View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0770_low_22 (Length: 251)
Name: NF0770_low_22
Description: NF0770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0770_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 31384824 - 31384579
Alignment:
| Q |
1 |
ttggatatgcttgagattgtaagttgcgttgattttcatttatttgaaaaatataaca---ctagctgcctttaccgtataccactcgcgcgtacaaatt |
97 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| | ||| ||||| |||||||| |
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| T |
31384824 |
ttggatatgcttgagattgtaagttgcgttgactttcatttatttgaaaaatataacaacactagctgcctttaccgtgtgccagtcgcg--tacaaatt |
31384727 |
T |
|
| Q |
98 |
ttcgcactatatagcaattctatttgggtaatttccgctttcctcctaaatttccttttctttctatagcttaatttcccttttaattcgacagcttaaa |
197 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31384726 |
ttcgcactatatagcaattctatttgggtaattgccgctttcctcctaaatttccttttctttctatagcttaatttcccttttaattcgacagcttaaa |
31384627 |
T |
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| Q |
198 |
tttccttgaaatttcatccgaaagaaaatagtatatgttctctgctcc |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31384626 |
tttccttgaaatttcatccgaaagaaaatagtatatgttctctgctcc |
31384579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 26558451 - 26558567
Alignment:
| Q |
4 |
gatatgcttgagattgtaagttgcgttgattttcatttatttgaaaaat---ataacactagctgcctttaccgtataccactcgcgcgtacaaattttc |
100 |
Q |
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||||||||||||||||||| ||| ||||| ||||||||||||||||||| |||||||||||| ||| | ||| | ||| ||||| | ||||||||| |
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| T |
26558451 |
gatatgcttgagattgtaaattgtgttgactttcatttatttgaaaaatataataacactagctacctgcatcgtgtgccagtcgcg-ttgcaaattttc |
26558549 |
T |
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| Q |
101 |
gcactatatagcaattct |
118 |
Q |
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||||| |||||||||||| |
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| T |
26558550 |
gcactgtatagcaattct |
26558567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 23523112 - 23523185
Alignment:
| Q |
1 |
ttggatatgcttgagattgtaagttgcgttgattttcatttatttgaaaaat---ataacactagctgccttta |
71 |
Q |
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|||||||| ||||||||||||| | ||||| ||||||||||| ||||||| ||||||||||||||||||| |
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| T |
23523112 |
ttggatataattgagattgtaagctttgttgactttcatttattagaaaaatataataacactagctgccttta |
23523185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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