View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0772_low_13 (Length: 343)
Name: NF0772_low_13
Description: NF0772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0772_low_13 |
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| [»] scaffold1079 (1 HSPs) |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 18347995 - 18347748
Alignment:
| Q |
1 |
attgggtcgaactcttttttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaagggtagaagaatgcgacctattatgggacatagacc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18347995 |
attgggtcgaactcttttttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaagggtagaagaatgcgacctattatgggacatagacc |
18347896 |
T |
|
| Q |
101 |
gcattacaaacgtatgatcattacgcttcaaccgggttattctattccacctcttagaaaagaacttaactaaaaatacacttaatagcatggcgataca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
18347895 |
gcattacaaacgtatgatcattacgcttcaaccgggttattctattctacctcttagaaaagaacttaaataaaaatacacttaatagcatggcgataca |
18347796 |
T |
|
| Q |
201 |
tttatacaaaacttctatcccgagcacccgcacacgaaatcgtttgat |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18347795 |
tttatacaaaacttctatcccgagcacccgcacacgaaatcgtttgat |
18347748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 16899480 - 16899233
Alignment:
| Q |
1 |
attgggtcgaactcttttttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaagggtagaagaatgcgacctattatgggacatagacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
16899480 |
attgggtcgaactcttttttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaatggtagaagaatgcgacctattatgggacatagacc |
16899381 |
T |
|
| Q |
101 |
gcattacaaacgtatgatcattacgcttcaaccgggttattctattccacctcttagaaaagaacttaactaaaaatacacttaatagcatggcgataca |
200 |
Q |
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| T |
16899380 |
gcattacaaacgtatgatcattacgcttcaaccgggttattctattctacctcttagaaaagaacttaaataaaaatacacttaatagcatggcgataca |
16899281 |
T |
|
| Q |
201 |
tttatacaaaacttctatcccgagcacccgcacacgaaatcgtttgat |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16899280 |
tttatacaaaacttctatcccgagcacccgcacacgaaatcgtttgat |
16899233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 13236496 - 13236743
Alignment:
| Q |
1 |
attgggtcgaactcttttttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaagggtagaagaatgcgacctattatgggacatagacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13236496 |
attgggtcgaactcttttttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaagggtagaagaatgcgacctattatgggacatagacc |
13236595 |
T |
|
| Q |
101 |
gcattacaaacgtatgatcattacgcttcaaccgggttattctattccacctcttagaaaagaacttaactaaaaatacacttaatagcatggcgataca |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
13236596 |
gcattacaaacgtatgatcattacgcttcaaccgggttattctattctacctcttagaaaagaacttaaataaaaatacacttaatagcatggcgataca |
13236695 |
T |
|
| Q |
201 |
tttatacaaaacttctatcccgagcacccgcacacgaaatcgtttgat |
248 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13236696 |
tttatacaaaacttctatcccgagcacccgcacacgaaatcgtttgat |
13236743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1079 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: scaffold1079
Description:
Target: scaffold1079; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 487 - 254
Alignment:
| Q |
1 |
attgggtcgaactcttttttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaagggtagaagaatgcgacctattatgggacatagacc |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| | |
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| T |
487 |
attgggtcgaactcttctttggtgtcaaggtaatagctatgaatagtcatcgactcccccgaaagggtagaagaatgggacctattatgggacatacaat |
388 |
T |
|
| Q |
101 |
gcattacaaacgtatgatcattacgcttcaaccgggttattctattccacctctta----gaaaagaacttaactaaaaatacacttaatagcatggcga |
196 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||| ||||||||||||||||| |
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| T |
387 |
gcattacaggcgtatgatcattacgcttcaaccgggttattctattccacctcttacaacgaaaagaacttaaatcaaaat--acttaatagcatggcga |
290 |
T |
|
| Q |
197 |
tacatttatacaaaacttctatcccgagcacccgca |
232 |
Q |
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||||||||||||||||||||| |||| |||| |||| |
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| T |
289 |
tacatttatacaaaacttctaccccgggcacacgca |
254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 197979 - 198128
Alignment:
| Q |
1 |
attgggtcgaactcttttttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaagggtagaagaatgcgacctattatgggacatagacc |
100 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| ||||| ||||||| |||||||| || ||| ||||||||||| |||||||| |||| |||| | |
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| T |
197979 |
attgggtcgaactcttctttggtgttaaggtggtagctgtgaatagccatcgactacctggaaaaggtagaagaataggacctattctgggccatacaat |
198078 |
T |
|
| Q |
101 |
gcattacaaacgtatgatcattacgcttcaaccgggttattctattccac |
150 |
Q |
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|||||||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
198079 |
gcattacagacgtatgatcattacccttcaaccgggttattctattccac |
198128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 34 - 150
Target Start/End: Original strand, 256446 - 256562
Alignment:
| Q |
34 |
tagctatgaatagtcatcgactcccaataaagggtagaagaatgcgacctattatgggacatagaccgcattacaaacgtatgatcattacgcttcaacc |
133 |
Q |
| |
|
||||| ||||||| |||||||| || ||| ||||||||||| |||||||| |||| | || | |||||||| ||||||||||||||| |||||||| |
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|
| T |
256446 |
tagctgtgaatagccatcgactacctggaaaaggtagaagaataggacctattctgggccgtacaatgcattacagacgtatgatcattacccttcaacc |
256545 |
T |
|
| Q |
134 |
gggttattctattccac |
150 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
256546 |
gggttattctattccac |
256562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 10404035 - 10403965
Alignment:
| Q |
1 |
attgggtcgaactcttttttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaagggtaga |
71 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10404035 |
attgggtcgaactcttatttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaagggtaga |
10403965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 42203407 - 42203482
Alignment:
| Q |
1 |
attgggtcgaactcttttttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaagggtagaagaat |
76 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
42203407 |
attgggtcgaactcttctttgatgtcaaggtaatagctatgaatagtcatcgactcccaataaaggataaaagaat |
42203482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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