View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0771_low_8 (Length: 364)
Name: NF0771_low_8
Description: NF0771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0771_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 146; Significance: 8e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 13 - 337
Target Start/End: Complemental strand, 18154079 - 18153754
Alignment:
| Q |
13 |
aatatcattcttttttggtaaaatatgataatatcattcnnnnnnnnnnnnngtagaatatgataatataattcnnnnnnngttacaatggataattctt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
18154079 |
aatatcattcttttttggtaaaatatgataatatcattcttttttcttttttgtagaatatgataatatcattctttttttgttacaatggataattctt |
18153980 |
T |
|
| Q |
113 |
tccttgaatatttcttgttaatggtannnnnnnnncttatatttgaacattatnnnnnnnnnnnnnnnntacgacagatcaattgttcataattttttac |
212 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
18153979 |
tccttgaatatttcttgttaatggtatttttttttcttatatttgaacattataaaaataaaaataaaatacgacagatcaattgttcataattttttac |
18153880 |
T |
|
| Q |
213 |
tcaataatacttgaatgatatgataagagannnnnnn-aacatgattagatatcgtgagttcgaatctagctgtgttaaattccacaagaactgtcgcac |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
18153879 |
tcaataatacttgaatgatatgataagagattttttttaacataattagatatcgtgagtttgaatctagcagtgttaaattccacaagaactgtcgcac |
18153780 |
T |
|
| Q |
312 |
agaggatacttgttttactttcaccg |
337 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
18153779 |
agaggatacttgttttactttcaccg |
18153754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2783 times since January 2019
Visitors: 4801