View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0771_high_2 (Length: 390)

Name: NF0771_high_2
Description: NF0771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0771_high_2
NF0771_high_2
[»] chr7 (19 HSPs)
chr7 (16-272)||(1087406-1087662)
chr7 (16-273)||(1551861-1552118)
chr7 (17-246)||(1603324-1603553)
chr7 (17-246)||(1558395-1558624)
chr7 (17-118)||(1542601-1542702)
chr7 (16-118)||(1104726-1104828)
chr7 (16-118)||(1104870-1104972)
chr7 (216-295)||(1542728-1542807)
chr7 (216-291)||(1594886-1594961)
chr7 (16-118)||(1594987-1595089)
chr7 (216-295)||(1104621-1104700)
chr7 (182-295)||(1558776-1558889)
chr7 (21-132)||(1542461-1542572)
chr7 (216-276)||(2328148-2328208)
chr7 (17-132)||(1087690-1087805)
chr7 (16-246)||(2328322-2328552)
chr7 (17-78)||(1595171-1595232)
chr7 (16-97)||(2320105-2320186)
chr7 (17-105)||(2336530-2336618)
[»] scaffold0491 (9 HSPs)
scaffold0491 (16-114)||(2450-2548)
scaffold0491 (27-118)||(2749-2840)
scaffold0491 (185-271)||(2835-2921)
scaffold0491 (182-295)||(7495-7608)
scaffold0491 (182-246)||(7279-7343)
scaffold0491 (182-244)||(7351-7413)
scaffold0491 (188-246)||(2550-2608)
scaffold0491 (182-244)||(2616-2678)
scaffold0491 (21-69)||(2311-2359)
[»] chr8 (19 HSPs)
chr8 (16-114)||(18740572-18740670)
chr8 (16-114)||(18745536-18745634)
chr8 (27-118)||(18740943-18741034)
chr8 (27-118)||(18745907-18745998)
chr8 (185-271)||(18741029-18741115)
chr8 (185-271)||(18745993-18746079)
chr8 (182-271)||(18751086-18751175)
chr8 (16-132)||(18750272-18750388)
chr8 (182-246)||(18724786-18724850)
chr8 (182-246)||(18740738-18740802)
chr8 (182-246)||(18745702-18745766)
chr8 (188-246)||(18740672-18740730)
chr8 (182-244)||(18740810-18740872)
chr8 (188-246)||(18745636-18745694)
chr8 (182-244)||(18745774-18745836)
chr8 (182-244)||(18751014-18751076)
chr8 (21-69)||(18740433-18740481)
chr8 (21-69)||(18745397-18745445)
chr8 (182-246)||(18750726-18750790)


Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 272
Target Start/End: Complemental strand, 1087662 - 1087406
Alignment:
Q  16 ctaattgttttagatttcctagtgaagaaggtatctcacccttgaatctattgtcatatagatctaagaaagtgagattttttagcaaccacaattcagg 115  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||    
T  1087662 ctaattgttttagatttcctagtaaagaaggtatctcacctttgaatctattgttagatagatctaagaaagtgagatttttcagcaaccacaattcagg 1087563  T
Q  116 agggatggaaccttgaaataagtttaaagagaagtctaggtagtttaattgtctaagattatgtattgaaggaggtacctggccttcaagagaattggta 215  Q
    |||||||||||| | ||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||    
T  1087562 agggatggaacccttaataaagtttaaagagatgtctaggtagtttaattgtctaagattatgtattgaaggaggtacctggccatcaagaaaattgtta 1087463  T
Q  216 gacaaatcaagatgagtgagcttagagagatgaccaatttcttttgggatagtccca 272  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  1087462 gacaaatcaagataagtgagcttagagagatgaccaatttctttagggatagtccca 1087406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 16 - 273
Target Start/End: Original strand, 1551861 - 1552118
Alignment:
Q  16 ctaattgttttagatttcctagtgaagaaggtatctcacccttgaatctattgtcatatagatctaagaaagtgagattttttagcaaccacaattcagg 115  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||| |||||||||| ||||||    
T  1551861 ctaattgttttagatttcctagtgaagaaggtatctcacctttgaatctattgttagatagatctaagaaagtgagatttttcagcaaccacagttcagg 1551960  T
Q  116 agggatggaaccttgaaataagtttaaagagaagtctaggtagtttaattgtctaagattatgtattgaaggaggtacctggccttcaagagaattggta 215  Q
    |||||||||||||||||  ||||| ||||||| ||||||||| |||||||| |||||||||| |||||||||||||| ||| |||| |||| |||||  |    
T  1551961 agggatggaaccttgaataaagttaaaagagatgtctaggtaatttaattgcctaagattatctattgaaggaggtagctgacctttaagataattgtga 1552060  T
Q  216 gacaaatcaagatgagtgagcttagagagatgaccaatttcttttgggatagtcccat 273  Q
    |||||||||||||||||||| || || || ||||||||||||||||| ||||||||||    
T  1552061 gacaaatcaagatgagtgagtttggaaaggtgaccaatttcttttggaatagtcccat 1552118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 1603553 - 1603324
Alignment:
Q  17 taattgttttagatttcctagtgaagaaggtatctcacccttgaatctattgtcatatagatctaagaaagtgagattttttagcaaccacaattcagga 116  Q
    ||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| | |||||| |||| ||||||||||||||||||||||||||||||||    
T  1603553 taattgtttgagatttcctagggaagaaggtatctcacctttgaatctattgttagatagatataagcaagtgagattttttagcaaccacaattcagga 1603454  T
Q  117 gggatggaaccttgaaataagtttaaagagaagtctaggtagtttaattgtctaagattatgtattgaaggaggtacctggccttcaagagaattggtag 216  Q
    ||||||||||||||||  ||||| ||||||| || ||||||||||||||||||||| || | ||||||||||||||||||||||| ||||||||||| ||    
T  1603453 gggatggaaccttgaataaagttaaaagagatgtttaggtagtttaattgtctaaggttttctattgaaggaggtacctggcctttaagagaattggcag 1603354  T
Q  217 acaaatcaagatgagtgagcttagagagat 246  Q
    |||||||||||||||||||||| |||||||    
T  1603353 acaaatcaagatgagtgagcttggagagat 1603324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 1558395 - 1558624
Alignment:
Q  17 taattgttttagatttcctagtgaagaaggtatctcacccttgaatctattgtcatatagatctaagaaagtgagattttttagcaaccacaattcagga 116  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| | ||||| ||||||||||||||||||||||||||||||||||||||    
T  1558395 taattgtttgagatttcctagtgaagaaggtatctcacctttgaaactattgttagatagacctaagaaagtgagattttttagcaaccacaattcagga 1558494  T
Q  117 gggatggaaccttgaaataagtttaaagagaagtctaggtagtttaattgtctaagattatgtattgaaggaggtacctggccttcaagagaattggtag 216  Q
    ||||||||||| | ||    ||| ||||||| ||||||||||||||||||||||||||| | ||||||||||||||||| ||||| |||| |||||| ||    
T  1558495 gggatggaaccattaatattgttaaaagagatgtctaggtagtttaattgtctaagattttctattgaaggaggtacctagcctttaagataattggcag 1558594  T
Q  217 acaaatcaagatgagtgagcttagagagat 246  Q
    |||||||||||||||||||||| |||||||    
T  1558595 acaaatcaagatgagtgagcttggagagat 1558624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 1542601 - 1542702
Alignment:
Q  17 taattgttttagatttcctagtgaagaaggtatctcacccttgaatctattgtcatatagatctaagaaagtgagattttttagcaaccacaattcagga 116  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||    
T  1542601 taattgttttagatttcctaatgaagaaggtatctcacctttgaatctattgtaagatagatataagaaagtgagattttttagcaaccacaattcagga 1542700  T
Q  117 gg 118  Q
    ||    
T  1542701 gg 1542702  T

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Target: chr7; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 1104828 - 1104726
Alignment:
Q  16 ctaattgttttagatttcctagtgaagaaggtatctcacccttgaatctattgtcatatagatctaagaaagtgagattttttagcaaccacaattcagg 115  Q
    ||||||||||||||||| |||| ||||||||||||||||| |||||| |||||| | |||||| ||||||||||||||||||||||||||||||||||||    
T  1104828 ctaattgttttagattttctagggaagaaggtatctcacctttgaatttattgtaagatagatataagaaagtgagattttttagcaaccacaattcagg 1104729  T
Q  116 agg 118  Q
    |||    
T  1104728 agg 1104726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 1104972 - 1104870
Alignment:
Q  16 ctaattgttttagatttcctagtgaagaaggtatctcacccttgaatctattgtcatatagatctaagaaagtgagattttttagcaaccacaattcagg 115  Q
    |||||||| ||||||||||||| ||||||||||||||||| |||||  |||||| | |||||||||||||||||||||||||||||||||||||||| ||    
T  1104972 ctaattgtgttagatttcctagggaagaaggtatctcacctttgaacatattgtaagatagatctaagaaagtgagattttttagcaaccacaattccgg 1104873  T
Q  116 agg 118  Q
    |||    
T  1104872 agg 1104870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 216 - 295
Target Start/End: Original strand, 1542728 - 1542807
Alignment:
Q  216 gacaaatcaagatgagtgagcttagagagatgaccaatttcttttgggatagtcccatgtagctcaactgaccttataac 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||    
T  1542728 gacaaatcaagatgagtgagcttagagagatgaccaatttcttttgggatagtcccatgtagtttaactgaccatataac 1542807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 216 - 291
Target Start/End: Complemental strand, 1594961 - 1594886
Alignment:
Q  216 gacaaatcaagatgagtgagcttagagagatgaccaatttcttttgggatagtcccatgtagctcaactgacctta 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  1594961 gacaaatcaagatgagtgagcttagagagatgaccaatttcttttgggatagtcccatgtagttcaactgagctta 1594886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 1595089 - 1594987
Alignment:
Q  16 ctaattgttttagatttcctagtgaagaaggtatctcacccttgaatctattgtcatatagatctaagaaagtgagattttttagcaaccacaattcagg 115  Q
    |||||||||| |||||| |||| ||||||| ||||||||| |||||||||||||   ||||||||||||||||||||||||||||||||||||| |||||    
T  1595089 ctaattgtttgagattttctagggaagaagatatctcacctttgaatctattgtatgatagatctaagaaagtgagattttttagcaaccacaactcagg 1594990  T
Q  116 agg 118  Q
    |||    
T  1594989 agg 1594987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 216 - 295
Target Start/End: Complemental strand, 1104700 - 1104621
Alignment:
Q  216 gacaaatcaagatgagtgagcttagagagatgaccaatttcttttgggatagtcccatgtagctcaactgaccttataac 295  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||    
T  1104700 gacaaatcaagataagtgagcttagagagatgaccaatttctttagggatagtcccatgtagttcaactgagcttataac 1104621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 182 - 295
Target Start/End: Original strand, 1558776 - 1558889
Alignment:
Q  182 tgaaggaggtacctggccttcaagagaattggtagacaaatcaagatgagtgagcttagagagatgaccaatttcttttgggatagtcccatgtagctca 281  Q
    |||| |||||||||| ||||||| | ||||| |||||| |||||||| ||||||||||||||||||||||||||| ||||| |||||||| | ||| |||    
T  1558776 tgaatgaggtacctgaccttcaatataattgttagacagatcaagataagtgagcttagagagatgaccaatttcatttggcatagtcccttctagttca 1558875  T
Q  282 actgaccttataac 295  Q
     |||||||||||||    
T  1558876 gctgaccttataac 1558889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 1542461 - 1542572
Alignment:
Q  21 tgttttagatttcctagtgaagaaggtatctcacccttgaatctattgtcatatagatctaagaaagtgagattttttagcaaccacaattcaggaggga 120  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||| | |||||||||| | |||||||||||| |  |||| ||| ||| |||| |    
T  1542461 tgtttgagatttcctagtgaagaaggtatctcacctttgaatctattgtaagatagatctaatatagtgagatttttcaagaaccccaactcaagaggaa 1542560  T
Q  121 tggaaccttgaa 132  Q
    ||||||||||||    
T  1542561 tggaaccttgaa 1542572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 2328208 - 2328148
Alignment:
Q  216 gacaaatcaagatgagtgagcttagagagatgaccaatttcttttgggatagtcccatgta 276  Q
    |||||||| |||||||||||||| |||||| ||||||||||||||||||||||||| ||||    
T  2328208 gacaaatcgagatgagtgagcttggagagaagaccaatttcttttgggatagtcccttgta 2328148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 1087805 - 1087690
Alignment:
Q  17 taattgttttagatttcctagtgaagaaggtatctcacccttgaatctattgtcatatagatctaagaaagtgagattttttagcaaccacaattcagga 116  Q
    ||||||||| ||||||| ||||||||||||||||||||| || |||||||| | | ||||||||||   |||||||||||| |  ||||  || ||| ||    
T  1087805 taattgtttgagatttcttagtgaagaaggtatctcacctttaaatctattattagatagatctaatctagtgagatttttcaagaaccctaactcaaga 1087706  T
Q  117 gggatggaaccttgaa 132  Q
    || |||||||||||||    
T  1087705 ggaatggaaccttgaa 1087690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 2328552 - 2328322
Alignment:
Q  16 ctaattgttttagatttcctagtgaagaaggtatctcacccttgaatctattgtcatatagatctaagaaagtgagattttttagcaaccacaattcagg 115  Q
    |||||| ||| || |||||||| |||| |||||||||||| |||| |||||| | | ||| ||||||   |||||||||||| || ||||  |||||| |    
T  2328552 ctaattttttgaggtttcctagggaaggaggtatctcacctttgattctattcttagataaatctaatctagtgagatttttcaggaaccctaattcaag 2328453  T
Q  116 agggatggaaccttgaaataagtttaaagagaagtctaggtagtttaattgtctaagattatgtattgaaggaggtacctggccttcaagagaattggta 215  Q
     || |||||||||||||   || ||   |||| || |||||| | ||||||| |||||||   |||||||||||||| ||  ||  ||||| ||||  |     
T  2328452 tggaatggaaccttgaatgtaggtttctgagatgtgtaggtactctaattgtttaagatttcctattgaaggaggtatctcaccgccaagaaaattattg 2328353  T
Q  216 gacaaatcaagatgagtgagcttagagagat 246  Q
    |||||||| ||||||||||| || |||||||    
T  2328352 gacaaatcgagatgagtgaggttggagagat 2328322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 1595232 - 1595171
Alignment:
Q  17 taattgttttagatttcctagtgaagaaggtatctcacccttgaatctattgtcatatagat 78  Q
    ||||||| ||||||||||||  ||||||||||||||||| ||||||||||||| | ||||||    
T  1595232 taattgtgttagatttcctatggaagaaggtatctcacctttgaatctattgttagatagat 1595171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 2320186 - 2320105
Alignment:
Q  16 ctaattgttttagatttcctagtgaagaaggtatctcacccttgaatctattgtcatatagatctaagaaagtgagattttt 97  Q
    |||||||||| |||||||| |||||||||||||| | ||| |||| ||||||||   ||| ||||||  |||||||||||||    
T  2320186 ctaattgtttgagatttcccagtgaagaaggtatttgacctttgattctattgtgggataaatctaatgaagtgagattttt 2320105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 2336618 - 2336530
Alignment:
Q  17 taattgttttagatttcctagtgaagaaggtatctcacccttgaatctattgtcatatagatctaagaaagtgagattttttagcaacc 105  Q
    ||||||||| ||||||||||   ||| |||||||||||| |||| |||||| | | |||||| |||   ||||||||||||||| ||||    
T  2336618 taattgtttgagatttcctatcaaaggaggtatctcacctttgattctatttttagatagatataatctagtgagattttttaggaacc 2336530  T

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Target: scaffold0491 (Bit Score: 83; Significance: 3e-39; HSPs: 9)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 2450 - 2548
Alignment:
Q  16 ctaattgttttagatttcctagtgaagaaggtatctcacccttgaatctattgtcatatagatctaagaaagtgagattttttagcaaccacaattcag 114  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  2450 ctaattgttttagatttcctagtgaagaaggtatctgacctttgaatctattgtaagatagatctaagaaagtgagattttttagcaaccacaattcag 2548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 27 - 118
Target Start/End: Original strand, 2749 - 2840
Alignment:
Q  27 agatttcctagtgaagaaggtatctcacccttgaatctattgtcatatagatctaagaaagtgagattttttagcaaccacaattcaggagg 118  Q
    ||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  2749 agatttcctagtgaagaaggtatctcacctttgaatctattgttaaatagatctaagaaagtgagattttttagcaaccacaattcaggagg 2840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 185 - 271
Target Start/End: Original strand, 2835 - 2921
Alignment:
Q  185 aggaggtacctggccttcaagagaattggtagacaaatcaagatgagtgagcttagagagatgaccaatttcttttgggatagtccc 271  Q
    |||||||| ||| ||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  2835 aggaggtagctgaccttcaagaaaattggcagacaaatcaagatgagtgagtttagagagatgaccaatttcttttgagatagtccc 2921  T

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Target: scaffold0491; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 182 - 295
Target Start/End: Original strand, 7495 - 7608
Alignment:
Q  182 tgaaggaggtacctggccttcaagagaattggtagacaaatcaagatgagtgagcttagagagatgaccaatttcttttgggatagtcccatgtagctca 281  Q
    ||||||||||||| | |||  ||||  |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| | |    
T  7495 tgaaggaggtaccagacctataagaagattgttagacaaatcaagatgagtgagcttggagagatgaccaatttcttttgggatagtcccatatagatta 7594  T
Q  282 actgaccttataac 295  Q
    | || |||||||||    
T  7595 aatggccttataac 7608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 7279 - 7343
Alignment:
Q  182 tgaaggaggtacctggccttcaagagaattggtagacaaatcaagatgagtgagcttagagagat 246  Q
    ||||||||||||||| || |||||| |||||  |||||||||||||||||||||||| |||||||    
T  7279 tgaaggaggtacctgaccatcaagaaaattgacagacaaatcaagatgagtgagcttggagagat 7343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 7351 - 7413
Alignment:
Q  182 tgaaggaggtacctggccttcaagagaattggtagacaaatcaagatgagtgagcttagagag 244  Q
    ||||||||||||||| ||| |||||  |||| |||||||||||||||||||||| || |||||    
T  7351 tgaaggaggtacctgacctgcaagaagattgttagacaaatcaagatgagtgagtttggagag 7413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 2550 - 2608
Alignment:
Q  188 aggtacctggccttcaagagaattggtagacaaatcaagatgagtgagcttagagagat 246  Q
    ||||| ||| |||| |||| |||||| ||||||||||||||||||||| || |||||||    
T  2550 aggtagctgacctttaagaaaattggcagacaaatcaagatgagtgagtttggagagat 2608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 2616 - 2678
Alignment:
Q  182 tgaaggaggtacctggccttcaagagaattggtagacaaatcaagatgagtgagcttagagag 244  Q
    ||||||||||| ||| |||| ||||  ||||| ||||||||||||||||||||| || |||||    
T  2616 tgaaggaggtagctgacctttaagaatattggcagacaaatcaagatgagtgagtttggagag 2678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 2311 - 2359
Alignment:
Q  21 tgttttagatttcctagtgaagaaggtatctcacccttgaatctattgt 69  Q
    ||||| |||||||| | |||||||||||||||||| |||||| ||||||    
T  2311 tgtttgagatttcccaatgaagaaggtatctcacctttgaatatattgt 2359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 18740572 - 18740670
Alignment:
Q  16 ctaattgttttagatttcctagtgaagaaggtatctcacccttgaatctattgtcatatagatctaagaaagtgagattttttagcaaccacaattcag 114  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  18740572 ctaattgttttagatttcctagtgaagaaggtatctgacctttgaatctattgtaagatagatctaagaaagtgagattttttagcaaccacaattcag 18740670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 18745536 - 18745634
Alignment:
Q  16 ctaattgttttagatttcctagtgaagaaggtatctcacccttgaatctattgtcatatagatctaagaaagtgagattttttagcaaccacaattcag 114  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  18745536 ctaattgttttagatttcctagtgaagaaggtatctgacctttgaatctattgtaagatagatctaagaaagtgagattttttagcaaccacaattcag 18745634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 27 - 118
Target Start/End: Original strand, 18740943 - 18741034
Alignment:
Q  27 agatttcctagtgaagaaggtatctcacccttgaatctattgtcatatagatctaagaaagtgagattttttagcaaccacaattcaggagg 118  Q
    ||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  18740943 agatttcctagtgaagaaggtatctcacctttgaatctattgttaaatagatctaagaaagtgagattttttagcaaccacaattcaggagg 18741034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 27 - 118
Target Start/End: Original strand, 18745907 - 18745998
Alignment:
Q  27 agatttcctagtgaagaaggtatctcacccttgaatctattgtcatatagatctaagaaagtgagattttttagcaaccacaattcaggagg 118  Q
    ||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  18745907 agatttcctagtgaagaaggtatctcacctttgaatctattgttaaatagatctaagaaagtgagattttttagcaaccacaattcaggagg 18745998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 185 - 271
Target Start/End: Original strand, 18741029 - 18741115
Alignment:
Q  185 aggaggtacctggccttcaagagaattggtagacaaatcaagatgagtgagcttagagagatgaccaatttcttttgggatagtccc 271  Q
    |||||||| ||| ||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  18741029 aggaggtagctgaccttcaagaaaattggcagacaaatcaagatgagtgagtttagagagatgaccaatttcttttgagatagtccc 18741115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 185 - 271
Target Start/End: Original strand, 18745993 - 18746079
Alignment:
Q  185 aggaggtacctggccttcaagagaattggtagacaaatcaagatgagtgagcttagagagatgaccaatttcttttgggatagtccc 271  Q
    |||||||| ||| ||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  18745993 aggaggtagctgaccttcaagaaaattggcagacaaatcaagatgagtgagtttagagagatgaccaatttcttttgagatagtccc 18746079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 182 - 271
Target Start/End: Original strand, 18751086 - 18751175
Alignment:
Q  182 tgaaggaggtacctggccttcaagagaattggtagacaaatcaagatgagtgagcttagagagatgaccaatttcttttgggatagtccc 271  Q
    |||| ||||||||||||||| ||||  ||||  |||||  |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  18751086 tgaatgaggtacctggccttgaagattattgtaagacatgtcaagatgagtgagtttagagagatgaccaatttcttttgggatagtccc 18751175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 18750272 - 18750388
Alignment:
Q  16 ctaattgttttagatttcctagtgaagaaggtatctcacccttgaatctattgtcatatagatctaagaaagtgagattttttagcaaccacaattcagg 115  Q
    |||||||||| |||||||||||||||| |||||||||||| |||| |||||||| | |||||  |||   |||||| ||||||||||||| |||    ||    
T  18750272 ctaattgtttcagatttcctagtgaaggaggtatctcacctttgattctattgtgagatagacgtaatgtagtgaggttttttagcaaccccaacctggg 18750371  T
Q  116 agggatggaaccttgaa 132  Q
    |||||||||||||||||    
T  18750372 agggatggaaccttgaa 18750388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 18724786 - 18724850
Alignment:
Q  182 tgaaggaggtacctggccttcaagagaattggtagacaaatcaagatgagtgagcttagagagat 246  Q
    ||||||||||||||| || |||||| |||||  |||||||||||||||||||||||| |||||||    
T  18724786 tgaaggaggtacctgaccatcaagaaaattgacagacaaatcaagatgagtgagcttggagagat 18724850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 18740738 - 18740802
Alignment:
Q  182 tgaaggaggtacctggccttcaagagaattggtagacaaatcaagatgagtgagcttagagagat 246  Q
    ||||||||||| ||| |||| |||| |||||| ||||||||||||||||||||| || |||||||    
T  18740738 tgaaggaggtagctgacctttaagaaaattggcagacaaatcaagatgagtgagtttggagagat 18740802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 18745702 - 18745766
Alignment:
Q  182 tgaaggaggtacctggccttcaagagaattggtagacaaatcaagatgagtgagcttagagagat 246  Q
    ||||||||||| ||| |||| |||| |||||| ||||||||||||||||||||| || |||||||    
T  18745702 tgaaggaggtagctgacctttaagaaaattggcagacaaatcaagatgagtgagtttggagagat 18745766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 18740672 - 18740730
Alignment:
Q  188 aggtacctggccttcaagagaattggtagacaaatcaagatgagtgagcttagagagat 246  Q
    ||||| ||| |||| |||| |||||| ||||||||||||||||||||| || |||||||    
T  18740672 aggtagctgacctttaagaaaattggcagacaaatcaagatgagtgagtttggagagat 18740730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 18740810 - 18740872
Alignment:
Q  182 tgaaggaggtacctggccttcaagagaattggtagacaaatcaagatgagtgagcttagagag 244  Q
    ||||||||||| ||| |||| ||||  ||||| ||||||||||||||||||||| || |||||    
T  18740810 tgaaggaggtagctgacctttaagaatattggcagacaaatcaagatgagtgagtttggagag 18740872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 18745636 - 18745694
Alignment:
Q  188 aggtacctggccttcaagagaattggtagacaaatcaagatgagtgagcttagagagat 246  Q
    ||||| ||| |||| |||| |||||| ||||||||||||||||||||| || |||||||    
T  18745636 aggtagctgacctttaagaaaattggcagacaaatcaagatgagtgagtttggagagat 18745694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 18745774 - 18745836
Alignment:
Q  182 tgaaggaggtacctggccttcaagagaattggtagacaaatcaagatgagtgagcttagagag 244  Q
    ||||||||||| ||| |||| ||||  ||||| ||||||||||||||||||||| || |||||    
T  18745774 tgaaggaggtagctgacctttaagaatattggcagacaaatcaagatgagtgagtttggagag 18745836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 18751014 - 18751076
Alignment:
Q  182 tgaaggaggtacctggccttcaagagaattggtagacaaatcaagatgagtgagcttagagag 244  Q
    |||| |||||||||| |||| ||||  ||||| ||||||||||||||||||||| || |||||    
T  18751014 tgaatgaggtacctgacctttaagaatattggcagacaaatcaagatgagtgagtttggagag 18751076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 18740433 - 18740481
Alignment:
Q  21 tgttttagatttcctagtgaagaaggtatctcacccttgaatctattgt 69  Q
    ||||| |||||||| | |||||||||||||||||| |||||| ||||||    
T  18740433 tgtttgagatttcccaatgaagaaggtatctcacctttgaatatattgt 18740481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 18745397 - 18745445
Alignment:
Q  21 tgttttagatttcctagtgaagaaggtatctcacccttgaatctattgt 69  Q
    ||||| |||||||| | |||||||||||||||||| |||||| ||||||    
T  18745397 tgtttgagatttcccaatgaagaaggtatctcacctttgaatatattgt 18745445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 18750726 - 18750790
Alignment:
Q  182 tgaaggaggtacctggccttcaagagaattggtagacaaatcaagatgagtgagcttagagagat 246  Q
    |||| |||||||||| |||| ||||  ||||  ||||||||||||||||||||| || |||||||    
T  18750726 tgaatgaggtacctgacctttaagaagattgacagacaaatcaagatgagtgagtttggagagat 18750790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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