View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0770_low_15 (Length: 288)
Name: NF0770_low_15
Description: NF0770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0770_low_15 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 30 - 288
Target Start/End: Original strand, 13768210 - 13768468
Alignment:
| Q |
30 |
ataatatccacaaggatatgcttgaagaatcaacaaagtgtaaaaccaaaatggatttgaaggaacaacttttcgaagtttataatgctctagacaagcc |
129 |
Q |
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| T |
13768210 |
ataatatccacaaggatatgcttgaagaatcaacaaagtgtaaaaccaaaatggatttgaaggaacaacttttcgaagtttataatgctctagacaagcc |
13768309 |
T |
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| Q |
130 |
aaacattgaattggatgatagaacatgtgaaataagtgaaatggaatttgaattacaaatgtggaagtcgtttgtcaaaagtttgaagaacgatcttgaa |
229 |
Q |
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| T |
13768310 |
aaatattgaattggatgatagaacatgtgaaataagtgaaatggaatttgaattacaaatgtggaagtcgtttgtcaaaagtttgaagaacgatcttgaa |
13768409 |
T |
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| Q |
230 |
gaaaaccgcgtaatgcgaaaagcactcgaaaattcactacttgctcaagtagattttaa |
288 |
Q |
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| T |
13768410 |
gaaagccgcgtaatgcgaaaagcactcgaaaattcactacttgctcaagtagattttaa |
13768468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 233
Target Start/End: Original strand, 28765370 - 28765467
Alignment:
| Q |
136 |
tgaattggatgatagaacatgtgaaataagtgaaatggaatttgaattacaaatgtggaagtcgtttgtcaaaagtttgaagaacgatcttgaagaaa |
233 |
Q |
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| T |
28765370 |
tgaactggatgagagaatttgcgaaagaagtgaaatggaatttgaattgcaaatatggaagtcaattcttgatcgtttgaagaatgatcttgaagaaa |
28765467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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