View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0770_low_6 (Length: 345)

Name: NF0770_low_6
Description: NF0770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0770_low_6
NF0770_low_6
[»] chr8 (5 HSPs)
chr8 (89-324)||(23710595-23710834)
chr8 (88-324)||(754007-754247)
chr8 (89-323)||(9173796-9174019)
chr8 (89-305)||(9710339-9710557)
chr8 (89-225)||(14822476-14822616)
[»] chr1 (6 HSPs)
chr1 (89-323)||(50515267-50515504)
chr1 (90-318)||(45910480-45910711)
chr1 (89-324)||(44713162-44713400)
chr1 (89-144)||(16768008-16768063)
chr1 (89-133)||(6851379-6851423)
chr1 (89-125)||(10548343-10548379)
[»] chr7 (3 HSPs)
chr7 (89-317)||(41257429-41257660)
chr7 (89-324)||(19215464-19215701)
chr7 (254-324)||(15889272-15889342)
[»] chr2 (5 HSPs)
chr2 (89-317)||(38619180-38619411)
chr2 (89-324)||(17312591-17312829)
chr2 (89-316)||(9635368-9635599)
chr2 (89-136)||(19991628-19991675)
chr2 (93-131)||(26262701-26262739)
[»] chr5 (6 HSPs)
chr5 (89-324)||(25761173-25761411)
chr5 (89-316)||(13850788-13851018)
chr5 (89-324)||(38965581-38965819)
chr5 (89-308)||(20236255-20236476)
chr5 (89-186)||(23352191-23352292)
chr5 (157-317)||(34833968-34834127)
[»] chr6 (2 HSPs)
chr6 (89-316)||(18459835-18460070)
chr6 (89-144)||(24133379-24133434)
[»] chr3 (5 HSPs)
chr3 (89-316)||(6162119-6162350)
chr3 (89-314)||(52972518-52972747)
chr3 (89-324)||(54586335-54586574)
chr3 (93-145)||(35309892-35309944)
chr3 (93-145)||(11519015-11519067)


Alignment Details
Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 89 - 324
Target Start/End: Complemental strand, 23710834 - 23710595
Alignment:
Q  89 acatcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccatt----ttttaggcgatttcctttggatcacgtcatatgatctgta 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||| |||||||||||||||| ||||    
T  23710834 acatcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccattcgttttttaggcgatttccttttgatcacgtcatatgatatgta 23710735  T
Q  185 ctgatccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgttcatattatgacta 284  Q
    |||   |||||| |||||| |||| ||||||||||||||||||||||||||||||||||  || |||| ||||||| ||||| ||||||| || ||||||    
T  23710734 ctgtaacgttccagaatatgaaattcggactgcattcatgcgttccggatttcgaattctagactgcaccagtacataaactatgttcattttctgacta 23710635  T
Q  285 tgcttggcattgttttcagatatggttgttccggatgatg 324  Q
    ||| || || |||||| ||||||||||||| ||| |||||    
T  23710634 tgcatgacactgtttttagatatggttgtttcggttgatg 23710595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 88 - 324
Target Start/End: Original strand, 754007 - 754247
Alignment:
Q  88 gacatcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccatt----ttttaggcgatttcctttggatcacgtcatatgatctgt 183  Q
    |||||||||||||| | |||||||||||| |||||||||||||||||||||||||||    |||||||||||||||||| |||||| |||||||||||||    
T  754007 gacatcatcatttttgactgaatgcaaagataatgtgtatataaaccttcccccattcgttttttaggcgatttccttttgatcacttcatatgatctgt 754106  T
Q  184 actgatccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgttcatattatgact 283  Q
    ||||  ||||||| |||||| |||||||||||||||||||||||||| ||||| ||| ||| || |||| ||| ||||||||||||||||| || | |||    
T  754107 actgtaccgttccagaatatgaaatccggactgcattcatgcgttccagattttgaaatccagagtgcaccagcacagaaactgtgttcattttctaact 754206  T
Q  284 atgcttggcattgttttcagatatggttgttccggatgatg 324  Q
    |||| || || |||||| ||||||||||||||||| |||||    
T  754207 atgcctgtcaatgtttttagatatggttgttccggttgatg 754247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 89 - 323
Target Start/End: Complemental strand, 9174019 - 9173796
Alignment:
Q  89 acatcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttccccca----ttttttaggcgatttcctttggatcacgtcatatgatctgta 184  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||    ||||||||| ||||| |||| |||||||||||||||||||||    
T  9174019 acatcatcatttttgactgaatgcaaaggtaatgtgtatataaaccttcccccattcgttttttaggagattttcttttgatcacgtcatatgatctgta 9173920  T
Q  185 ctgatccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgttcatattatgacta 284  Q
    ||      | ||||         ||||||||| |||||||||||||||||||| || ||| || |||| ||||||||||||| ||||||| || ||||||    
T  9173919 ct-----ctaccgg---------tccggactggattcatgcgttccggatttcaaaatccagactgcaccagtacagaaactatgttcattttctgacta 9173834  T
Q  285 tgcttggcattgttttcagatatggttgttccggatgat 323  Q
    ||| | ||| |||||||||||||||||| ||||| ||||    
T  9173833 tgcct-gcactgttttcagatatggttgctccggttgat 9173796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 89 - 305
Target Start/End: Complemental strand, 9710557 - 9710339
Alignment:
Q  89 acatcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccc----cattttttaggcgatttcctttggatcacgtcatatgatctgta 184  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||    |||||||||||| |||| |||| ||||| |||||||||| || |    
T  9710557 acatcatcattttcgactgaatgcaaaggtaatgtgtatat-aaccttcccccattcattttttaggcaattttcttttgatcatgtcatatgatatgca 9710459  T
Q  185 ctgatccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgttcatattatgacta 284  Q
    |||  |  || |||| ||   ||||||||||| |||||||| |||| || |||||| ||| || |||| ||||||||||||||||||||| || ||||||    
T  9710458 ctgtactttttcggactacgcaatccggactggattcatgctttccagagttcgaaatccagactgcaccagtacagaaactgtgttcattttctgacta 9710359  T
Q  285 tgcttggcattgttttcagat 305  Q
    ||| | ||| |||||||||||    
T  9710358 tgcct-gcactgttttcagat 9710339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 89 - 225
Target Start/End: Original strand, 14822476 - 14822616
Alignment:
Q  89 acatcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccatt----ttttaggcgatttcctttggatcacgtcatatgatctgta 184  Q
    ||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||    ||||| ||||||||||||  ||||| |||||||||| |||    
T  14822476 acatcatcatttttgtctaaatgtaaaggtaatgtgtatataaaccttcccccattcgaattttaagcgatttccttttaatcacatcatatgatccgta 14822575  T
Q  185 ctgatccgttccggaatattaaatccggactgcattcatgc 225  Q
    |||   | |||||||| ||||||||||||||||||||||||    
T  14822576 ctggaacattccggaaaattaaatccggactgcattcatgc 14822616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 89 - 323
Target Start/End: Original strand, 50515267 - 50515504
Alignment:
Q  89 acatcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccattt----tttaggcgatttcctttggatcacgtcatatgatctgta 184  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    ||||||||||||||||| |||||||||||||||||||||    
T  50515267 acatcatcattttcgactgaatgcaaaggtaatgtgtatataaacctttccccatttgttttttaggcgatttccttttgatcacgtcatatgatctgta 50515366  T
Q  185 ctgatccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgttcatattatgacta 284  Q
    |||  || ||||||| |||  ||||||||||| |||||||| ||||||| |||||| |||||| | || ||||||| ||||||||||||| || ||||||    
T  50515367 ctgtacctttccggactatgcaatccggactggattcatgctttccggaattcgaaatccggactacaccagtacaaaaactgtgttcattttttgacta 50515466  T
Q  285 tgcttggcattgttttcagatatggttgttccggatgat 323  Q
    ||| | ||| |||||||| ||||||||||||||| ||||    
T  50515467 tgcat-gcactgttttcatatatggttgttccggttgat 50515504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 90 - 318
Target Start/End: Complemental strand, 45910711 - 45910480
Alignment:
Q  90 catcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccatt----ttttaggcgatttcctttggatcacgtcatatgatctgtac 185  Q
    |||||||||||| | ||||||||||||||||||| |||||||||||| |||||||    ||||||| |||||||||| ||||| ||||||||||||||||    
T  45910711 catcatcatttttgactgaatgcaaaggtaatgtatatataaacctttccccattcattttttaggtgatttccttttgatcatgtcatatgatctgtac 45910612  T
Q  186 tgatccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgttcatattatgactat 285  Q
    ||  || ||||||| |||  ||||||||||| |||||||||||| ||| |||||| | |||| |||| ||||||||||||||||||||| || |||||||    
T  45910611 tgtacctttccggactatgcaatccggactggattcatgcgttctggagttcgaaattcggactgcaccagtacagaaactgtgttcattttctgactat 45910512  T
Q  286 gcttggcattgttttcagatatggttgttccgg 318  Q
    || | ||| ||||||||||||||||||||||||    
T  45910511 gcct-gcactgttttcagatatggttgttccgg 45910480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 89 - 324
Target Start/End: Complemental strand, 44713400 - 44713162
Alignment:
Q  89 acatcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccatt----ttttaggcgatttcctttggatcacgtcatatgatctgta 184  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||| |||||||    |||||||||||||||||| |||||||||||||||||||||    
T  44713400 acatcatcattttcggttgaatgcaaaggtaatgtgtatataaacctttccccattcgttttttaggcgatttccttttgatcacgtcatatgatctgta 44713301  T
Q  185 ctgatccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgttcatattatgacta 284  Q
    |||  || ||||||| |||  |||| |||||  |||||||| ||||||| || ||| |  ||| |||| ||||||| ||||||||||||| || ||||||    
T  44713300 ctgtacctttccggactatgcaatctggactagattcatgcattccggagttagaaattaggactgcaccagtacaaaaactgtgttcattttctgacta 44713201  T
Q  285 tgcttggcattgttttcagatatggttgttccggatgatg 324  Q
    ||| | |||||||||||||||||||||||||||| |||||    
T  44713200 tgcct-gcattgttttcagatatggttgttccggttgatg 44713162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 16768063 - 16768008
Alignment:
Q  89 acatcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccatt 144  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||    
T  16768063 acatcatcattctcgactgaatgcaaaggtaatgtgtatataaaccttccctcatt 16768008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 6851423 - 6851379
Alignment:
Q  89 acatcatcattttcgtctgaatgcaaaggtaatgtgtatataaac 133  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  6851423 acatcatcattttcgtctgactgcaaaggtaatgtgtatataaac 6851379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 10548343 - 10548379
Alignment:
Q  89 acatcatcattttcgtctgaatgcaaaggtaatgtgt 125  Q
    ||||||||||||||| |||||||||||||||||||||    
T  10548343 acatcatcattttcgactgaatgcaaaggtaatgtgt 10548379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 6e-59; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 89 - 317
Target Start/End: Complemental strand, 41257660 - 41257429
Alignment:
Q  89 acatcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccatt----ttttaggcgatttcctttggatcacgtcatatgatctgta 184  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    |||||||||||||||||| |||||||||||||||| ||||    
T  41257660 acatcatcattttcgactgaatgcaaaggtaatgtgtatataaacctttccccattcgttttttaggcgatttccttttgatcacgtcatatgatatgta 41257561  T
Q  185 ctgatccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgttcatattatgacta 284  Q
    |||  || || |||| |||  |||| ||| || |||||||||||| |||||||||| |||||| |||| |||||||||||||||||| || || ||||||    
T  41257560 ctgtaccttttcggactatgcaatctggattggattcatgcgttctggatttcgaaatccggactgcaccagtacagaaactgtgtttattttctgacta 41257461  T
Q  285 tgcttggcattgttttcagatatggttgttccg 317  Q
    ||| | ||| |||||||||||||||||||||||    
T  41257460 tgcct-gcactgttttcagatatggttgttccg 41257429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 89 - 324
Target Start/End: Original strand, 19215464 - 19215701
Alignment:
Q  89 acatcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccatt----ttttaggcgatttcctttggatcacgtcatatgatctgta 184  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    |||||||| |||| |||| |||||||||||||||||||||    
T  19215464 acatcatcattttcgactgaatgcaaaggtaatgtgtatataaaccttcccccattagttttttaggcaattttcttttgatcacgtcatatgatctgta 19215563  T
Q  185 ctgatccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgttcatattatgacta 284  Q
     ||  || ||| ||| |||  ||||||||||| |||||||||||||||| |||||| || | | |||| |||||||||||||||| |||| || ||||||    
T  19215564 ttgtacctttcaggactatgcaatccggactggattcatgcgttccggagttcgaaatctgaactgcatcagtacagaaactgtg-tcattttctgacta 19215662  T
Q  285 tgcttggcattgttttcagatatggttgttccggatgatg 324  Q
    ||| | ||| ||||||||||| |||||||||||| |||||    
T  19215663 tgcct-gcactgttttcagatgtggttgttccggttgatg 19215701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 324
Target Start/End: Original strand, 15889272 - 15889342
Alignment:
Q  254 cagtacagaaactgtgttcatattatgactatgcttggcattgttttcagatatggttgttccggatgatg 324  Q
    ||||||||||||| ||||||| || |||||| |||||||| ||||||||| |||||||||||||| |||||    
T  15889272 cagtacagaaactatgttcattttctgactaagcttggcactgttttcagttatggttgttccggttgatg 15889342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 6e-59; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 89 - 317
Target Start/End: Original strand, 38619180 - 38619411
Alignment:
Q  89 acatcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccattt----tttaggcgatttcctttggatcacgtcatatgatctgta 184  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||    ||||||||||||||||| |||||||||||||||||||||    
T  38619180 acatcatcattttcgactgaatgcaaaggtaatgtgtatataaacctttcccaatttgttttttaggcgatttccttttgatcacgtcatatgatctgta 38619279  T
Q  185 ctgatccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgttcatattatgacta 284  Q
    |||  || ||||||| |||  ||||||||||| |||||||||||  |||||||||| ||  || |||| ||||||||||||||||||||| || ||||||    
T  38619280 ctgtacctttccggactatgcaatccggactggattcatgcgttatggatttcgaaatctagactgcaccagtacagaaactgtgttcattttttgacta 38619379  T
Q  285 tgcttggcattgttttcagatatggttgttccg 317  Q
    ||| | | | |||||||||||||||||||||||    
T  38619380 tgcct-gtactgttttcagatatggttgttccg 38619411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 89 - 324
Target Start/End: Complemental strand, 17312829 - 17312591
Alignment:
Q  89 acatcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttccccca----ttttttaggcgatttcctttggatcacgtcatatgatctgta 184  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    |||||||||||||||||||| |||||||||||||||| ||||    
T  17312829 acatcatcattttcgactgaatgcaaaggtaatgtgtatataaaccttctcccattcgttttttaggcgatttccttttgatcacgtcatatgatttgta 17312730  T
Q  185 ctgatccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgttcatattatgacta 284  Q
    ||   ||| ||| || | | ||||||| ||||  |||| | ||| | ||||||||| |||||| |||| ||||||||||||||||||||| || ||||||    
T  17312729 ctctaccggtccagactctgaaatccgaactgggttcacgtgtttcagatttcgaaatccggactgcaccagtacagaaactgtgttcattttctgacta 17312630  T
Q  285 tgcttggcattgttttcagatatggttgttccggatgatg 324  Q
    ||||| ||| ||||||||||||||||||||| || |||||    
T  17312629 tgctt-gcactgttttcagatatggttgttctggttgatg 17312591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 316
Target Start/End: Original strand, 9635368 - 9635599
Alignment:
Q  89 acatcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccatt----ttttaggcgatttcctttggatcacgtcatatgatctgta 184  Q
    |||||||||||||| ||||| ||||||| ||||||||||||||||||||||  |||    ||||||||| |||||||| |||||||||||||||||||||    
T  9635368 acatcatcattttcatctgagtgcaaagataatgtgtatataaaccttcccttatttgaattttaggcgctttccttttgatcacgtcatatgatctgta 9635467  T
Q  185 ctgatccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgttcatattatgacta 284  Q
    |||   |  | || || || ||||| ||||||||||||||| || | |||||   | |||| |   || ||||||| |||||||| |||| || ||| |     
T  9635468 ctggagcaatacgaaaaataaaatctggactgcattcatgcatttcagattttttaatccgaacaacaccagtacaaaaactgtgctcattttctgagtc 9635567  T
Q  285 tgcttggcattgttttcagatatggttgttcc 316  Q
    ||||| ||| ||||||||| ||||||||||||    
T  9635568 tgcttcgcactgttttcagttatggttgttcc 9635599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 19991675 - 19991628
Alignment:
Q  89 acatcatcattttcgtctgaatgcaaaggtaatgtgtatataaacctt 136  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||    
T  19991675 acatcatcattttcgaatgaatgcaaaggtaatgtgtatataaacctt 19991628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 26262701 - 26262739
Alignment:
Q  93 catcattttcgtctgaatgcaaaggtaatgtgtatataa 131  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  26262701 catcatttttgtctgaatgcaaaggtaatgtgtatataa 26262739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 89 - 324
Target Start/End: Original strand, 25761173 - 25761411
Alignment:
Q  89 acatcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccatt----ttttaggcgatttcctttggatcacgtcatatgatctgta 184  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||| |||||||    |||||||| |||| |||| |||||||||||||||| ||||    
T  25761173 acatcatcatttttgactgaatgcaaaggtaatgtgtatataaacctttccccattgattttttaggctattttcttttgatcacgtcatatgatatgta 25761272  T
Q  185 ctgatccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgttcatattatgacta 284  Q
    |||  || ||||||| |||  ||||| ||||| |||||||||||||||| |||||| |||||| |||| ||||||| ||||||||||||| || ||||||    
T  25761273 ctgtacctttccggactatgcaatccagactggattcatgcgttccggagttcgaaatccggactgcaccagtacaaaaactgtgttcattttctgacta 25761372  T
Q  285 tgcttggcattgttttcagatatggttgttccggatgatg 324  Q
    ||| | ||| |||||||||||||||||||||||| |||||    
T  25761373 tgcct-gcactgttttcagatatggttgttccggttgatg 25761411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 89 - 316
Target Start/End: Complemental strand, 13851018 - 13850788
Alignment:
Q  89 acatcatcattttcgtctgaatgcaaaggtaatgtgtatataaacctt-cccccatt---ttttaggcgatttcctttggatcacgtcatatgatctgta 184  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||   |||||||||||||||||| |||||||||||||||| ||||    
T  13851018 acatcatcattttcgactgaatgcaaaggtaatgtgtatataaacctttcccccattcgtttttaggcgatttccttttgatcacgtcatatgatttgta 13850919  T
Q  185 ctgatccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgttcatattatgacta 284  Q
    |||  || ||||||| |||  |||||| |||| |||||||  ||||||| |||| | |||||| |||| ||||||||||||||||||||| || ||||||    
T  13850918 ctgtacctttccggactatgcaatccgcactggattcatggtttccggagttcgtaatccggactgcaccagtacagaaactgtgttcattttctgacta 13850819  T
Q  285 tgcttggcattgttttcagatatggttgttcc 316  Q
    ||| | |||||||||| |||||||||||||||    
T  13850818 tgcat-gcattgtttttagatatggttgttcc 13850788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 89 - 324
Target Start/End: Original strand, 38965581 - 38965819
Alignment:
Q  89 acatcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccatt----ttttaggcgatttcctttggatcacgtcatatgatctgta 184  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||| |||||    ||||||||||||| |||| ||||| |||||||||| ||||    
T  38965581 acatcatcattttcgtctgaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcatgtcatatgatatgta 38965680  T
Q  185 ctgatccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgttcatattatgacta 284  Q
    |||| | ||||||||| |  || |||||||| ||||||||| ||| |||||||||| |||||| | || ||||||||||||||||||||| || ||||||    
T  38965681 ctga-ctgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatccggactacaccagtacagaaactgtgttcattttctgacta 38965779  T
Q  285 tgcttggcattgttttcagatatggttgttccggatgatg 324  Q
    ||||||||| || |||||  |||||||||||||| |||||    
T  38965780 tgcttggcactgatttcaattatggttgttccggttgatg 38965819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 89 - 308
Target Start/End: Complemental strand, 20236476 - 20236255
Alignment:
Q  89 acatcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccat---tttttaggcgatttcctttggatcacgtcatatgatctgtac 185  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||   ||||||||||||||||||| |||||||||||||||| ||||     
T  20236476 acatcatcattttcgactgaatgctaaggtaatgtgtatataaaccttccccgatttgtttttaggcgatttccttttgatcacgtcatatgatatgtaa 20236377  T
Q  186 tgatccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgttcatattatgactat 285  Q
    |  || | |||||| | | ||||||| |||| ||||||||||||||||||||||| |||||| |||| ||||||| ||| | ||||||| || |||||||    
T  20236376 tcttcagatccggactttgaaatccgaactggattcatgcgttccggatttcgaaatccggactgcaccagtacataaattatgttcattttctgactat 20236277  T
Q  286 gcttggcattgttttcagatatg 308  Q
    || | ||| ||||||||||||||    
T  20236276 gcct-gcactgttttcagatatg 20236255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 89 - 186
Target Start/End: Complemental strand, 23352292 - 23352191
Alignment:
Q  89 acatcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttccccca----ttttttaggcgatttcctttggatcacgtcatatgatctgta 184  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||    |||||||||| ||||||||| |||||||||||||||| ||||    
T  23352292 acatcatcattttcgactgaatgcaaaggtaatgtgtatataaacctttccccattcgttttttaggcaatttccttttgatcacgtcatatgatatgta 23352193  T
Q  185 ct 186  Q
    ||    
T  23352192 ct 23352191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 157 - 317
Target Start/End: Complemental strand, 34834127 - 34833968
Alignment:
Q  157 tcctttggatcacgtcatatgatctgtactgatccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacag 256  Q
    |||||| |||||||||||||||| ||||| |  || || |||| |||  ||| ||||||| |||||||| ||||  | | |||| ||| || |||| |||    
T  34834127 tccttttgatcacgtcatatgatatgtaccgtaccttttcggactatgcaattcggactggattcatgctttccaaagtccgaaatccagactgcaccag 34834028  T
Q  257 tacagaaactgtgttcatattatgactatgcttggcattgttttcagatatggttgttccg 317  Q
    |||||||||||||||||| || ||||||| | | ||| |||||||||||||||||||||||    
T  34834027 tacagaaactgtgttcattttctgactatacat-gcactgttttcagatatggttgttccg 34833968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 9e-58; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 89 - 316
Target Start/End: Complemental strand, 18460070 - 18459835
Alignment:
Q  89 acatcatcattttcgtctgaatgcaaaggtaatgtgtatataa---accttcccccattt-----tttaggcgatttcctttggatcacgtcatatgatc 180  Q
    ||||||||||||||| |||||||||||||||||||||||||||   ||||||||||||||     ||| ||||||||||||| |||||||||||||||||    
T  18460070 acatcatcattttcgactgaatgcaaaggtaatgtgtatataataaaccttcccccatttgttttttttggcgatttccttttgatcacgtcatatgatc 18459971  T
Q  181 tgtactgatccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgttcatattatg 280  Q
    ||||||||  ||||| ||||| | |||||||||||||||||||||||||||||||| ||||| ||||| | | |||| |||||||||||||||| || ||    
T  18459970 tgtactgaaacgttctggaatttcaaatccggactgcattcatgcgttccggattttgaatttcggatagaaccagtgcagaaactgtgttcatcttttg 18459871  T
Q  281 actatgcttggcattgttttcagatatggttgttcc 316  Q
    ||| ||||| ||| || ||||||  |||||||||||    
T  18459870 actctgcttcgcactgctttcagtcatggttgttcc 18459835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 24133434 - 24133379
Alignment:
Q  89 acatcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccatt 144  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||    
T  24133434 acatcatcattttcgactgaattcaaaggtaatgtgtatataaaccttccctcatt 24133379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 5e-44; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 89 - 316
Target Start/End: Complemental strand, 6162350 - 6162119
Alignment:
Q  89 acatcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccatt----ttttaggcgatttcctttggatcacgtcatatgatctgta 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| | |    ||||||||||||  |||| ||||||||  |||||| |  |    
T  6162350 acatcatcattttcgtctgaatgcaaaggtaatgtgtatataaacctttccctagtcgatttttaggcgattaacttttgatcacgttgtatgatattca 6162251  T
Q  185 ctgatccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgttcatattatgacta 284  Q
     ||  | |||||||||| |||||||||| |||||||||||||||| |||||||| ||||||||  ||| |||| |||||||||||||||| || |||||     
T  6162250 ttgtactgttccggaatgttaaatccggtctgcattcatgcgttctggatttcggattccggagagcaccagtgcagaaactgtgttcattttctgactc 6162151  T
Q  285 tgcttggcattgttttcagatatggttgttcc 316  Q
    | ||| ||| |||||||||  |||||||||||    
T  6162150 tacttcgcactgttttcagtcatggttgttcc 6162119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 89 - 314
Target Start/End: Complemental strand, 52972747 - 52972518
Alignment:
Q  89 acatcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttccccca-----ttttttaggcgatttcctttggatcacgtcatatgatctgt 183  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||      |||||||||||||||| ||| |||||||||||||||| |||    
T  52972747 acatcatcattttcgactgaatgcaaaggtaatgtgtgtataaaccttccccccattcgttttttaggcgatttctttttgatcacgtcatatgatttgt 52972648  T
Q  184 actgatccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgttcatattatgact 283  Q
    |||   |   | |||| | | ||||| |||||| ||||||||||||||||||| ||| || ||| |||| || |||||||||||||||||| || |||||    
T  52972647 actctacatgttcggactgtaaaatctggactggattcatgcgttccggattttgaaatctggactgcaccaatacagaaactgtgttcattttctgact 52972548  T
Q  284 atgcttggcattgttttcagatatggttgtt 314  Q
    ||| |  ||| ||||| ||||||||||||||    
T  52972547 atg-tctgcactgtttacagatatggttgtt 52972518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 89 - 324
Target Start/End: Original strand, 54586335 - 54586574
Alignment:
Q  89 acatcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttccccca----ttttttaggcgatttcctttggatcacgtcatatgatctgta 184  Q
    ||||||||||||||||||||||||||||||| ||||||||||||  ||| ||||    |||||||||| ||||||||| |||||||||||| ||||||||    
T  54586335 acatcatcattttcgtctgaatgcaaaggtagtgtgtatataaaatttctcccattcgttttttaggcaatttccttttgatcacgtcatacgatctgta 54586434  T
Q  185 ctgatccgttccggaatattaaatccggactgcattcatgcgttccggatttcgaattccggattgcaacagtacagaaactgtgttcatattatgacta 284  Q
    |||      |||| || || || || |||||||||||||  |||  |||||| | | |||| |   || ||||||| ||| | ||||||| || |||||     
T  54586435 ctggatttatccgaaaaataaattcgggactgcattcatatgtttaggatttagtaatccgaacaacaccagtacaaaaattatgttcattttctgactc 54586534  T
Q  285 tgcttggcattgttttcagatatggttgttccggatgatg 324  Q
    ||||| ||||||||||||| |||||||||||||| |||||    
T  54586535 tgcttcgcattgttttcagttatggttgttccggttgatg 54586574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 35309944 - 35309892
Alignment:
Q  93 catcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccattt 145  Q
    ||||||||| ||||||||||||||||||||| |||||||| | |||| |||||    
T  35309944 catcatttttgtctgaatgcaaaggtaatgtttatataaaacctccctcattt 35309892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 11519067 - 11519015
Alignment:
Q  93 catcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccattt 145  Q
    |||||||||||| || ||||||||||||||| |||||||| | |||| |||||    
T  11519067 catcattttcgtatgtatgcaaaggtaatgtttatataaaacctccctcattt 11519015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 3768 times since January 2019
Visitors: 4821