View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0771_low_4 (Length: 395)

Name: NF0771_low_4
Description: NF0771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0771_low_4
NF0771_low_4
[»] chr7 (1 HSPs)
chr7 (1-298)||(29425297-29425593)


Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 29425593 - 29425297
Alignment:
Q  1 ggtgttcgccggactccggtaactacattttgtaatttgagttgaattctgattattactatttttgctggatttagatgacaaaaatgttaccnnnnnn 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  29425593 ggtgttcgccggactccggtaactacattttgtaatttgagttgaattctgattattactatttttgctggatttagatgacaaaaatgttacctttttt 29425494  T
Q  101 ncttaatttgagttaaatttgtgatttttacttgttatgcatgatgtttttgagttaaatcagtgatttttacttgttatgaatgatgaaattgagttcc 200  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29425493 tcttaatttgagttaaatttgtgatttttacttgttatgcatgatgtttttgagttaaatcagtgatttttacttgttgtgaatgatgaaattgagttcc 29425394  T
Q  201 tcttnnnnnnnntgatgggtttgagttaaagttttgattttcatcttttattttgttgttaattgagcttgaatttgagttaattaacgtttgtgatt 298  Q
    ||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29425393 tctt-aaaaaaatgatgggtttgagttaaagttttgattttcatcttttattttgttgttaattgagcttgaatttgagttaattaacgtttgtgatt 29425297  T

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