View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0771_high_16 (Length: 217)
Name: NF0771_high_16
Description: NF0771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0771_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 31410729 - 31410924
Alignment:
| Q |
1 |
atccggttccacaatgggaaaactgtacaaaacacaaacaggacaagaataagggaaacttaatcaacttgaaacnnnnnnngcactttacaacaaactt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
31410729 |
atccggttccacaatgggaaaactgtacaaaacacaaacaggacaagaataaaggaaacttaatcaacttgaaacaaaaaatgcactttacaacaaactt |
31410828 |
T |
|
| Q |
101 |
tagaaaatcggccatgtacaatggccaagaggatctcactaaaaccacgattcagaatagaacgataagtgtgtaacagaagcaacatggaaaaat |
196 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31410829 |
tagaaaatcggccatgtacaatggccaagaggatctcactaaaaccacgattcagaatagaataataagtgtgtaacagaagcaacatggaaaaat |
31410924 |
T |
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