View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0772_low_2 (Length: 557)
Name: NF0772_low_2
Description: NF0772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0772_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 212 - 415
Target Start/End: Complemental strand, 52053667 - 52053464
Alignment:
| Q |
212 |
ttggatccctccatggagacacatatccacttcaacaacaacacatgtacagtagtgggaaaaagtgggaacaaaacaattcaagtgaaactagaaaacc |
311 |
Q |
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| T |
52053667 |
ttggatccctccatggagacacatatccacttcaacaacaacacatgtacagtagtgggaaaaagtgggaacaaaacaattcaagtgaaactagaaaacc |
52053568 |
T |
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| Q |
312 |
ttacagaaaatatgaatgaactactagagtctagtactagtactacattattattgaccttagattcaattaaaaggaacccatccataattgaaatcca |
411 |
Q |
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| T |
52053567 |
ttacagaaaatatgaatgaactactagagtctagtactagtactacattattattgaccttagattcaattaaaaggaacccatccataattgaaatcca |
52053468 |
T |
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| Q |
412 |
agct |
415 |
Q |
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|||| |
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| T |
52053467 |
agct |
52053464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 22 - 146
Target Start/End: Complemental strand, 52053857 - 52053733
Alignment:
| Q |
22 |
catcatcatgctagcatccaataatgtactcatcgcatacgtgtgtgatgtgtctttgaatataagctgaaacagacacggccaaataactggtagagtc |
121 |
Q |
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|||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52053857 |
catcataatgctagcatccaataatgtactcaacacatacgtgtgtgatgtgtctttgaatataagctgaaacagacacggccaaataactggtagagtc |
52053758 |
T |
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| Q |
122 |
tgaaaactgaaaccatgtttggcag |
146 |
Q |
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|||||||||||| |||||||||||| |
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| T |
52053757 |
tgaaaactgaaatcatgtttggcag |
52053733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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