View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0771_low_20 (Length: 252)
Name: NF0771_low_20
Description: NF0771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0771_low_20 |
 | |
|
| [»] scaffold0171 (3 HSPs) |
| | |
|
| [»] scaffold0181 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 164; Significance: 9e-88; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 6 - 193
Target Start/End: Complemental strand, 24941282 - 24941095
Alignment:
| Q |
6 |
aggagcacagatcaaaggatgagcccttggaagggtcaccgccggtttctcttccatgttaactttcccattaccatcaacattccattcaaaacactga |
105 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||| || || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24941282 |
aggaacacaaatcaaaggatgagcccttggaagggttacagcggatttctcttccatgttaactttcccattaccatcaacattccattcaaaacactga |
24941183 |
T |
|
| Q |
106 |
atcattgcagcaagatttgtgggaacaacttgaagtgctaaagtggcaccagggcaagcccttctaccacttccaaatggcataagtt |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24941182 |
atcattgcagcaagatttgtgggaacaacttgaagtgctaaagtggcaccagggcaagcccttctaccacttccaaatggcataagtt |
24941095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 6 - 193
Target Start/End: Complemental strand, 25169718 - 25169531
Alignment:
| Q |
6 |
aggagcacagatcaaaggatgagcccttggaagggtcaccgccggtttctcttccatgttaactttcccattaccatcaacattccattcaaaacactga |
105 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25169718 |
aggaacacaaatcaaaggatgagcccttggaagggtcacggccggtttctcttccatgtcaactttcccattaccatcaacattccattcaaaacactga |
25169619 |
T |
|
| Q |
106 |
atcattgcagcaagatttgtgggaacaacttgaagtgctaaagtggcaccagggcaagcccttctaccacttccaaatggcataagtt |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
25169618 |
atcattgcagcaagatttgtgggaacaacttgaagtgctaataagtaaccagggcaagcccttctaccagttccaaatggcataagtt |
25169531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 38807610 - 38807673
Alignment:
| Q |
127 |
ggaacaacttgaagtgctaaagtggcaccagggcaagcccttctaccacttccaaatggcataa |
190 |
Q |
| |
|
|||||||||||||||||||| | | ||||||||||||| ||||| ||| |||||||||| |||| |
|
|
| T |
38807610 |
ggaacaacttgaagtgctaatgagacaccagggcaagctcttcttccagttccaaatggtataa |
38807673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 20060 - 19881
Alignment:
| Q |
11 |
cacagatcaaaggatgagcccttggaagggtcaccgccggtttctcttccatgttaactttcccattaccatcaacattccattcaaaacactgaatcat |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||| || |||| |||||| |||||||||||||| ||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
20060 |
cacaaatcaaaggatgagcccttggaaggctcgtggccgctttctcatccatgttaacttttccattaccaccaaccttccattcaaaacactgaatcat |
19961 |
T |
|
| Q |
111 |
tgcagcaagatttgtgggaacaacttgaagtgctaaagtggcaccagggcaagcccttctaccacttccaaatggcataa |
190 |
Q |
| |
|
||| ||||||||||| |||||| | ||||||||||| | ||||||||||||| ||| || ||| ||||||||||||||| |
|
|
| T |
19960 |
tgcggcaagatttgtcggaacagcctgaagtgctaatgaagcaccagggcaagacctccttccagttccaaatggcataa |
19881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 11 - 193
Target Start/End: Complemental strand, 12274 - 12092
Alignment:
| Q |
11 |
cacagatcaaaggatgagcccttggaagggtcaccgccggtttctcttccatgttaactttcccattaccatcaacattccattcaaaacactgaatcat |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||| | ||||||||||||||||||||| | |||| |||| |||| ||||||||||||||||||||||| |
|
|
| T |
12274 |
cacatatcaaaggatgagcccttggaagggtggttgaaggtttctcttccatgttaactgttccatcaccaccaactttccattcaaaacactgaatcat |
12175 |
T |
|
| Q |
111 |
tgcagcaagatttgtgggaacaacttgaagtgctaaagtggcaccagggcaagcccttctaccacttccaaatggcataagtt |
193 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||| | |||||| |||||| ||| ||| ||| |||| ||||||||||||| |
|
|
| T |
12174 |
tgcagcaagatttgttggaacagcttgaagtgctaatgaggcaccggggcaaccccgtcttccagttccgaatggcataagtt |
12092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 25909 - 25730
Alignment:
| Q |
11 |
cacagatcaaaggatgagcccttggaagggtcaccgccggtttctcttccatgttaactttcccattaccatcaacattccattcaaaacactgaatcat |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| || | ||||||||||||| ||||| | ||||||||| |||| ||| |||||||||||||||| || |
|
|
| T |
25909 |
cacacatcaaaggatgagcccttggaagggtcgtcgaagctttctcttccatgctaactgttccattaccaccaaccttcaattcaaaacactgaataat |
25810 |
T |
|
| Q |
111 |
tgcagcaagatttgtgggaacaacttgaagtgctaaagtggcaccagggcaagcccttctaccacttccaaatggcataa |
190 |
Q |
| |
|
|||||||||||||| |||||||||||||| || || | || |||||| ||||| ||||| ||| ||||||||| |||| |
|
|
| T |
25809 |
agcagcaagatttgttggaacaacttgaagcgcgaatgaggtaccaggacaagctcttcttccaaatccaaatggtataa |
25730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 11 - 189
Target Start/End: Original strand, 9573 - 9751
Alignment:
| Q |
11 |
cacagatcaaaggatgagcccttggaagggtcaccgccggtttctcttccatgttaactttcccattaccatcaacattccattcaaaacactgaatcat |
110 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||| || ||||||||||||||||||||| | |||| |||| ||| ||||| | |||||| |||||||| |
|
|
| T |
9573 |
cacacatcaaaggatgagccctaggaagggtcaaagctggtttctcttccatgttaactgttccatcaccactaaccttccaataaaaacattgaatcat |
9672 |
T |
|
| Q |
111 |
tgcagcaagatttgtgggaacaacttgaagtgctaaagtggcaccagggcaagcccttctaccacttccaaatggcata |
189 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||| | |||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
9673 |
tgcagcaagatttgttggaacagcttgaagtgctaatgaagcaccagggcaagcccttcttccagttccaaatggcata |
9751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 36735580 - 36735471
Alignment:
| Q |
19 |
aaaggatgagcccttggaagggtcaccgccggtttctcttccatgttaactttcccattacca---tcaacattccattcaaaacactgaatcattgcag |
115 |
Q |
| |
|
|||||||||||||||| |||||||| | | |||||||||||||| ||||| ||||||||||| | ||| |||||||||||||| |||||||| |||| |
|
|
| T |
36735580 |
aaaggatgagcccttgaaagggtcaacccaggtttctcttccatattaacaatcccattaccacctttaaccttccattcaaaacattgaatcatagcag |
36735481 |
T |
|
| Q |
116 |
caagatttgt |
125 |
Q |
| |
|
|||||||||| |
|
|
| T |
36735480 |
caagatttgt |
36735471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5414 times since January 2019
Visitors: 4850