View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0771_low_21 (Length: 243)
Name: NF0771_low_21
Description: NF0771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0771_low_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 14 - 243
Target Start/End: Original strand, 41705132 - 41705360
Alignment:
| Q |
14 |
atcatcacacaccactccatctacaaattcaaaaactcttctcctctctctgtattcaagttccaacacnnnnnnnncaaatac--tgtttaaccaaatg |
111 |
Q |
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| T |
41705132 |
atcatcacacaccactccatctacaaattcaaaaactcttctcctctct--gtattcaagttccaacacaaaaaaa-caaataccctgtttaaccaaatg |
41705228 |
T |
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| Q |
112 |
gcttctcccctgttatttctcctcatcatcacactcttcatttcacattcttcatatcaaatgctactattacctctaacacactcactctccataatag |
211 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41705229 |
gcttctcccctgttatttctcctcctcatcacactcttcatttcacattcttcatctcaaatgctactattacctctaacacactcactctccatgatag |
41705328 |
T |
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| Q |
212 |
aattcaacacaaccaaccacctccttaaatcc |
243 |
Q |
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|||||||||||||| ||||||||||||||||| |
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| T |
41705329 |
aattcaacacaacccaccacctccttaaatcc |
41705360 |
T |
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