View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0771_low_11 (Length: 328)
Name: NF0771_low_11
Description: NF0771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0771_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 88 - 189
Target Start/End: Original strand, 1126261 - 1126362
Alignment:
| Q |
88 |
gatgttgtttttctataaccatgtgcctcctagccgtctcgtgatgcgtgcctctcttttctttcccaatcatgaatcggctcctgtgtgccaaaacgtg |
187 |
Q |
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| T |
1126261 |
gatgttgtttttctataactatgtgcctcctagccgtctcgtgatgcgtgcctctcttttctttcccaatcatgaatcggctcctgtgtgccaaaacgtg |
1126360 |
T |
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| Q |
188 |
aa |
189 |
Q |
| |
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|| |
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| T |
1126361 |
aa |
1126362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 88 - 189
Target Start/End: Original strand, 30275189 - 30275290
Alignment:
| Q |
88 |
gatgttgtttttctataaccatgtgcctcctagccgtctcgtgatgcgtgcctctcttttctttcccaatcatgaatcggctcctgtgtgccaaaacgtg |
187 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30275189 |
gatgttgtttttctataaccatgtgcctcctagccgtctcgtgatgcgtgcctctcttttctttcccaatcatgattcggctcctgtgtgccaaaacgtg |
30275288 |
T |
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| Q |
188 |
aa |
189 |
Q |
| |
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|| |
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| T |
30275289 |
aa |
30275290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 88 - 165
Target Start/End: Original strand, 38005715 - 38005792
Alignment:
| Q |
88 |
gatgttgtttttctataaccatgtgcctcctagccgtctcgtgatgcgtgcctctcttttctttcccaatcatgaatc |
165 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38005715 |
gatgttgtttttctataaccatgtgcctcctagccgtcttgtgatgcgtgcctctcttttctttcccaatcatgaatc |
38005792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 88 - 165
Target Start/End: Original strand, 19865018 - 19865095
Alignment:
| Q |
88 |
gatgttgtttttctataaccatgtgcctcctagccgtctcgtgatgcgtgcctctcttttctttcccaatcatgaatc |
165 |
Q |
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|||||||||||||||||||||||||||||| || | |||||||||||||||||||||||| |||||||||| |||||| |
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| T |
19865018 |
gatgttgtttttctataaccatgtgcctcccagtcatctcgtgatgcgtgcctctcttttatttcccaatcgtgaatc |
19865095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 88 - 165
Target Start/End: Original strand, 19860054 - 19860129
Alignment:
| Q |
88 |
gatgttgtttttctataaccatgtgcctcctagccgtctcgtgatgcgtgcctctcttttctttcccaatcatgaatc |
165 |
Q |
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||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||| |||||||||| |||||| |
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| T |
19860054 |
gatgttgtttttctataaccacgtgcctcctagccatctcgtgatgcgtgc--ctcttttatttcccaatcgtgaatc |
19860129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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