View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0770_high_6 (Length: 290)
Name: NF0770_high_6
Description: NF0770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0770_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 7281966 - 7282021
Alignment:
| Q |
30 |
ggtccttctacatttactgttggaaacgcaatgtttatcttcctaaaggtgaaacc |
85 |
Q |
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| T |
7281966 |
ggtccttttacatttactgttggaaacgcaatgtttatcttcctaaaggtgaaacc |
7282021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 7304422 - 7304471
Alignment:
| Q |
30 |
ggtccttctacatttactgttggaaacgcaatgtttatcttcctaaaggt |
79 |
Q |
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| T |
7304422 |
ggtccttctacatttactattggaaacgcaatgtttatcttcctaaaggt |
7304471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 7320424 - 7320474
Alignment:
| Q |
30 |
ggtccttctacatttactgttggaaacgcaatgtttatcttcctaaaggtg |
80 |
Q |
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| T |
7320424 |
ggtccttctacatttactattggaaacaaaatgtttatgtccctaaaggtg |
7320474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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