View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0770_high_3 (Length: 324)
Name: NF0770_high_3
Description: NF0770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0770_high_3 |
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| [»] scaffold0171 (3 HSPs) |
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| [»] scaffold0181 (1 HSPs) |
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Alignment Details
Target: scaffold0171 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 10 - 302
Target Start/End: Complemental strand, 19202 - 18910
Alignment:
| Q |
10 |
aacaaaatatcaagtagatccttaatatgagcaccttcacccttttccttccttttattcctttattcttgatgatcccttatcaccctctccatcaatg |
109 |
Q |
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||||||||||||||||||||| ||| |||| |||||||||||||||| |||||||| ||| ||| ||||||| ||||||||||||||||||||||||| |
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| T |
19202 |
aacaaaatatcaagtagatccctaacatgatcaccttcacccttttctttccttttcttcatttccacttgatgctcccttatcaccctctccatcaatg |
19103 |
T |
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| Q |
110 |
tgtcaaacctctccataacccctttaagccttttgttaaatccttgcatatcccaattcttaaaaaaccaaacaaaatccgacaaattaaacctccctga |
209 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
19102 |
tgtcaaacctctccataaccactttaagccttttgttaaatccttgcatatcccaattcttaaaaaaccaaataaaatccgacaaattaaacctccctga |
19003 |
T |
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| Q |
210 |
aagctctacactatcttgcaccatcttcctaatgtcttccacatcgctatcgttttcagcacatgttttactcattgccatagttgtgatgat |
302 |
Q |
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| T |
19002 |
aagctctacactatcttgcaccatcttcctaatgtcttccacatcgctatcgttttcagcacatgttttactcattgccatagttgtgatgat |
18910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 7 - 254
Target Start/End: Complemental strand, 24614 - 24367
Alignment:
| Q |
7 |
tccaacaaaatatcaagtagatccttaatatgagcaccttcacccttttccttccttttattcctttattcttgatgatcccttatcaccctctccatca |
106 |
Q |
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| T |
24614 |
tccaacaaaatatcaagcaaatccttaacatgagcaccttcgccattttcctttcttttcttcatttcctcttgatgctcccttatgacactctcaatca |
24515 |
T |
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| Q |
107 |
atgtgtcaaacctctccataacccctttaagccttttgttaaatccttgcatatcccaattcttaaaaaaccaaacaaaatccgacaaattaaacctccc |
206 |
Q |
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|||||| ||| | | ||||| | |||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
24514 |
ttgtgtcgaacatgttcataagctcttttagccttttgttaaatccttgcaaatcccaattcttaaaaaaccaaataaaatccgacaaattaaactgccc |
24415 |
T |
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| Q |
207 |
tgaaagctctacactatcttgcaccatcttcctaatgtcttccacatc |
254 |
Q |
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| T |
24414 |
tccaagttctgaacaatctttaaccaacttcctaatgtcttccacatc |
24367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 11064 - 10965
Alignment:
| Q |
7 |
tccaacaaaatatcaagtagatccttaatatgagcaccttcacccttttccttccttttattcctttattcttgatgatcccttatcaccctctccatca |
106 |
Q |
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||||||||||||||||| |||||| ||| ||||| |||||||| |||||||| |||| ||||||| | |||| | ||||||||| || ||||||||| |
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| T |
11064 |
tccaacaaaatatcaagaagatccctaacatgagaaccttcactgttttcctttattttcttcctttccttttgacggtcccttatcgccatctccatca |
10965 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 7 - 290
Target Start/End: Original strand, 11108 - 11382
Alignment:
| Q |
7 |
tccaacaaaatatcaagtagatccttaatatgagcaccttcacccttttccttccttttattcctttattcttgatgatcccttatcaccctctccatca |
106 |
Q |
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||||||||||||||||||| |||| || ||||||||||||||||||| |||| ||||| | ||||||| |||||||| ||||||||| || |
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| T |
11108 |
tccaacaaaatatcaagtatatccctatcatgagcaccttcaccctttacctttcttttct---------cttgatgttcccttatggccctctccaaca |
11198 |
T |
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| Q |
107 |
atgtgtcaaacctctccataacccctttaagccttttgttaaatccttgcatatcccaattcttaaaaaaccaaacaaaatccgacaaattaaacctccc |
206 |
Q |
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| T |
11199 |
ttatgtcaaacctttccatagcaactttaagccttttatgtattccttgtaaatccaaattcttgcaaacccaaataaaatctgacacattaaacgtccc |
11298 |
T |
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| Q |
207 |
tgaaagctctacactatcttgcaccatcttcctaatgtcttccacatcgctatcgttttcagcacatgttttactcattgccat |
290 |
Q |
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| |||||||| | | || | || ||||| |||||| ||||| || || ||||| ||||||| |||||||||||| |||||||| |
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| T |
11299 |
tccaagctctaaaatgtccttcagcatctccctaatttcttcaacttcactatcattttcagaacatgttttacttattgccat |
11382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 38808615 - 38808719
Alignment:
| Q |
12 |
caaaatatcaagtagatccttaatatgagcaccttcacccttttccttcctt-ttattcctttattcttgatgatcccttatcaccctctccatcaatgt |
110 |
Q |
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|||||||||||| |||||| ||| | |||||||||||| ||||||||||| || |||||| |||||||| |||||||||||||||||||||| ||| |
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| T |
38808615 |
caaaatatcaagcagatccctaacacaagcaccttcaccactttccttccttattcctcctttcctcttgatgctcccttatcaccctctccatcattgt |
38808714 |
T |
|
| Q |
111 |
gtcaa |
115 |
Q |
| |
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||||| |
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| T |
38808715 |
gtcaa |
38808719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 92 - 245
Target Start/End: Complemental strand, 24940084 - 24939931
Alignment:
| Q |
92 |
tcaccctctccatcaatgtgtcaaacctctccataacccctttaagccttttgttaaatccttgcatatcccaattcttaaaaaaccaaacaaaatccga |
191 |
Q |
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|||| |||||||||| | |||||||||| ||| ||| | |||||||||||| || | ||| | | |||| |||||||| ||||||||| ||||||||| |
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| T |
24940084 |
tcactctctccatcattttgtcaaacctgtccctaattcttttaagccttttattcattccataaaaatccaaattcttacaaaaccaaataaaatccga |
24939985 |
T |
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| Q |
192 |
caaattaaacctccctgaaagctctacactatcttgcaccatcttcctaatgtc |
245 |
Q |
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| T |
24939984 |
cacattaaacttccctgcaagctcggcagtgtctgtcaccatcttccgaatgtc |
24939931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 36734235 - 36734155
Alignment:
| Q |
159 |
atcccaattcttaaaaaaccaaacaaaatccgacaaattaaacctccctgaaagctctacactatcttgcaccatcttcct |
239 |
Q |
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|||||| |||||||||||||||| |||||| || | ||||||| |||| | ||| | |||| | |||||||||| |||||| |
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| T |
36734235 |
atcccagttcttaaaaaaccaaataaaatcagaaatattaaacttccccgtaagatgtacagtgtcttgcaccaacttcct |
36734155 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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