View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0771_low_19 (Length: 258)

Name: NF0771_low_19
Description: NF0771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0771_low_19
NF0771_low_19
[»] chr4 (3 HSPs)
chr4 (29-230)||(35933680-35933881)
chr4 (176-213)||(30070333-30070370)
chr4 (226-258)||(35933617-35933649)
[»] chr1 (4 HSPs)
chr1 (176-213)||(28870903-28870940)
chr1 (176-213)||(42747733-42747770)
chr1 (176-213)||(32348445-32348482)
chr1 (188-216)||(31795354-31795382)
[»] chr5 (1 HSPs)
chr5 (176-213)||(36909629-36909666)
[»] chr3 (1 HSPs)
chr3 (189-218)||(35682675-35682704)
[»] chr8 (2 HSPs)
chr8 (177-213)||(29861522-29861558)
chr8 (174-210)||(38529628-38529664)


Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 29 - 230
Target Start/End: Complemental strand, 35933881 - 35933680
Alignment:
Q  29 accattatcgttggagtagtcctttacattatattgatacaccagatttcaaatgtaactatcaatattgcagtaagtaattcaattctttttccaataa 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35933881 accattatcgttggagtagtcctttacattatattgatacaccagatttcaaatgtaactatcaatattgcagtaagtaattcaattctttttccaataa 35933782  T
Q  129 cattatttcatatttagtctttgtttgctaaaaagttcctgataacagataagctagtgaattgaatttgtagtgtttggtaaaactagatcaaagagta 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35933781 cattatttcatatttagtctttgtttgctaaaaagttcctgataacagataagctagtgaattgaatttgtagtgtttggtaaaactagatcaaagagta 35933682  T
Q  229 aa 230  Q
    ||    
T  35933681 aa 35933680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 30070370 - 30070333
Alignment:
Q  176 gataagctagtgaattgaatttgtagtgtttggtaaaa 213  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  30070370 gataagctagctaattgaatttgtagtgtttggtaaaa 30070333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 35933649 - 35933617
Alignment:
Q  226 gtaaaattggcaaataaagccttagatttctta 258  Q
    ||||||||||||||||||||||||||| |||||    
T  35933649 gtaaaattggcaaataaagccttagatctctta 35933617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 28870940 - 28870903
Alignment:
Q  176 gataagctagtgaattgaatttgtagtgtttggtaaaa 213  Q
    |||||||||||||||||| |||||||||||||||||||    
T  28870940 gataagctagtgaattgattttgtagtgtttggtaaaa 28870903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 42747770 - 42747733
Alignment:
Q  176 gataagctagtgaattgaatttgtagtgtttggtaaaa 213  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  42747770 gataagctagttaattgaatttgtagtgtttggtaaaa 42747733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 32348482 - 32348445
Alignment:
Q  176 gataagctagtgaattgaatttgtagtgtttggtaaaa 213  Q
    |||||||||||  |||||||||||||||||||||||||    
T  32348482 gataagctagttgattgaatttgtagtgtttggtaaaa 32348445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 31795354 - 31795382
Alignment:
Q  188 aattgaatttgtagtgtttggtaaaacta 216  Q
    |||||||||||||||||||||||||||||    
T  31795354 aattgaatttgtagtgtttggtaaaacta 31795382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 36909666 - 36909629
Alignment:
Q  176 gataagctagtgaattgaatttgtagtgtttggtaaaa 213  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  36909666 gataagctagtgaattgaatttgaagtgtttgataaaa 36909629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 218
Target Start/End: Complemental strand, 35682704 - 35682675
Alignment:
Q  189 attgaatttgtagtgtttggtaaaactaga 218  Q
    ||||||||||||||||||||||||||||||    
T  35682704 attgaatttgtagtgtttggtaaaactaga 35682675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 29861558 - 29861522
Alignment:
Q  177 ataagctagtgaattgaatttgtagtgtttggtaaaa 213  Q
    ||||||||||  |||||||||||||||||||||||||    
T  29861558 ataagctagttgattgaatttgtagtgtttggtaaaa 29861522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 38529628 - 38529664
Alignment:
Q  174 cagataagctagtgaattgaatttgtagtgtttggta 210  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  38529628 cagataagctggtggattgaatttgtagtgtttggta 38529664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 4780 times since January 2019
Visitors: 4839