View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0770_high_9 (Length: 259)

Name: NF0770_high_9
Description: NF0770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0770_high_9
NF0770_high_9
[»] chr4 (14 HSPs)
chr4 (1-246)||(837674-837915)
chr4 (160-241)||(829656-829737)
chr4 (66-134)||(829589-829658)
chr4 (59-144)||(8443439-8443525)
chr4 (66-143)||(10482181-10482259)
chr4 (79-143)||(10468042-10468107)
chr4 (78-135)||(6392832-6392890)
chr4 (78-146)||(6372442-6372511)
chr4 (72-144)||(53774839-53774912)
chr4 (59-106)||(8447639-8447686)
chr4 (90-146)||(10464266-10464323)
chr4 (90-146)||(10475204-10475258)
chr4 (68-144)||(11970976-11971053)
chr4 (59-146)||(10493674-10493762)
[»] chr1 (1 HSPs)
chr1 (64-144)||(50645475-50645556)
[»] chr2 (2 HSPs)
chr2 (73-145)||(25377072-25377145)
chr2 (72-144)||(20975557-20975630)
[»] chr3 (2 HSPs)
chr3 (66-145)||(25915289-25915369)
chr3 (72-145)||(25901277-25901351)
[»] chr7 (4 HSPs)
chr7 (72-144)||(22063641-22063714)
chr7 (72-134)||(20133315-20133378)
chr7 (68-108)||(26256811-26256851)
chr7 (72-143)||(36260253-36260325)
[»] chr6 (1 HSPs)
chr6 (68-143)||(20770650-20770726)


Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 837915 - 837674
Alignment:
Q  1 ttctcagaaagatatatacaatggcaacaaattaaaacctttaaaccttgtttgtttctgaatataaattatgatagctaattttaaataattgaatcca 100  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||||    |||||||||||||||||||||||||||||||||||||||||||    
T  837915 ttctcagaaagatatatacagtggcaacaaattaaaacctttacaccttgttt----ctgaatataaattatgatagctaattttaaataattgaatcca 837820  T
Q  101 agactctt-aacatcaaaatctttcatttgccatataacaaaatgggnnnnnnnnngggaataatgacaaaagcaaatgcagcccattaaacgcacaagt 199  Q
    |||||||| |||| ||||||  |||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||| ||||||||    
T  837819 agactcttgaacaccaaaattcttcatttgccatataacaaaatgggttttttttc-ggaataatgacaaaagcaaatgcagcccattaaatgcacaagt 837721  T
Q  200 gatggctgatagaaccgctccttaacaaaaacccgaggcagcaacag 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  837720 gatggctgatagaaccgctccttaacaaaaacccgaggcagcaacag 837674  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 241
Target Start/End: Original strand, 829656 - 829737
Alignment:
Q  160 ataatgacaaaagcaaatgcagcccattaaacgcacaagtgatggctgatagaaccgctccttaacaaaaacccgaggcagc 241  Q
    |||||||||||||||||| ||| |||| |||| ||||||||||||| ||||||||  |||||||||||||||| ||||||||    
T  829656 ataatgacaaaagcaaatacagtccatcaaacccacaagtgatggccgatagaacaactccttaacaaaaacctgaggcagc 829737  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 134
Target Start/End: Original strand, 829589 - 829658
Alignment:
Q  66 aaattatgatagctaattttaaataattgaatccaagactctt-aacatcaaaatctttcatttgccata 134  Q
    ||||||||||| ||||||||||||||||||| ||||||||||| |||| ||||||| |||||||| ||||    
T  829589 aaattatgataactaattttaaataattgaacccaagactcttgaacaccaaaatccttcatttggcata 829658  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 8443439 - 8443525
Alignment:
Q  59 tgaatataaattatgatagctaattttaaataattgaatccaagactc-ttaacatcaaaatctttcatttgccatataacaaaatg 144  Q
    |||| ||||||| ||||| ||||||||||||||||||||||||||||| | |||  ||||||| ||||| ||||| |||||| ||||    
T  8443439 tgaaaataaattctgataactaattttaaataattgaatccaagactcgtgaactccaaaatccttcatctgccaaataacataatg 8443525  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 10482259 - 10482181
Alignment:
Q  66 aaattatgatagctaattttaaataattgaatccaagac-tcttaacatcaaaatctttcatttgccatataacaaaat 143  Q
    ||||| |||||  ||||||||||||||||||||||||||  || |||  ||||||| ||||||||||||||||||||||    
T  10482259 aaattctgataagtaattttaaataattgaatccaagacgactgaactccaaaatccttcatttgccatataacaaaat 10482181  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 10468107 - 10468042
Alignment:
Q  79 taattttaaataattgaatccaagact-cttaacatcaaaatctttcatttgccatataacaaaat 143  Q
    ||||||||||||||||||||||||||  || |||  ||||||| ||||||||||||||||||||||    
T  10468107 taattttaaataattgaatccaagacgactgaactccaaaatccttcatttgccatataacaaaat 10468042  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 6392890 - 6392832
Alignment:
Q  78 ctaattttaaataattgaatccaagactc-ttaacatcaaaatctttcatttgccatat 135  Q
    ||||||||||||||||||||||||||||| | |||  ||||||| ||||||||||||||    
T  6392890 ctaattttaaataattgaatccaagactcgtgaactccaaaatccttcatttgccatat 6392832  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 6372511 - 6372442
Alignment:
Q  78 ctaattttaaataattgaatccaagactctt-aacatcaaaatctttcatttgccatataacaaaatggg 146  Q
    ||||||||| ||||||||||| ||||||||| |||  || |||| |||||||||||||||| ||||||||    
T  6372511 ctaattttatataattgaatctaagactcttgaactccagaatccttcatttgccatataataaaatggg 6372442  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 53774912 - 53774839
Alignment:
Q  72 tgatagctaattttaaataattgaatccaagactctt-aacatcaaaatctttcatttgccatataacaaaatg 144  Q
    ||||| ||||||||||  |||||| |||||||||||| |||  |||| || |||||||||||||||||||||||    
T  53774912 tgataactaattttaaggaattgagtccaagactcttcaactccaaattccttcatttgccatataacaaaatg 53774839  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 106
Target Start/End: Original strand, 8447639 - 8447686
Alignment:
Q  59 tgaatataaattatgatagctaattttaaataattgaatccaagactc 106  Q
    |||| ||||||| |||||  ||||||||||||||||||||||||||||    
T  8447639 tgaaaataaattctgataattaattttaaataattgaatccaagactc 8447686  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 10464323 - 10464266
Alignment:
Q  90 aattgaatccaagactcttaa-catcaaaatctttcatttgccatataacaaaatggg 146  Q
    ||||||||||||||||| | | |  ||||||| |||||||||||||||||||||||||    
T  10464323 aattgaatccaagactcctgatccccaaaatccttcatttgccatataacaaaatggg 10464266  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 10475258 - 10475204
Alignment:
Q  90 aattgaatccaagactcttaacatcaaaatctttcatttgccatataacaaaatggg 146  Q
    ||||||||||||||||| |  |  ||||||| |||||||||||||||||||||||||    
T  10475258 aattgaatccaagactcctctc--caaaatccttcatttgccatataacaaaatggg 10475204  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 144
Target Start/End: Original strand, 11970976 - 11971053
Alignment:
Q  68 attatgatagctaattttaaataattgaatccaagactctta-acatcaaaatctttcatttgccatataacaaaatg 144  Q
    ||||||||| |||||| |||  |||||| ||||||||||||  ||  |||| || |||||||||||||||||||||||    
T  11970976 attatgataactaattctaagaaattgagtccaagactcttccactccaaattccttcatttgccatataacaaaatg 11971053  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 146
Target Start/End: Complemental strand, 10493762 - 10493674
Alignment:
Q  59 tgaatataaattatgatagctaattttaaataattgaatccaagactcttaacatc-aaaatctttcatttgccatataacaaaatggg 146  Q
    |||| ||||||| | ||| | ||||||| ||||||||||||||||||| | |  || |||||||||||||| ||| || ||||||||||    
T  10493762 tgaaaataaattcttataaccaattttatataattgaatccaagactcatgatctcgaaaatctttcattttccagattacaaaatggg 10493674  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 50645475 - 50645556
Alignment:
Q  64 ataaattatgatagctaattttaaataattgaatccaagactctt-aacatcaaaatctttcatttgccatataacaaaatg 144  Q
    ||||||| | ||| ||||||||||||||||||||||||||||||| |||  ||||||| ||||||||||| |||||||||||    
T  50645475 ataaattgttataactaattttaaataattgaatccaagactcttgaactccaaaatccttcatttgccacataacaaaatg 50645556  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 25377145 - 25377072
Alignment:
Q  73 gatagctaattttaaataattgaatccaagactctt-aacatcaaaatctttcatttgccatataacaaaatgg 145  Q
    |||| ||||||||||||||||||||||||||||||| |||  ||||||| |||||   ||||||||||||||||    
T  25377145 gataactaattttaaataattgaatccaagactcttgaactccaaaatccttcatcatccatataacaaaatgg 25377072  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 20975630 - 20975557
Alignment:
Q  72 tgatagctaattttaaataattgaatccaagactctt-aacatcaaaatctttcatttgccatataacaaaatg 144  Q
    ||||| |||| |||||| |||||||||||||| |||| |||  |||| ||  ||||||||||||||||||||||    
T  20975630 tgatacctaaatttaaacaattgaatccaagaatcttcaactccaaattccctcatttgccatataacaaaatg 20975557  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 145
Target Start/End: Original strand, 25915289 - 25915369
Alignment:
Q  66 aaattatgatagctaattttaaataattgaatccaagactctt-aacatcaaaatctttcatttgccatataacaaaatgg 145  Q
    ||||| ||||| |||||||| || ||||||||||||||||||| |||   |||||| ||||||| ||||||||||||||||    
T  25915289 aaattctgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatgg 25915369  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 25901277 - 25901351
Alignment:
Q  72 tgatagctaattttaaataattgaatccaagactctt-aacatcaaaatctttcatttgccatataacaaaatgg 145  Q
    ||||| |||||||| || ||||||||||||||||||| |||   |||||| ||||||| ||||||||||||||||    
T  25901277 tgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatgg 25901351  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 22063714 - 22063641
Alignment:
Q  72 tgatagctaattttaaataattgaatccaagactcttaacatcaaaat-ctttcatttgccatataacaaaatg 144  Q
    ||||| |||||||| ||||| ||| |||||||||||| | ||| |||| | |||||||||||||||||||||||    
T  22063714 tgataactaattttgaataactgagtccaagactcttgaaatccaaattccttcatttgccatataacaaaatg 22063641  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 20133315 - 20133378
Alignment:
Q  72 tgatagctaattttaaataattgaatccaagactctt-aacatcaaaatctttcatttgccata 134  Q
    ||||||||||| |||||||| ||||||||||| |||| |||  |||| ||||||||||||||||    
T  20133315 tgatagctaatgttaaataactgaatccaagaatcttcaactccaaattctttcatttgccata 20133378  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 26256851 - 26256811
Alignment:
Q  68 attatgatagctaattttaaataattgaatccaagactctt 108  Q
    |||||| |||||||| |||||||||||| ||||||||||||    
T  26256851 attatggtagctaatcttaaataattgagtccaagactctt 26256811  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 143
Target Start/End: Complemental strand, 36260325 - 36260253
Alignment:
Q  72 tgatagctaattttaaataattgaatccaagactctt-aacatcaaaatctttcatttgccatataacaaaat 143  Q
    ||||||||||||||||  | ||||||||||||||||| |||  |||| |||| ||| | ||||||||||||||    
T  36260325 tgatagctaattttaataagttgaatccaagactcttcaactccaaattcttccatcttccatataacaaaat 36260253  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 20770726 - 20770650
Alignment:
Q  68 attatgatagctaattttaaataattgaatccaagactctt-aacatcaaaatctttcatttgccatataacaaaat 143  Q
    ||||||||| ||||||||||  ||||||||||| ||||||| ||   |||| || ||||||||||||||||||||||    
T  20770726 attatgataactaattttaaggaattgaatccatgactcttcaattccaaattccttcatttgccatataacaaaat 20770650  T

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