View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0771_low_12 (Length: 321)
Name: NF0771_low_12
Description: NF0771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0771_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 55670462 - 55670688
Alignment:
| Q |
11 |
ttatacttatattgtgtcggtgcttcgtaggttatactagacacaatcttgaatgactagtaaaaatcttcctcacctgtgatctaaaattcatgatagg |
110 |
Q |
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| T |
55670462 |
ttatacttatattgtgtcggtgcttcgtaggttatactagacacaatcttgagtgactagtaaaaatcttcctcacctgtggtctaaaattcatgatagg |
55670561 |
T |
|
| Q |
111 |
agtattcattttgtagccataaaatggacaaacagatattgaaactgaatcattaatctgacgttaagcagaagcaattgaaggagtaattaataaattt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55670562 |
agtattcattttgtagccataaaatggacaaacagatattgaaactgaatcattaatctgacgttaagcagaagcaattgaaggagtaattaataaattt |
55670661 |
T |
|
| Q |
211 |
acctccaacagaactaatgtcaatact |
237 |
Q |
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||||||||||||||||||||||||||| |
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| T |
55670662 |
acctccaacagaactaatgtcaatact |
55670688 |
T |
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