View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0771_low_3 (Length: 433)
Name: NF0771_low_3
Description: NF0771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0771_low_3 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 29 - 433
Target Start/End: Original strand, 33485208 - 33485609
Alignment:
| Q |
29 |
gcatcttcaatagctagttaactacct-tgaagtgtttgacaagaactttgtaaagaacaattttgttgataggctttgcaatcattattatttgatctc |
127 |
Q |
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||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33485208 |
gcatcttcaatagctagttaactacctctggagtgtttgacaagaactttgtaaagaacaattttgttcataggctttgcaatcattattatttgatctc |
33485307 |
T |
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| Q |
128 |
gaataagttcaagtcgacctttgttcatatgttgagtgcttgagattgtcttcaaatcttgaatcagtttgcaagactccattcctccatgtaactactc |
227 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
33485308 |
gaataagtttaagtcgacctttgttcatatgttgagtgcttgagattgtcttcaaatctttaatcagtttgcaagactccattcctctgtgtaactactc |
33485407 |
T |
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| Q |
228 |
cctgaaaaaagttgtataaaccaggccaacacaacaatagaagggaggagaagaaattcaaagttcttgattgaacaagaacatcatgaggaagggatgg |
327 |
Q |
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| T |
33485408 |
cctgaaaaaagttgtataaa-----ccaacacaacaatagaagggaggagaagaaattcaaagttcttgattgaacaagaacatcatgaggaagggatgg |
33485502 |
T |
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| Q |
328 |
atacaactttttcagatatggttttccctctca-nnnnnnnaagatcccttgattgataaaagacgatgaagatttgagtttttatttgggaatttattt |
426 |
Q |
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| T |
33485503 |
atacaactttttcagatatggttttccctctcattttttttaagatcccttgattgataaaagacgatgaagatttgagtttttctttgggaatttatgt |
33485602 |
T |
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| Q |
427 |
tcgttga |
433 |
Q |
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| T |
33485603 |
tctttga |
33485609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 49861753 - 49861692
Alignment:
| Q |
161 |
gagtgcttgagattgtcttcaaatcttgaatcagtttgcaa-gactccattcctccatgtaa |
221 |
Q |
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| T |
49861753 |
gagtgcttgagattgtcttcaaatcttgaatcagtttgcaatgactccattcctccctgtaa |
49861692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 49862259 - 49862177
Alignment:
| Q |
29 |
gcatcttcaatagctagttaactacct-tgaagtgtttgacaagaactttgtaaagaacaattttgttgataggctttgcaat |
110 |
Q |
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| T |
49862259 |
gcatctccaatagctagttgactatctctggagtgtttgacaagagcttcgtaaagaacagttttgttcatagacttagcaat |
49862177 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 360
Target Start/End: Complemental strand, 3561 - 3473
Alignment:
| Q |
268 |
aagggaggagaagaaattcaaagttcttgattgaacaagaacatcatgaggaagggatggatacaactttttcagatatggttttccctctca |
360 |
Q |
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|||| |||||||||||||||||||| || | |||||||||||| || |||| |||| |||||||||||||| ||||| ||||| |||||| |
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| T |
3561 |
aaggaaggagaagaaattcaaagtttttca----acaagaacatcaagaagaagagatgaatacaactttttcaaatatgattttctctctca |
3473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 360
Target Start/End: Complemental strand, 11217 - 11129
Alignment:
| Q |
268 |
aagggaggagaagaaattcaaagttcttgattgaacaagaacatcatgaggaagggatggatacaactttttcagatatggttttccctctca |
360 |
Q |
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| T |
11217 |
aaggaaggagaagaaattcaaagtttttca----acaagaacatcaagaagaagagatgaatacaactttttcaaatatgattttctctctca |
11129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 360
Target Start/End: Complemental strand, 6509537 - 6509449
Alignment:
| Q |
268 |
aagggaggagaagaaattcaaagttcttgattgaacaagaacatcatgaggaagggatggatacaactttttcagatatggttttccctctca |
360 |
Q |
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|||| |||||||||||||||||||| || | |||||||||||| || |||| |||| |||||||||||||| ||||| ||||| |||||| |
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| T |
6509537 |
aaggaaggagaagaaattcaaagtttttca----acaagaacatcaagaagaagagatgaatacaactttttcaaatatgattttctctctca |
6509449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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