccggctagcatggacactagtccagc-tcagcttctaatttctttgtaacaagtccagccattactagaacctttcgcttttc 47511729  T
Q  446 ctgcggat 453  Q
    ||||||||    
T  47511728 ctgcggat 47511721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 114
Target Start/End: Complemental strand, 49618723 - 49618640
Alignment:
Q  31 tccaaacaaaatttcggtctgatcatcaactcttaattgaggaattccaagaactccttgtgaaaacctcaagtcaagtaaaca 114  Q
    |||||| ||| || ||||| | || ||||||||||||||||||||| ||||||||| |   |||||||||||||||||||||||    
T  49618723 tccaaataaagttacggtccggtcctcaactcttaattgaggaatttcaagaactcgtccggaaaacctcaagtcaagtaaaca 49618640  T

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Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 380 - 453
Target Start/End: Original strand, 7500915 - 7500988
Alignment:
Q  380 tagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcggat 453  Q
    ||||||||| || ||| ||||||||||||||||||| ||||||||||| ||||  | | |||||||||||||||    
T  7500915 tagcccaggctcggctccaactttctttgtagcaagcccaaccattactagaatttttagcttttcctgcggat 7500988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 346 - 427
Target Start/End: Original strand, 54845987 - 54846068
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattac 427  Q
    |||||| ||| ||| ||||||||||| ||| |||||||||||  ||| |||| |||||||||||||||||| || |||||||    
T  54845987 caggggtggaaccacccccagctagcttggacactagcccagactcaacttctactttctttgtagcaagttcatccattac 54846068  T

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Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 447
Target Start/End: Original strand, 43447476 - 43447571
Alignment:
Q  347 aggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcc 446  Q
    |||| |||||||| || ||| |||||||||||||||| |||| |||| ||| ||||| ||||||||||||     |||||| ||||||||| ||||||||    
T  43447476 agggacggagccaccctcagttagcctgggcactagctcaggctcagtttctactttttttgtagcaagt-----cattaccagaacctctcgcttttcc 43447570  T

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Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 44625634 - 44625738
Alignment:
Q  346 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 444  Q
    |||||||||||||| |||| |||||||||||||    ||||||| || ||| ||||||||||||||||||| ||||| ||||| ||||  | | ||||||    
T  44625634 caggggcggagccaccccccagctagcctgggctagtgcccaggctcggctccaactttctttgtagcaagcccaactattactagaatttttagctttt 44625733  T
Q  445 cctgc 449  Q
    |||||    
T  44625734 cctgc 44625738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 453
Target Start/End: Original strand, 12909763 - 12909864
Alignment:
Q  346 caggggcggagccatcccc-agctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 444  Q
    |||||||||||||| |||| |||||||||||||       |||| |||||| ||||||||||||||||||| || |||||||| ||||  | | ||||||    
T  12909763 caggggcggagccaccccccagctagcctgggc-------caggctcagctccaactttctttgtagcaagccctaccattactagaatttttagctttt 12909855  T
Q  445 cctgcggat 453  Q
    |||||||||    
T  12909856 cctgcggat 12909864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 458
Target Start/End: Original strand, 14461007 - 14461114
Alignment:
Q  348 ggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcct 447  Q
    |||||||||||  ||||||| |||||||||    ||||||| |||||| ||| ||||||||||||||| || |||||||| ||||  | |  ||||||||    
T  14461007 ggggcggagcctcccccagcgagcctgggct---gcccaggctcagctccaattttctttgtagcaagccctaccattactagaatttttaacttttcct 14461103  T
Q  448 gcggatattta 458  Q
    |||||| ||||    
T  14461104 gcggattttta 14461114  T

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Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 320
Target Start/End: Original strand, 30956700 - 30956746
Alignment:
Q  274 tatacaaaaactatttaactatattttatctttagctaaagaaatag 320  Q
    ||||||||||| |||||||| |||||||||||| |||| ||||||||    
T  30956700 tatacaaaaacaatttaactttattttatcttttgctatagaaatag 30956746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 320
Target Start/End: Original strand, 30972512 - 30972558
Alignment:
Q  274 tatacaaaaactatttaactatattttatctttagctaaagaaatag 320  Q
    ||||||||||| |||||||| |||||||||||| |||| ||||||||    
T  30972512 tatacaaaaacaatttaactttattttatcttttgctatagaaatag 30972558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 449
Target Start/End: Complemental strand, 43700333 - 43700235
Alignment:
Q  351 gcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgc 449  Q
    ||||||||| |||||| |||||||| |    || |||| || ||| ||||||||||||||||||| ||||||||||| ||||  | | |||||||||||    
T  43700333 gcggagccacccccagttagcctggactagtgctcaggctcggctccaactttctttgtagcaagcccaaccattactagaatttttagcttttcctgc 43700235  T

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Target: scaffold0638 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 361 - 450
Target Start/End: Original strand, 4045 - 4134
Alignment:
Q  361 ccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcctgcg 450  Q
    |||||| ||||||||||||||||||||| |||||| ||| ||||||||||||||| ||| ||||||| ||||| | | ||||||||||||    
T  4045 ccccagttagcctgggcactagcccaggctcagctccaattttctttgtagcaagcccagccattactagaacttttagcttttcctgcg 4134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 348 - 453
Target Start/End: Original strand, 6843 - 6949
Alignment:
Q  348 ggggcggagccatcccca-gctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgcttttcc 446  Q
    |||||||||||  ||||| ||||||||||||||||||||||  | |||| ||||||||||||||||||| || |||||||| ||||  | | ||||||||    
T  6843 ggggcggagcctcccccaagctagcctgggcactagcccagacttagctccaactttctttgtagcaagccctaccattactagaatttttagcttttcc 6942  T
Q  447 tgcggat 453  Q
    |||||||    
T  6943 tgcggat 6949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 453
Target Start/End: Original strand, 11455 - 11562
Alignment:
Q  345 tcaggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaagtccaaccattacaagaacctcttgctttt 444  Q
    ||||||||||||||| ||||||||||||||| |    ||||||| |||||| ||||||||||||||||||| || |||||||| ||||  | || |||||    
T  11455 tcaggggcggagccacccccagctagcctggactagtgcccaggctcagctccaactttctttgtagcaagccctaccattactagaa-ttttttctttt 11553  T
Q  445 cctgcggat 453  Q
    |||||||||    
T  11554 cctgcggat 11562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 346 - 414
Target Start/End: Complemental strand, 109494 - 109427
Alignment:
Q  346 caggggcggagccatccccagctagcctgggcactagcccaggatcagcttcaactttctttgtagcaa 414  Q
    |||||| ||||||| ||||||||||| |||||||||| ||||| |||||| ||||||||||||||||||    
T  109494 caggggtggagcca-ccccagctagcttgggcactagtccaggctcagctccaactttctttgtagcaa 109427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 182
Target Start/End: Original strand, 5799 - 5861
Alignment:
Q  120 ttttaggctttgtttggagatttggagggaaggagaatggaagactttgagggatggaaaata 182  Q
    ||||||| |||||||||   ||||||||||||  ||| ||||||||||||||| |||||||||    
T  5799 ttttaggttttgtttgggagtttggagggaagaggaagggaagactttgaggggtggaaaata 5861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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