View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0770_low_10 (Length: 318)
Name: NF0770_low_10
Description: NF0770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0770_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 2244457 - 2244218
Alignment:
| Q |
1 |
tcagaacctgaaatttgtcactcaccactgagttgaaaaaacaaatcaactccgcagctttccctttaccgtcgagtgaatcagtgcaactcggcgttct |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2244457 |
tcagaacctgaaatttgtcactcactactgagttgaaaaaacaaatcaactccgtagctttccctttaccgtcgagtgaatcagtgcaactcggcgttct |
2244358 |
T |
|
| Q |
101 |
ccacagctaggaattgagcgtgaaggattgtgcagtcagtaaatgaaacctagcaattctcaaatgaaaataaaaattagtaatttagtaacataatgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2244357 |
ccacagctaggaattgagcgtgaaggattgtgcagtcagtaaatgaaacctagcaattctcaaatgaaaataaaaattagtaatttagtaacataatgct |
2244258 |
T |
|
| Q |
201 |
acctagaatcaaaagattaagccaaaagaatcctctctct |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2244257 |
acctagaatcaaaagattaagccaaaagaatcctctctct |
2244218 |
T |
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