View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0771_high_15 (Length: 227)
Name: NF0771_high_15
Description: NF0771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0771_high_15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 48248144 - 48248376
Alignment:
| Q |
1 |
tcatcactcaacaataaaaactcattttctatcctcaactactatacttgatggctttagaattacaaactctgaattcttctcccacaggagctactac |
100 |
Q |
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| T |
48248144 |
tcatcactcaacaacaaaaactcattttctatcctcaactactatacttgatggctttagaattacaaactcttaattcttctcccacaggagctactac |
48248243 |
T |
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| Q |
101 |
tactat------tccattcccacgtttcaaacaagaagaaaatcaagatcaagaacgtgagtctttggttaaaaagaaacgatcaaaacgaccgc----- |
189 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48248244 |
tactattcctattccattcccacgtttcaaacaagaagaaa------atcaagaacgtgagtctttggttaaaaagaaacgatcaaaacgaccgcgtatt |
48248337 |
T |
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| Q |
190 |
-gtattggtaacccacccactgaagaagaatatcttgct |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
48248338 |
ggtattggtaacccacccactgaagaagaatatcttgct |
48248376 |
T |
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