View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0770_low_4 (Length: 377)
Name: NF0770_low_4
Description: NF0770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0770_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 65 - 371
Target Start/End: Complemental strand, 37775087 - 37774781
Alignment:
| Q |
65 |
ccattaccatgaatcttccatcatcaaaacccattctctctgaatctcctcccaacatcttccccttcgtcaaaggcgaatgctgtaactgcggcatcaa |
164 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37775087 |
ccattaccatgaatcttccatcatcaaaacccattctctctgaatctcctcccaacatcttccccttcgtcaaaggcgaatgctgtaactgcggcatcaa |
37774988 |
T |
|
| Q |
165 |
agaccgttggcttctccacaacgtcgtcgttcgcggcgtcgatcgtcgaatctgcacttcctgcgtcctccgtcttcatccatcatcattctgtccttgt |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37774987 |
agaccgttggcttctccacaacgtcgtcgttcgcggcgtcgatcgtcgaatctgcacttcctgcgtcctccgtcttcatccatcatcattctgtccttgt |
37774888 |
T |
|
| Q |
265 |
tgcttcgaattctacgaaaaccctctttccaccacttcctctgcgcaccgtttcgtttcctgcatcaaatgctcttctctcagccatatccattgcctct |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37774887 |
tgcttcgaattctacgaaaaccctctttccaccacttcctctgcgcaccgtttcgtttcctgcatcaaatgctcttctctcagccatatccattgcctct |
37774788 |
T |
|
| Q |
365 |
ctgctcc |
371 |
Q |
| |
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|| |||| |
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| T |
37774787 |
cttctcc |
37774781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 72 - 371
Target Start/End: Original strand, 8814533 - 8814832
Alignment:
| Q |
72 |
catgaatcttccatcatcaaaacccattctctctgaatctcctcccaacatcttccccttcgtcaaaggcgaatgctgtaactgcggcatcaaagaccgt |
171 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||| |
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| T |
8814533 |
catgaatcttccatcatcaaaacccattctctctaaatcccctcccaacatcttccccttcgtcaaaggcaaatgttgtaactgtggcatcaaagaccgc |
8814632 |
T |
|
| Q |
172 |
tggcttctccacaacgtcgtcgttcgcggcgtcgatcgtcgaatctgcacttcctgcgtcctccgtcttcatccatcatcattctgtccttgttgcttcg |
271 |
Q |
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||||||||||||||||| || |||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8814633 |
tggcttctccacaacgttgttgttcgcggcgtcgatcgtggaatctgcacctcttgcgtcctccgtcttcatccatcatcattctgcccttgttgcttca |
8814732 |
T |
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| Q |
272 |
aattctacgaaaaccctctttccaccacttcctctgcgcaccgtttcgtttcctgcatcaaatgctcttctctcagccatatccattgcctctctgctcc |
371 |
Q |
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|||||||||||||||||||||||||||||||| || ||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8814733 |
aattctacgaaaaccctctttccaccacttccactacgcactgtttcatctcctgcatcaaatgctcttctctcagccatatccattgcctctcttctcc |
8814832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 16603134 - 16603202
Alignment:
| Q |
74 |
tgaatcttccatcatcaaaacccattctctctgaatctcctcccaacatcttccccttcgtcaaaggcg |
142 |
Q |
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|||||||||||| |||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
16603134 |
tgaatcttccataatcagaacccattctctctgaatcccctcccaacatattccccttcgtcaaaggcg |
16603202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 72 - 142
Target Start/End: Complemental strand, 43393770 - 43393700
Alignment:
| Q |
72 |
catgaatcttccatcatcaaaacccattctctctgaatctcctcccaacatcttccccttcgtcaaaggcg |
142 |
Q |
| |
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|||||||||||||| |||||||||||||| || |||||| ||||||||||| ||||||||||||||||||| |
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| T |
43393770 |
catgaatcttccataatcaaaacccattccctttgaatcccctcccaacatattccccttcgtcaaaggcg |
43393700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 142
Target Start/End: Complemental strand, 23073162 - 23073111
Alignment:
| Q |
91 |
aaacccattctctctgaatctcctcccaacatcttccccttcgtcaaaggcg |
142 |
Q |
| |
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|||||||||| || |||||| ||||||||||| ||||||||||||||||||| |
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| T |
23073162 |
aaacccattccctttgaatcccctcccaacatattccccttcgtcaaaggcg |
23073111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 18573293 - 18573363
Alignment:
| Q |
72 |
catgaatcttccatcatcaaaacccattctctctgaatctcctcccaacatcttccccttcgtcaaaggcg |
142 |
Q |
| |
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|||||||||||||| ||||||||| |||| || |||||| ||||||||||| ||||||||||||||||||| |
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| T |
18573293 |
catgaatcttccataatcaaaacctattccctttgaatcccctcccaacatattccccttcgtcaaaggcg |
18573363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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