View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0772_low_20 (Length: 203)

Name: NF0772_low_20
Description: NF0772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0772_low_20
NF0772_low_20
[»] scaffold0111 (2 HSPs)
scaffold0111 (20-153)||(8502-8635)
scaffold0111 (20-153)||(15646-15779)
[»] scaffold0043 (1 HSPs)
scaffold0043 (20-153)||(77141-77274)
[»] chr5 (22 HSPs)
chr5 (20-153)||(21885159-21885292)
chr5 (20-153)||(26172467-26172600)
chr5 (20-151)||(25229378-25229509)
chr5 (20-151)||(25293534-25293665)
chr5 (20-151)||(4036222-4036354)
chr5 (23-153)||(10752949-10753079)
chr5 (20-146)||(16674155-16674281)
chr5 (20-146)||(33409231-33409357)
chr5 (20-107)||(18355960-18356047)
chr5 (20-146)||(18774205-18774332)
chr5 (23-146)||(17718416-17718538)
chr5 (20-146)||(18784048-18784175)
chr5 (20-147)||(24533024-24533151)
chr5 (20-107)||(20911186-20911273)
chr5 (20-147)||(26666107-26666234)
chr5 (20-147)||(26937704-26937831)
chr5 (20-146)||(26742723-26742850)
chr5 (20-146)||(21340744-21340870)
chr5 (20-146)||(42805422-42805549)
chr5 (20-146)||(20232553-20232679)
chr5 (41-146)||(10753387-10753488)
chr5 (20-146)||(23535564-23535691)
[»] chr2 (13 HSPs)
chr2 (20-153)||(41666952-41667085)
chr2 (14-153)||(26125205-26125339)
chr2 (20-151)||(27263275-27263407)
chr2 (20-151)||(60819-60949)
chr2 (20-146)||(23187078-23187204)
chr2 (20-146)||(23598341-23598467)
chr2 (20-142)||(19928483-19928605)
chr2 (20-146)||(18855438-18855562)
chr2 (20-107)||(31344880-31344967)
chr2 (23-147)||(22461165-22461289)
chr2 (41-146)||(41530986-41531087)
chr2 (41-146)||(30344973-30345074)
chr2 (41-146)||(1283412-1283513)
[»] scaffold0008 (1 HSPs)
scaffold0008 (20-153)||(1879-2012)
[»] chr8 (19 HSPs)
chr8 (20-153)||(32605213-32605346)
chr8 (20-153)||(32598681-32598814)
chr8 (20-119)||(17055383-17055482)
chr8 (20-146)||(23846992-23847118)
chr8 (20-146)||(30308730-30308856)
chr8 (20-146)||(15531892-15532018)
chr8 (20-146)||(16231452-16231579)
chr8 (20-107)||(21383656-21383743)
chr8 (20-146)||(23834174-23834301)
chr8 (20-146)||(15538451-15538577)
chr8 (20-107)||(21387076-21387163)
chr8 (20-107)||(14398124-14398211)
chr8 (20-112)||(17828593-17828685)
chr8 (20-112)||(24445517-24445609)
chr8 (20-146)||(22044886-22045013)
chr8 (41-146)||(18862627-18862728)
chr8 (41-146)||(21827996-21828097)
chr8 (41-107)||(21410973-21411039)
chr8 (41-107)||(21805465-21805531)
[»] chr4 (27 HSPs)
chr4 (20-153)||(14708604-14708737)
chr4 (20-153)||(28569414-28569547)
chr4 (20-153)||(42997420-42997553)
chr4 (23-153)||(15224800-15224930)
chr4 (20-142)||(3412801-3412923)
chr4 (20-146)||(18236894-18237020)
chr4 (20-146)||(26243642-26243768)
chr4 (20-146)||(16243377-16243503)
chr4 (20-146)||(19757578-19757704)
chr4 (20-146)||(19782102-19782228)
chr4 (20-146)||(2014781-2014907)
chr4 (20-146)||(1951738-1951865)
chr4 (20-145)||(23139274-23139398)
chr4 (20-142)||(18602712-18602834)
chr4 (20-146)||(18222355-18222482)
chr4 (20-146)||(17152464-17152590)
chr4 (20-107)||(43256428-43256515)
chr4 (20-146)||(18228830-18228957)
chr4 (20-112)||(45938151-45938243)
chr4 (20-146)||(22634398-22634526)
chr4 (41-146)||(10712876-10712977)
chr4 (41-146)||(10926646-10926747)
chr4 (20-107)||(18609319-18609406)
chr4 (20-146)||(9530437-9530562)
chr4 (41-101)||(14954190-14954250)
chr4 (41-101)||(25689893-25689953)
chr4 (41-101)||(12487734-12487794)
[»] scaffold0585 (1 HSPs)
scaffold0585 (20-149)||(9337-9466)
[»] scaffold0371 (1 HSPs)
scaffold0371 (20-153)||(15340-15473)
[»] chr3 (28 HSPs)
chr3 (20-153)||(16696788-16696921)
chr3 (23-153)||(4589164-4589294)
chr3 (23-153)||(19775353-19775483)
chr3 (20-146)||(16798031-16798157)
chr3 (20-146)||(38814387-38814513)
chr3 (20-146)||(3833677-3833803)
chr3 (20-146)||(16808858-16808984)
chr3 (20-107)||(12339469-12339556)
chr3 (20-107)||(8489487-8489574)
chr3 (20-107)||(15464868-15464955)
chr3 (23-144)||(15850063-15850183)
chr3 (20-107)||(5223067-5223154)
chr3 (23-146)||(16750570-16750689)
chr3 (23-147)||(17241978-17242102)
chr3 (23-145)||(31097532-31097656)
chr3 (22-107)||(11854422-11854507)
chr3 (20-112)||(1598490-1598582)
chr3 (20-146)||(15482665-15482793)
chr3 (20-112)||(15941915-15942007)
chr3 (41-146)||(4111231-4111332)
chr3 (41-146)||(15964995-15965096)
chr3 (41-146)||(15968919-15969020)
chr3 (41-146)||(15972843-15972944)
chr3 (41-146)||(19775791-19775892)
chr3 (41-107)||(4107414-4107480)
chr3 (20-107)||(11300781-11300869)
chr3 (41-146)||(37439618-37439719)
chr3 (41-89)||(14665427-14665475)
[»] chr7 (27 HSPs)
chr7 (20-151)||(16275494-16275625)
chr7 (20-151)||(14216917-14217048)
chr7 (20-151)||(15728327-15728458)
chr7 (20-153)||(35151608-35151741)
chr7 (20-146)||(8917429-8917555)
chr7 (20-146)||(18556975-18557101)
chr7 (20-153)||(16724601-16724733)
chr7 (20-153)||(17701615-17701747)
chr7 (20-146)||(13149157-13149283)
chr7 (20-146)||(13461763-13461889)
chr7 (20-146)||(9593347-9593474)
chr7 (31-146)||(11987225-11987340)
chr7 (20-146)||(19035-19162)
chr7 (20-107)||(13918795-13918882)
chr7 (41-146)||(16457334-16457439)
chr7 (20-101)||(1859107-1859188)
chr7 (23-146)||(18425443-18425562)
chr7 (20-89)||(25927536-25927605)
chr7 (23-129)||(2530384-2530491)
chr7 (20-146)||(13635445-13635573)
chr7 (20-146)||(16583258-16583386)
chr7 (20-146)||(7519335-7519461)
chr7 (41-146)||(45169988-45170089)
chr7 (42-147)||(6801237-6801341)
chr7 (20-146)||(12318129-12318257)
chr7 (20-146)||(15580693-15580821)
chr7 (94-146)||(9644385-9644437)
[»] scaffold0034 (1 HSPs)
scaffold0034 (24-153)||(16633-16762)
[»] scaffold0130 (1 HSPs)
scaffold0130 (20-151)||(5972-6103)
[»] scaffold0044 (3 HSPs)
scaffold0044 (20-151)||(62263-62394)
scaffold0044 (20-146)||(12906-13034)
scaffold0044 (20-146)||(19190-19318)
[»] scaffold0546 (2 HSPs)
scaffold0546 (20-153)||(1902-2035)
scaffold0546 (20-146)||(6234-6360)
[»] scaffold0109 (3 HSPs)
scaffold0109 (20-153)||(11272-11405)
scaffold0109 (20-153)||(38789-38922)
scaffold0109 (20-146)||(6947-7073)
[»] chr6 (24 HSPs)
chr6 (20-153)||(21702290-21702423)
chr6 (20-151)||(1587703-1587834)
chr6 (23-153)||(1644293-1644423)
chr6 (23-153)||(31478201-31478331)
chr6 (20-151)||(20803526-20803657)
chr6 (20-146)||(5616792-5616918)
chr6 (20-153)||(25135642-25135775)
chr6 (20-146)||(9482270-9482396)
chr6 (20-146)||(22592780-22592906)
chr6 (20-146)||(12706691-12706818)
chr6 (20-146)||(12496311-12496437)
chr6 (20-107)||(23414648-23414735)
chr6 (20-107)||(27556406-27556493)
chr6 (23-147)||(19662775-19662899)
chr6 (20-147)||(2685295-2685422)
chr6 (20-146)||(16741208-16741335)
chr6 (23-146)||(16624137-16624256)
chr6 (20-80)||(27416230-27416290)
chr6 (41-146)||(31477792-31477893)
chr6 (44-146)||(16760321-16760419)
chr6 (41-101)||(22949131-22949191)
chr6 (41-101)||(22953087-22953147)
chr6 (41-101)||(23871575-23871635)
chr6 (41-101)||(23875531-23875591)
[»] scaffold0029 (3 HSPs)
scaffold0029 (23-153)||(80300-80430)
scaffold0029 (41-146)||(80738-80842)
scaffold0029 (41-146)||(65504-65611)
[»] chr1 (15 HSPs)
chr1 (23-153)||(20229200-20229330)
chr1 (20-146)||(18882370-18882496)
chr1 (20-143)||(20138085-20138209)
chr1 (20-146)||(19211869-19211996)
chr1 (20-146)||(46975470-46975596)
chr1 (20-107)||(33797285-33797372)
chr1 (23-147)||(12646876-12647000)
chr1 (41-146)||(23819276-23819381)
chr1 (23-89)||(39244176-39244242)
chr1 (23-89)||(39247731-39247797)
chr1 (23-146)||(41388223-41388342)
chr1 (41-146)||(1925111-1925212)
chr1 (41-146)||(20924125-20924226)
chr1 (20-143)||(36819287-36819413)
chr1 (25-146)||(24783076-24783199)
[»] scaffold0037 (1 HSPs)
scaffold0037 (23-153)||(80746-80876)
[»] scaffold1552 (1 HSPs)
scaffold1552 (20-142)||(371-493)
[»] scaffold0070 (1 HSPs)
scaffold0070 (20-146)||(9906-10032)
[»] scaffold0284 (1 HSPs)
scaffold0284 (20-146)||(18357-18483)
[»] scaffold0120 (1 HSPs)
scaffold0120 (20-146)||(19994-20120)
[»] scaffold0042 (2 HSPs)
scaffold0042 (20-146)||(63857-63982)
scaffold0042 (20-146)||(75741-75866)
[»] scaffold0001 (1 HSPs)
scaffold0001 (20-146)||(173294-173420)
[»] scaffold0168 (1 HSPs)
scaffold0168 (20-146)||(3507-3634)
[»] scaffold0009 (1 HSPs)
scaffold0009 (20-146)||(228350-228476)
[»] scaffold0193 (1 HSPs)
scaffold0193 (20-146)||(9423-9549)
[»] scaffold0334 (1 HSPs)
scaffold0334 (23-146)||(18337-18461)
[»] scaffold0293 (1 HSPs)
scaffold0293 (20-107)||(20480-20567)
[»] scaffold0013 (1 HSPs)
scaffold0013 (20-146)||(2649-2776)
[»] scaffold0228 (1 HSPs)
scaffold0228 (20-146)||(18608-18736)
[»] scaffold0051 (1 HSPs)
scaffold0051 (23-107)||(30890-30974)
[»] scaffold0003 (2 HSPs)
scaffold0003 (20-112)||(139714-139806)
scaffold0003 (20-80)||(71071-71131)
[»] scaffold0299 (1 HSPs)
scaffold0299 (20-107)||(6683-6770)
[»] scaffold0132 (1 HSPs)
scaffold0132 (20-139)||(36309-36427)
[»] scaffold0010 (1 HSPs)
scaffold0010 (20-146)||(23218-23345)
[»] scaffold0012 (2 HSPs)
scaffold0012 (20-146)||(24945-25073)
scaffold0012 (41-146)||(189359-189460)
[»] scaffold0016 (1 HSPs)
scaffold0016 (20-78)||(207894-207952)
[»] scaffold0229 (1 HSPs)
scaffold0229 (41-146)||(11483-11584)
[»] scaffold0141 (1 HSPs)
scaffold0141 (41-146)||(14069-14170)
[»] scaffold0031 (1 HSPs)
scaffold0031 (41-146)||(36068-36169)
[»] scaffold0405 (1 HSPs)
scaffold0405 (20-146)||(9642-9769)
[»] scaffold1461 (1 HSPs)
scaffold1461 (94-146)||(6-58)
[»] scaffold0157 (1 HSPs)
scaffold0157 (41-101)||(32683-32743)
[»] scaffold0104 (1 HSPs)
scaffold0104 (41-89)||(9539-9587)


Alignment Details
Target: scaffold0111 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 8502 - 8635
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8502 tcatcatcaacttattcataatcatgcaacttagttaaataacaattgcaacataatcaaatcacatcaagttaaataacaaatcattctcaatagtttc 8601  T
Q  120 ttgatcattcaacaacaattcaagtaagtataat 153  Q
    ||||||||||||||||||||| ||||||||||||    
T  8602 ttgatcattcaacaacaattctagtaagtataat 8635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 15646 - 15779
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  15646 tcatcatcaacttattcataatcatgcaacttagttaaataacaattgcaacataatcaaatcacatcaagttaaataacaaatcattctcaatagtttc 15745  T
Q  120 ttgatcattcaacaacaattcaagtaagtataat 153  Q
    ||||||||||||||||||||| ||||||||||||    
T  15746 ttgatcattcaacaacaattctagtaagtataat 15779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 77274 - 77141
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  77274 tcatcatcaacttattcataatcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagttaaataacaaatcattctcaatagtttc 77175  T
Q  120 ttgatcattcaacaacaattcaagtaagtataat 153  Q
    ||||||||||||||||||||||||||||||||||    
T  77174 ttgatcattcaacaacaattcaagtaagtataat 77141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 21885292 - 21885159
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  21885292 tcatcatcaacttattcataatcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagttaaataacaaatcattctcaatagtttc 21885193  T
Q  120 ttgatcattcaacaacaattcaagtaagtataat 153  Q
    ||||||||||||||||||||||||||||||||||    
T  21885192 ttgatcattcaacaacaattcaagtaagtataat 21885159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 26172467 - 26172600
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    |||||||||||||| |||||||||| ||||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  26172467 tcatcatcaacttaatcataatcattcaacttagttaaataacaattgcagcataatcaaatcacatcaagttaaataacaaatcgttctcaatagtttc 26172566  T
Q  120 ttgatcattcaacaacaattcaagtaagtataat 153  Q
    ||||||||||||||||||||||||||||| ||||    
T  26172567 ttgatcattcaacaacaattcaagtaagtgtaat 26172600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 25229509 - 25229378
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    |||||||||||||||||||| ||||||||||||||| || ||||||| || ||||||||| |||||||| |||||||||||||||||||||||||||||     
T  25229509 tcatcatcaacttattcatattcatgcaacttagtttaataacaattgcagcataatcaaatcacatcaggttaaataacaaatcattctcaatagttta 25229410  T
Q  120 ttgatcattcaacaacaattcaagtaagtata 151  Q
    ||||||||||||||| |||||||| |||||||    
T  25229409 ttgatcattcaacaataattcaagcaagtata 25229378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 25293665 - 25293534
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    |||||||||||||||||||| ||||||||||||||| || ||||||| || ||||||||| |||||||| |||||||||||||||||||||||||||||     
T  25293665 tcatcatcaacttattcatattcatgcaacttagtttaataacaattgcagcataatcaaatcacatcaggttaaataacaaatcattctcaatagttta 25293566  T
Q  120 ttgatcattcaacaacaattcaagtaagtata 151  Q
    ||||||||||||||| |||||||| |||||||    
T  25293565 ttgatcattcaacaataattcaagcaagtata 25293534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 4036222 - 4036354
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatag-ttt 118  Q
    |||||||||||||||||||| ||||||||||||||| || ||||||| || ||||||||| |||||||| |||||||||||||||||||||||||| |||    
T  4036222 tcatcatcaacttattcatattcatgcaacttagtttaataacaattgcagcataatcaaatcacatcaggttaaataacaaatcattctcaatagtttt 4036321  T
Q  119 cttgatcattcaacaacaattcaagtaagtata 151  Q
    |||||||||||||||| |||||||| |||||||    
T  4036322 cttgatcattcaacaataattcaagcaagtata 4036354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 23 - 153
Target Start/End: Original strand, 10752949 - 10753079
Alignment:
Q  23 tcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttg 122  Q
    ||||||||||||||||| || ||||||||||||||| ||||||| || |||||| || |||||||||||||||||||||||||||||| | |||||||||    
T  10752949 tcatcaacttattcatactcttgcaacttagttaaataacaattgcagcataattaaatcacatcaagttaaataacaaatcattctcgaaagtttcttg 10753048  T
Q  123 atcattcaacaacaattcaagtaagtataat 153  Q
    |||||||||||| |||||||||| |||||||    
T  10753049 atcattcaacaagaattcaagtaggtataat 10753079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 16674155 - 16674281
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||| ||||||| ||| ||||||||||||||||| |||| || || ||||||||| ||||| || ||| ||||||||||||||||||| | ||||    
T  16674155 tcatcatcagcttattcttaaacatgcaacttagttaaataacatttgcagcataatcaaatcacaacaggtttaataacaaatcattctcaacaatttc 16674254  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||||| |||||||||||    
T  16674255 ttgatcattcaacaataattcaagtaa 16674281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 33409231 - 33409357
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||| ||||||||||  ||||||||||||||||| |||| || || ||||||||| ||||| || ||| ||||||||||||||||||| | ||||    
T  33409231 tcatcatcagcttattcatagacatgcaacttagttaaataacatttgcagcataatcaaatcacaacaggtttaataacaaatcattctcaacaatttc 33409330  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||||| |||||||||||    
T  33409331 ttgatcattcaacaataattcaagtaa 33409357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 18355960 - 18356047
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcatt 107  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||| |||||||||||| |||||||| |||||    
T  18355960 tcatcatcaacttattcatactcatgcaacttagttaaataacaattgcaacataatcaaatcacatcaagtttaataacaattcatt 18356047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 18774205 - 18774332
Alignment:
Q  20 tcatcatcaactta-ttcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagttt 118  Q
    |||||||||||||| |||| | ||||||||| ||||| || ||||||| || ||||||||| |||||||||| | |||||||||||||| |||| | |||    
T  18774205 tcatcatcaacttaattcagactcatgcaacatagtttaataacaattgcagcataatcaaatcacatcaagcttaataacaaatcattttcaacaattt 18774304  T
Q  119 cttgatcattcaacaacaattcaagtaa 146  Q
    |||||||||||||||| |||||||||||    
T  18774305 cttgatcattcaacaataattcaagtaa 18774332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 23 - 146
Target Start/End: Complemental strand, 17718538 - 17718416
Alignment:
Q  23 tcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttg 122  Q
    |||||| ||||||||||| ||||||||||||||||| |||| || |  ||||||||| |||||||| ||| ||||||| ||||||||||| | |||||||    
T  17718538 tcatcagcttattcataa-catgcaacttagttaaataacatttgccgcataatcaaatcacatcatgttcaataacagatcattctcaacaatttcttg 17718440  T
Q  123 atcattcaacaacaattcaagtaa 146  Q
    ||||||||| || |||||||||||    
T  17718439 atcattcaataataattcaagtaa 17718416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 18784048 - 18784175
Alignment:
Q  20 tcatcatcaactta-ttcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagttt 118  Q
    |||||||||||||| |||| | ||||||||| ||||| || ||||||| || ||||||||| |||||||||| | |||||||||||||| |||| | |||    
T  18784048 tcatcatcaacttaattcagactcatgcaacatagtttaataacaattgcagcataatcaaatcacatcaagcttaataacaaatcattttcaacaattt 18784147  T
Q  119 cttgatcattcaacaacaattcaagtaa 146  Q
    ||| |||||||||||| |||||||||||    
T  18784148 ctttatcattcaacaataattcaagtaa 18784175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 24533151 - 24533024
Alignment:
Q  20 tcatcatcaacttatt-cataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagttt 118  Q
    |||||||||||||||| || | ||||||||| ||||| || ||||||| |||||||||||| |||| ||||| | ||||||||||||||||||| |  ||    
T  24533151 tcatcatcaacttatttcagactcatgcaacatagtttaataacaattgcaacataatcaaatcacgtcaagcttaataacaaatcattctcaaca-att 24533053  T
Q  119 cttgatcattcaacaacaattcaagtaag 147  Q
    |||||||| ||||||| ||||||||||||    
T  24533052 cttgatcaatcaacaataattcaagtaag 24533024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 20911273 - 20911186
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcatt 107  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||| || ||||||||| |||||||||| | |||||||| |||||    
T  20911273 tcatcatcaacttattcatactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaattcatt 20911186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 26666234 - 26666107
Alignment:
Q  20 tcatcatcaacttatt-cataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagttt 118  Q
    |||||||||||||||| || | ||||||||| ||||| || ||||||| || ||||||||| |||| ||||| | ||||||||||||||||||| |  ||    
T  26666234 tcatcatcaacttatttcagactcatgcaacatagtttaataacaattgcagcataatcaaatcacgtcaagcttaataacaaatcattctcaaca-att 26666136  T
Q  119 cttgatcattcaacaacaattcaagtaag 147  Q
    |||||||| ||||||| ||||||||||||    
T  26666135 cttgatcaatcaacaataattcaagtaag 26666107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 26937831 - 26937704
Alignment:
Q  20 tcatcatcaacttatt-cataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagttt 118  Q
    |||||||||||||||| || | ||||||||| ||||| || ||||||| || ||||||||| |||| ||||| | ||||||||||||||||||| |  ||    
T  26937831 tcatcatcaacttatttcagactcatgcaacatagtttaataacaattgcagcataatcaaatcacgtcaagcttaataacaaatcattctcaaca-att 26937733  T
Q  119 cttgatcattcaacaacaattcaagtaag 147  Q
    |||||||| ||||||| ||||||||||||    
T  26937732 cttgatcaatcaacaataattcaagtaag 26937704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 26742850 - 26742723
Alignment:
Q  20 tcatcatcaactta-ttcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagttt 118  Q
    |||||||||||||| |||| | |||||||||||||||||| |||| || || ||||||||| |||||||| | | |||||||| |||||||||| | ||     
T  26742850 tcatcatcaacttagttcagactcatgcaacttagttaaataacatttgcagcataatcaaatcacatcaggcttaataacaactcattctcaacaattc 26742751  T
Q  119 cttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||| || ||||| |||||    
T  26742750 cttgatcattcaataataattcgagtaa 26742723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 21340870 - 21340744
Alignment:
Q  20 tcatcatcaacttatt-cataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagttt 118  Q
    |||||||||||||||| || | |||||||||||||||||| |||| || || ||||||||| |||||||||| | |||||||||||||||| || |  ||    
T  21340870 tcatcatcaacttatttcagactcatgcaacttagttaaataacatttgcagcataatcaaatcacatcaagcttaataacaaatcattctaaaca-att 21340772  T
Q  119 cttgatcattcaacaacaattcaagtaa 146  Q
    |||||||| | ||||| ||||| |||||    
T  21340771 cttgatcaattaacaataattcgagtaa 21340744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 42805422 - 42805549
Alignment:
Q  20 tcatcatcaactta-ttcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagttt 118  Q
    |||||||||||||| |||| | ||||||||||| |||||| |||| || || ||||||||| |||||||||| | |||||||| ||||| |||| | ||     
T  42805422 tcatcatcaacttaattcagactcatgcaacttggttaaataacatttgcagcataatcaaatcacatcaagcttaataacaattcattttcaacaattc 42805521  T
Q  119 cttgatcattcaacaacaattcaagtaa 146  Q
    |||||||||| || || |||||||||||    
T  42805522 cttgatcatttaataataattcaagtaa 42805549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 20232553 - 20232679
Alignment:
Q  20 tcatcatcaacttatt-cataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagttt 118  Q
    |||||||||||||||| || | | ||||||| ||||| || ||||||| || ||||||||| |||||||||| | |||||||| |||||||||| | ||     
T  20232553 tcatcatcaacttatttcagacttatgcaacatagtttaataacaattgcagcataatcaaatcacatcaagcttaataacaattcattctcaacaatta 20232652  T
Q  119 cttgatcattcaacaacaattcaagtaa 146  Q
     ||||||| ||||||| |||||||||||    
T  20232653 -ttgatcaatcaacaataattcaagtaa 20232679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 41 - 146
Target Start/End: Original strand, 10753387 - 10753488
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttgatcattcaacaacaattc 140  Q
    ||||||||||||||| |||||||||| || ||||||||||||| |||||| | |||||||| ||||| |||| |   |||||||||||||| || | |||    
T  10753387 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 10753482  T
Q  141 aagtaa 146  Q
    ||||||    
T  10753483 aagtaa 10753488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 23535691 - 23535564
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatca--agttaaataacaaatcattctcaatagtt 117  Q
    |||||||||||||||||| | |||||||||||||||||| ||||||  || ||||||||  ||| ||||  || | |||| ||| ||||| |||| | ||    
T  23535691 tcatcatcaacttattcagactcatgcaacttagttaaataacaatagcagcataatcagatcatatcaacagcttaatatcaattcatt-tcaacaatt 23535593  T
Q  118 tcttgatcattcaacaacaattcaagtaa 146  Q
    |||||||||||||| || |||| ||||||    
T  23535592 tcttgatcattcaataataattaaagtaa 23535564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 41666952 - 41667085
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41666952 tcatcatcaacttattcataatcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagttaaataacaaatcattctcaatagtttc 41667051  T
Q  120 ttgatcattcaacaacaattcaagtaagtataat 153  Q
    ||||||||||||||||||||||||||||||||||    
T  41667052 ttgatcattcaacaacaattcaagtaagtataat 41667085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 14 - 153
Target Start/End: Original strand, 26125205 - 26125339
Alignment:
Q  14 tggacatcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaat 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||      ||||||||| |||||| || |||||||||||||||||||||||    
T  26125205 tggagatcatcatcaacttattcataatcatgcaacttagttaaataacaag-----cataatcaaatcacataaacttaaataacaaatcattctcaat 26125299  T
Q  114 agtttcttgatcattcaacaacaattcaagtaagtataat 153  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26125300 agtttcttgatcattcaacaacaattcaagtaagtataat 26125339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 27263275 - 27263407
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    |||||||||||||||||||| ||||||||||||||| || ||||||| || ||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  27263275 tcatcatcaacttattcatattcatgcaacttagtttaataacaattgcagcataatcaaatcacatcaggttaaataacaaatcattctcaatagtttc 27263374  T
Q  120 ttgatcattcaacaa-caattcaagtaagtata 151  Q
    |||||||||||||||  |||||||| |||||||    
T  27263375 ttgatcattcaacaataaattcaagcaagtata 27263407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 60819 - 60949
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    |||||| ||||||||||||| ||||||||||||||| || ||||||| || |||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  60819 tcatcaacaacttattcatattcatgcaacttagtttaataacaattgcagcataatcaat-cacatcaggttaaataacaaatcattctcaatagtttc 60917  T
Q  120 ttgatcattcaacaacaattcaagtaagtata 151  Q
    ||||||||||||||| |||||||| |||||||    
T  60918 ttgatcattcaacaataattcaagcaagtata 60949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 23187078 - 23187204
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    |||||||||||||||||||| ||||| ||||| ||| || ||||||| || ||||||||| ||| |||| ||||||||| ||||||||||||||||||||    
T  23187078 tcatcatcaacttattcatactcatggaacttggtttaataacaattgcagcataatcaaatcatatcaggttaaataaaaaatcattctcaatagtttc 23187177  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||||| |||||||||||    
T  23187178 ttgatcattcaacaataattcaagtaa 23187204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 23598341 - 23598467
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    |||||||||||||||||||| ||||| ||||| ||| || ||||||| || ||||||||| ||| |||| ||||||||| ||||||||||||||||||||    
T  23598341 tcatcatcaacttattcatactcatggaacttggtttaataacaattgcagcataatcaaatcatatcaggttaaataaaaaatcattctcaatagtttc 23598440  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||||| |||||||||||    
T  23598441 ttgatcattcaacaataattcaagtaa 23598467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 19928605 - 19928483
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    |||||||||  |||||||||| ||||||||||||||||| |||| || || ||||||||| |||||||| ||| ||||||||||||||||||| | ||||    
T  19928605 tcatcatcagattattcataaacatgcaacttagttaaataacatttgcagcataatcaaatcacatcaggtttaataacaaatcattctcaacaatttc 19928506  T
Q  120 ttgatcattcaacaacaattcaa 142  Q
    ||||||||||||||| |||||||    
T  19928505 ttgatcattcaacaataattcaa 19928483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 18855562 - 18855438
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    |||||||||  |||||||||| |||||||||||||||||||||| || || ||||||||| |||||||||| | ||||||||||||||||||| |  |||    
T  18855562 tcatcatcagtttattcataa-catgcaacttagttaaacaacatttgcagcataatcaaatcacatcaagcttaataacaaatcattctcaaca-attc 18855465  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    ||||||| | ||||| |||||||||||    
T  18855464 ttgatcaattaacaataattcaagtaa 18855438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 31344880 - 31344967
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcatt 107  Q
    |||||||||||||||||||| |||||||||||||||||| || |||| || ||||||||| |||||||||| | |||||||| |||||    
T  31344880 tcatcatcaacttattcatactcatgcaacttagttaaataataattgcagcataatcaaatcacatcaagcttaataacaattcatt 31344967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 22461289 - 22461165
Alignment:
Q  23 tcatcaacttatt-cataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttctt 121  Q
    ||||||||||||| || | ||||||||| ||||| || ||||||| || ||||||||| |||| ||||| | ||||||||||||||||||| |  |||||    
T  22461289 tcatcaacttatttcagactcatgcaacatagtttaataacaattgcagcataatcaaatcacgtcaagcttaataacaaatcattctcaaca-attctt 22461191  T
Q  122 gatcattcaacaacaattcaagtaag 147  Q
    ||||| ||||||| ||||||||||||    
T  22461190 gatcaatcaacaataattcaagtaag 22461165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 41531087 - 41530986
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttgatcattcaacaacaattc 140  Q
    ||||||||||||||| |||||||||| || ||||||||||||| |||||| | |||||||| ||||| |||| |   |||||||||||||| || |||||    
T  41531087 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataataattc 41530992  T
Q  141 aagtaa 146  Q
    ||||||    
T  41530991 aagtaa 41530986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 30345074 - 30344973
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttgatcattcaacaacaattc 140  Q
    ||||||||||||||| |||||||||| || ||||||||||||| |||||| | |||||||| ||||| |||| |   |||||||||||||| || | |||    
T  30345074 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 30344979  T
Q  141 aagtaa 146  Q
    ||||||    
T  30344978 aagtaa 30344973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 146
Target Start/End: Original strand, 1283412 - 1283513
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttgatcattcaacaacaattc 140  Q
    ||||||||||||| | |||||||||| || ||||||||||||| |||||| | |||||||| ||||| |||| |   |||||||||||||| || | |||    
T  1283412 tcatgcaacttagattaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 1283507  T
Q  141 aagtaa 146  Q
    ||||||    
T  1283508 aagtaa 1283513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 114; Significance: 5e-58; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 1879 - 2012
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    |||||||||||||||||||||||||||||||||||||||  |||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1879 tcatcatcaacttattcataatcatgcaacttagttaaatcacaattgcagcataatcaaatcacatcaagttaaataacaaatcattctcaatagtttc 1978  T
Q  120 ttgatcattcaacaacaattcaagtaagtataat 153  Q
    ||||||||||||||||||||||||||||||||||    
T  1979 ttgatcattcaacaacaattcaagtaagtataat 2012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 5e-58; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 32605213 - 32605346
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| || || |||||| |||||||||||||||||||||||||||||||||||||||    
T  32605213 tcatcatcaacttattcataatcatgcaacttagttaaataacaattgcagcacaatcaaatcacatcaagttaaataacaaatcattctcaatagtttc 32605312  T
Q  120 ttgatcattcaacaacaattcaagtaagtataat 153  Q
    ||||||||||||||||||||||||||||||||||    
T  32605313 ttgatcattcaacaacaattcaagtaagtataat 32605346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 32598681 - 32598814
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| || || |||||| ||||||||||| |||||||||||||||||||||||||||    
T  32598681 tcatcatcaacttattcataatcatgcaacttagttaaataacaattgcagcacaatcaaatcacatcaagtcaaataacaaatcattctcaatagtttc 32598780  T
Q  120 ttgatcattcaacaacaattcaagtaagtataat 153  Q
    ||||||||||||||||||||||||||||||||||    
T  32598781 ttgatcattcaacaacaattcaagtaagtataat 32598814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 17055482 - 17055383
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| | ||||||| |||||||||||||||||||||||||||||    
T  17055482 tcatcatcaacttattcataatcatgcaacttagttaaataacaattgcagcataatcaaataacatcaacttaaataacaaatcattctcaatagtttc 17055383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 23847118 - 23846992
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||| ||||||||||| ||||||||||||||||| |||| || || ||||||||| ||||| ||  || ||||||||||||||||||| | ||||    
T  23847118 tcatcatcagcttattcataaacatgcaacttagttaaataacatttgcagcataatcaaatcacaacagatttaataacaaatcattctcaacaatttc 23847019  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||||| |||||||||||    
T  23847018 ttgatcattcaacaataattcaagtaa 23846992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 30308856 - 30308730
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    |||||||||||||||||||| |||||||| |||||| || ||||||| |||||||||||| || |||||  || ||||||||||||||| ||| | ||||    
T  30308856 tcatcatcaacttattcatactcatgcaaattagtttaataacaattgcaacataatcaaatcccatcagatttaataacaaatcattcacaacaatttc 30308757  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||||| |||||||||||    
T  30308756 ttgatcattcaacaataattcaagtaa 30308730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 15531892 - 15532018
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||| ||||| ||||  ||||||||||||||||| |||| || || ||||||||| ||||| || ||| |||||||| |||||||||| | ||||    
T  15531892 tcatcatcagcttatacatagacatgcaacttagttaaataacatttgcagcataatcaaatcacaacaggtttaataacaattcattctcaacaatttc 15531991  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||||| |||||||||||    
T  15531992 ttgatcattcaacaataattcaagtaa 15532018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 16231579 - 16231452
Alignment:
Q  20 tcatcatcaactta-ttcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagttt 118  Q
    |||||||||||||| |||| | |||||||||||||||||| ||||||| || ||||||||| |||||||||| | |||||||| ||||| |||| |  ||    
T  16231579 tcatcatcaacttaattcagactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaattcattttcaacaaatt 16231480  T
Q  119 cttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||| || |||||||||||    
T  16231479 cttgatcattcaataataattcaagtaa 16231452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 21383656 - 21383743
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcatt 107  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||| |||||||||| | |||||||| |||||    
T  21383656 tcatcatcaacttattcatactcatgcaacttagttaaataacaattgcaacataatcaaatcacatcaagcttaataacaattcatt 21383743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 23834174 - 23834301
Alignment:
Q  20 tcatcatcaactta-ttcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagttt 118  Q
    |||||||||||||| |||| | ||||||||| ||||| || ||||||| || |||| |||| |||||||||| | ||||||||||||||||||| | |||    
T  23834174 tcatcatcaacttaattcagactcatgcaacatagtttaataacaattgcatcatagtcaaatcacatcaagcttaataacaaatcattctcaacaattt 23834273  T
Q  119 cttgatcattcaacaacaattcaagtaa 146  Q
    |||| ||||||||||| |||||||||||    
T  23834274 cttggtcattcaacaataattcaagtaa 23834301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 15538451 - 15538577
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||| ||||| ||||  ||||||||||||||||| |||| || || ||||||||| ||||| || ||| |||||||| |||||||||| | ||||    
T  15538451 tcatcatcagcttatacatagacatgcaacttagttaaataacatttgcagcataatcaaatcacaacaggtttaataacaattcattctcaacaatttc 15538550  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||||| || ||||||||    
T  15538551 ttgatcattcaacaataactcaagtaa 15538577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 21387076 - 21387163
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcatt 107  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||| || ||||||||| |||||||||| | |||||||| |||||    
T  21387076 tcatcatcaacttattcatactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaattcatt 21387163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 14398211 - 14398124
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcatt 107  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||| || ||||||||| || ||| ||| | |||||||| |||||    
T  14398211 tcatcatcaacttattcatactcatgcaacttagttaaataacaattgcagcataatcaaatcgcataaagcttaataacaattcatt 14398124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 17828685 - 17828593
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaa 112  Q
    ||||||||| ||||| ||||  ||||||||||||||||  |||| || || ||||||||| |||||||||| | |||||||||||||||||||    
T  17828685 tcatcatcagcttatacatagacatgcaacttagttaattaacatttgcagcataatcaaatcacatcaagcttaataacaaatcattctcaa 17828593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 24445609 - 24445517
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaa 112  Q
    ||||||||| ||||| ||||  ||||||||||||||||| |||| || || ||||||||| |||||||| |||  ||||||||||||||||||    
T  24445609 tcatcatcagcttatacatagacatgcaacttagttaaataacatttacagcataatcaaatcacatcaggtttcataacaaatcattctcaa 24445517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 22044886 - 22045013
Alignment:
Q  20 tcatcatcaactta-ttcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagttt 118  Q
    ||||| |||||||| |||| | |||||||||||||||  | ||||||| || || |||||| |||||||||| | |||||||| ||||| |||| | |||    
T  22044886 tcatcgtcaacttaattcagactcatgcaacttagtttgataacaattgcagcacaatcaaatcacatcaagcttaataacaattcattttcaacaattt 22044985  T
Q  119 cttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||| | || |||||||||||    
T  22044986 cttgatcattccataataattcaagtaa 22045013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 18862728 - 18862627
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttgatcattcaacaacaattc 140  Q
    ||||||||||||||| |||||||||| || ||||||||||||| |||||| | |||||||| ||||| |||| |   |||||||||||||| || | |||    
T  18862728 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 18862633  T
Q  141 aagtaa 146  Q
    ||||||    
T  18862632 aagtaa 18862627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 21828097 - 21827996
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttgatcattcaacaacaattc 140  Q
    ||||||||||||||| |||||||||| || ||||||||||||| |||||| | |||||||| ||||| |||| |   |||||||||||||| || | |||    
T  21828097 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 21828002  T
Q  141 aagtaa 146  Q
    ||||||    
T  21828001 aagtaa 21827996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 21410973 - 21411039
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcatt 107  Q
    ||||||||||||||| |||||||||| || ||||||||||||| |||||| | |||||||| |||||    
T  21410973 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt 21411039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 21805465 - 21805531
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcatt 107  Q
    ||||||||||||||| |||||||||| || ||||||||||||| |||||| | |||||||| |||||    
T  21805465 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt 21805531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 5e-58; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 14708737 - 14708604
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  14708737 tcatcatcaacttattcataatcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagttagataacaaatcattctcaatagtttc 14708638  T
Q  120 ttgatcattcaacaacaattcaagtaagtataat 153  Q
    ||||||||||||||||||||||||||||||||||    
T  14708637 ttgatcattcaacaacaattcaagtaagtataat 14708604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 28569547 - 28569414
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  28569547 tcatcatcaacttattcataatcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaacttaaataacaaatcattctcaatagtttc 28569448  T
Q  120 ttgatcattcaacaacaattcaagtaagtataat 153  Q
    ||||||||||||||||||||||||| ||||||||    
T  28569447 ttgatcattcaacaacaattcaagtgagtataat 28569414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 42997553 - 42997420
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||||||||||||||||||||||||| ||||||| |||| || || ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42997553 tcatcatcaacttattcataatcatgcaactcagttaaataacatttgcagcataatcaaatcacatcaagttaaataacaaatcattctcaatagtttc 42997454  T
Q  120 ttgatcattcaacaacaattcaagtaagtataat 153  Q
    ||||||||| ||||||||||||||||||||||||    
T  42997453 ttgatcatttaacaacaattcaagtaagtataat 42997420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 23 - 153
Target Start/End: Original strand, 15224800 - 15224930
Alignment:
Q  23 tcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttg 122  Q
    ||||||||||||||||| || ||||||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||||||| | |||||||||    
T  15224800 tcatcaacttattcatattcttgcaacttagttaaataacaattgcagcataatcaaatcacatcaagttaaataacaaatcattctcgaaagtttcttg 15224899  T
Q  123 atcattcaacaacaattcaagtaagtataat 153  Q
    ||||||||||||||||||||||| |||||||    
T  15224900 atcattcaacaacaattcaagtaggtataat 15224930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 3412801 - 3412923
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    |||||||||||||||||||| ||||||||||||||| || ||||||  || ||||||||| |||||||| ||||||||||||||||||||||||| ||||    
T  3412801 tcatcatcaacttattcatactcatgcaacttagtttaataacaatagcagcataatcaaatcacatcaggttaaataacaaatcattctcaataatttc 3412900  T
Q  120 ttgatcattcaacaacaattcaa 142  Q
    ||||||||||||||| |||||||    
T  3412901 ttgatcattcaacaataattcaa 3412923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 18236894 - 18237020
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||| || ||||||||| |||||||| ||| ||||||||||||||||||| | ||||    
T  18236894 tcatcatcaacttattcatactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaggtttaataacaaatcattctcaacaatttc 18236993  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    || |||||||||||| |||||||||||    
T  18236994 ttaatcattcaacaataattcaagtaa 18237020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 26243768 - 26243642
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||| ||||||||||| ||||||||||||||||| |||| || || ||||||||| |||||||||| | ||||||||||||||||||| | ||||    
T  26243768 tcatcatcagcttattcataaacatgcaacttagttaaataacatttgcagcataatcaaatcacatcaagcttaataacaaatcattctcaacaatttc 26243669  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||||| |||||||||||    
T  26243668 ttgatcattcaacaataattcaagtaa 26243642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 16243503 - 16243377
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||| ||||||||||  ||||||||||||||||| |||| || || ||||||||| |||||||| ||| ||||||||||||||||||| | ||||    
T  16243503 tcatcatcagcttattcatacacatgcaacttagttaaataacatttgcagcataatcaaatcacatcaggtttaataacaaatcattctcaacaatttc 16243404  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||||| |||||||||||    
T  16243403 ttgatcattcaacaataattcaagtaa 16243377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 19757704 - 19757578
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||| ||||||||||| ||||||||||||||||| |||| || || ||||||||| ||||| || ||| ||||||||||||||||||| | ||||    
T  19757704 tcatcatcagcttattcataaacatgcaacttagttaaataacatttgcagcataatcaaatcacaacaggtttaataacaaatcattctcaacaatttc 19757605  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||||| |||||||||||    
T  19757604 ttgatcattcaacaataattcaagtaa 19757578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 19782102 - 19782228
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||| ||||||||||| ||||||||||||||||| |||| || || ||||||||| ||||| || ||| ||||||||||||||||||| | ||||    
T  19782102 tcatcatcagcttattcataaacatgcaacttagttaaataacatttgcagcataatcaaatcacaacaggtttaataacaaatcattctcaacaatttc 19782201  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||||| |||||||||||    
T  19782202 ttgatcattcaacaataattcaagtaa 19782228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 2014781 - 2014907
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||| ||||||||||  ||||||||||||||||| |||| || || ||||||||| |||||||| ||| ||||||||||||||| ||| | ||||    
T  2014781 tcatcatcagcttattcatacacatgcaacttagttaaataacatttgcagcataatcaaatcacatcaggtttaataacaaatcattcgcaacaatttc 2014880  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    |||||||||| |||| |||||||||||    
T  2014881 ttgatcattccacaataattcaagtaa 2014907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 1951865 - 1951738
Alignment:
Q  20 tcatcatcaactta-ttcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagttt 118  Q
    |||||||||||||| |||| | |||||||||||||||||| ||||||| || ||||||||| |||||||||| | |||||||| ||||| |||| | |||    
T  1951865 tcatcatcaacttaattcagactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaattcattttcaacaattt 1951766  T
Q  119 cttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||| || |||||||||||    
T  1951765 cttgatcattcaataataattcaagtaa 1951738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 23139274 - 23139398
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||| ||||||||||| ||||||||||||||||| |||| || || ||||||||| |||||||||| | ||||||||||||||||||| |  |||    
T  23139274 tcatcatcagcttattcataaacatgcaacttagttaaataacatttgcagcataatcaaatcacatcaagcttaataacaaatcattctcaaca-attc 23139372  T
Q  120 ttgatcattcaacaacaattcaagta 145  Q
    ||||||| | ||||| ||||||||||    
T  23139373 ttgatcaattaacaataattcaagta 23139398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 18602834 - 18602712
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||| |||||||||||||| ||||| ||||||||| |  ||||||| || ||||||||| |||||||| |||||| |||||||||||||||||  ||||    
T  18602834 tcatcgtcaacttattcatactcatgaaacttagtttagtaacaattgcagcataatcaaatcacatcaggttaaacaacaaatcattctcaatcatttc 18602735  T
Q  120 ttgatcattcaacaacaattcaa 142  Q
    |  |||||||||||| |||||||    
T  18602734 tcaatcattcaacaataattcaa 18602712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 18222482 - 18222355
Alignment:
Q  20 tcatcatcaactta-ttcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagttt 118  Q
    ||||||| |||||| |||| | |||||||||||||||||| ||||||| || ||||||||| |||||||||| | |||||||| ||||| |||| | ||     
T  18222482 tcatcatgaacttaattcagactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaattcattttcaacaattc 18222383  T
Q  119 cttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||| || |||||||||||    
T  18222382 cttgatcattcaataataattcaagtaa 18222355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 17152590 - 17152464
Alignment:
Q  20 tcatcatcaactta-ttcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagttt 118  Q
    |||||||||||||| |||| | |||||||||||||||||| |||| || || ||||||||| |||||||||| | |||||||| ||||| |||| | ||     
T  17152590 tcatcatcaacttaattcagactcatgcaacttagttaaataacatttgcagcataatcaaatcacatcaagcttaataacaattcatt-tcaacaattc 17152492  T
Q  119 cttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||| || |||||||||||    
T  17152491 cttgatcattcaataataattcaagtaa 17152464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 43256515 - 43256428
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcatt 107  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||  | ||||||||| |||||||||| | |||||||| |||||    
T  43256515 tcatcatcaacttattcatactcatgcaacttagttaaataacaattgtagcataatcaaatcacatcaagcttaataacaattcatt 43256428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 18228957 - 18228830
Alignment:
Q  20 tcatcatcaactta-ttcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagttt 118  Q
    |||||||||||||| |||| | |||||||||||||||||| || |||| || ||||||||| |||||||||| |  ||||||| |||||  ||| | ||     
T  18228957 tcatcatcaacttaattcagactcatgcaacttagttaaataaaaattgcagcataatcaaatcacatcaagcttcataacaattcatttccaacaattc 18228858  T
Q  119 cttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||| || |||||||||||    
T  18228857 cttgatcattcaataataattcaagtaa 18228830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 45938151 - 45938243
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaa 112  Q
    ||||||||| ||||| ||||  |||||| |||||||||| |||| || || ||||||||| |||||||||| | |||||||||||||||||||    
T  45938151 tcatcatcagcttatacatagacatgcatcttagttaaataacatttgcagcataatcaaatcacatcaagcttaataacaaatcattctcaa 45938243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 22634526 - 22634398
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatca--agttaaataacaaatcattctcaatagtt 117  Q
    |||||||||||||||||| |  ||||||||||||||||  ||||||  || ||||||||  ||||||||  || | |||| ||| ||||| |||| | ||    
T  22634526 tcatcatcaacttattcagacgcatgcaacttagttaattaacaatagcagcataatcagatcacatcaacagcttaatatcaattcattttcaacaatt 22634427  T
Q  118 tcttgatcattcaacaacaattcaagtaa 146  Q
    |||||||||||||| || |||||||||||    
T  22634426 tcttgatcattcaataataattcaagtaa 22634398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 41 - 146
Target Start/End: Original strand, 10712876 - 10712977
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttgatcattcaacaacaattc 140  Q
    ||||||||||||||| |||||||||| || ||||||||||||| |||||| | |||||||| ||||| |||| |   |||||||||||||| || | |||    
T  10712876 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 10712971  T
Q  141 aagtaa 146  Q
    ||||||    
T  10712972 aagtaa 10712977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 41 - 146
Target Start/End: Original strand, 10926646 - 10926747
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttgatcattcaacaacaattc 140  Q
    ||||||||||||||| |||||||||| || ||||||||||||| |||||| | |||||||| ||||| |||| |   |||||||||||||| || | |||    
T  10926646 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 10926741  T
Q  141 aagtaa 146  Q
    ||||||    
T  10926742 aagtaa 10926747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 18609406 - 18609319
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcatt 107  Q
    ||||| |||||||||||||| ||||| ||||||||| |  ||||||| || ||||||||| |||||| | |||||| |||||||||||    
T  18609406 tcatcgtcaacttattcatactcatgaaacttagtttagtaacaattgcagcataatcaaatcacatgaggttaaacaacaaatcatt 18609319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 9530437 - 9530562
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    |||||||||  || |||||||  ||||||||||||||||  ||| || || ||||||||| |||||||||| | ||||| ||||||||||||| |  |||    
T  9530437 tcatcatcagtttgttcataaaaatgcaacttagttaaatgacatttgcagcataatcaaatcacatcaagcttaataataaatcattctcaaca-attc 9530535  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    ||||||| | ||||| ||||| |||||    
T  9530536 ttgatcaattaacaataattcgagtaa 9530562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 14954250 - 14954190
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaa 101  Q
    ||||||||||||||| |||||||||| || ||||||||||||| |||||| | ||||||||    
T  14954250 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaa 14954190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 25689893 - 25689953
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaa 101  Q
    ||||||||||||||| |||||||||| || ||||||||||||| |||||| | ||||||||    
T  25689893 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaa 25689953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 12487734 - 12487794
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaa 101  Q
    ||||||||||||||| |||||||||| || |||||||||||||  ||||| | ||||||||    
T  12487734 tcatgcaacttagtttaacaacaattacagcataatcaattcatgtcaagcttaataacaa 12487794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0585 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: scaffold0585
Description:

Target: scaffold0585; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 20 - 149
Target Start/End: Original strand, 9337 - 9466
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9337 tcatcatcaacttattcataatcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagttaaataacaaatcattctcaatagtttc 9436  T
Q  120 ttgatcattcaacaacaattcaagtaagta 149  Q
    ||||||||| |||||||| |||||||||||    
T  9437 ttgatcatttaacaacaactcaagtaagta 9466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 15340 - 15473
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||| || ||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  15340 tcatcatcaacttattcataattatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagttaaataacaaatcattctcattagtttc 15439  T
Q  120 ttgatcattcaacaacaattcaagtaagtataat 153  Q
    |||||||| |||||||||||||||||||||||||    
T  15440 ttgatcatccaacaacaattcaagtaagtataat 15473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 3e-53; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 16696788 - 16696921
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| || ||||| ||| ||||||||||||||| |||||| ||||||||||||||||    
T  16696788 tcatcatcaacttattcataatcatgcaacttagttaaataacaattgcagcataaacaaatcacatcaagttaaagaacaaaacattctcaatagtttc 16696887  T
Q  120 ttgatcattcaacaacaattcaagtaagtataat 153  Q
    ||||||||||||||||||||||||||||||||||    
T  16696888 ttgatcattcaacaacaattcaagtaagtataat 16696921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 4589294 - 4589164
Alignment:
Q  23 tcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttg 122  Q
    ||||||||||||||||| || ||||||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||||||| | |||||||||    
T  4589294 tcatcaacttattcatactcttgcaacttagttaaataacaattgcagcataatcaaatcacatcaagttaaataacaaatcattctcgaaagtttcttg 4589195  T
Q  123 atcattcaacaacaattcaagtaagtataat 153  Q
    ||||||||||||||||||||||| |||||||    
T  4589194 atcattcaacaacaattcaagtaggtataat 4589164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 23 - 153
Target Start/End: Original strand, 19775353 - 19775483
Alignment:
Q  23 tcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttg 122  Q
    ||||||||||||||||| || ||||||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||||||| | |||||||||    
T  19775353 tcatcaacttattcatactcttgcaacttagttaaataacaattgcagcataatcaaatcacatcaagttaaataacaaatcattctcgaaagtttcttg 19775452  T
Q  123 atcattcaacaacaattcaagtaagtataat 153  Q
    ||||||||||||||||||||||| |||||||    
T  19775453 atcattcaacaacaattcaagtaggtataat 19775483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 16798157 - 16798031
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    |||||||||||||||||||| ||||||||| ||||| || ||||| | |||||||||||| |||||||||  | |||||||||||||| |||| | ||||    
T  16798157 tcatcatcaacttattcatactcatgcaacatagtttaataacaagtgcaacataatcaaatcacatcaaacttaataacaaatcattttcaacaatttc 16798058  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||||| |||||||||||    
T  16798057 ttgatcattcaacaataattcaagtaa 16798031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 38814387 - 38814513
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||| |||||| |||  ||||||||||||||||| |||| || || ||||||||| ||||| || ||| ||||||||||||||||||| | ||||    
T  38814387 tcatcatcagcttattgatagacatgcaacttagttaaataacatttgcagcataatcaaatcacaacaggtttaataacaaatcattctcaacaatttc 38814486  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||||| |||||||||||    
T  38814487 ttgatcattcaacaataattcaagtaa 38814513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 3833677 - 3833803
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||| ||||||||||  ||||||||||||||||| |||| || || ||||||||| ||||| || ||| |||||||| |||||||||| | || |    
T  3833677 tcatcatcagcttattcatagacatgcaacttagttaaataacatttgcagcataatcaaatcacaacaggtttaataacaagtcattctcaacaattgc 3833776  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||||| |||||||||||    
T  3833777 ttgatcattcaacaataattcaagtaa 3833803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 16808984 - 16808858
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    |||||||||||||||||||| ||||||||  ||||| || ||||| | |||||||||||| |||||||||| | ||||||||||||||  ||| | ||||    
T  16808984 tcatcatcaacttattcatactcatgcaatatagtttaataacaagtgcaacataatcaaatcacatcaagcttaataacaaatcatttgcaacaatttc 16808885  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    |||| |||||||||| |||||||||||    
T  16808884 ttgaccattcaacaataattcaagtaa 16808858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 12339469 - 12339556
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcatt 107  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||| || |||||||||||| ||||||||| |||||||| |||||    
T  12339469 tcatcatcaacttattcatactcatgcaacttagttaaataacaattgcagcataatcaattctcatcaagtttaataacaattcatt 12339556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 8489574 - 8489487
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcatt 107  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||| || ||||||||| |||||||||| | |||||||| |||||    
T  8489574 tcatcatcaacttattcatactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaattcatt 8489487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 15464868 - 15464955
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcatt 107  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||| || ||||||||| |||||||||| | |||||||| |||||    
T  15464868 tcatcatcaacttattcatactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaattcatt 15464955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 23 - 144
Target Start/End: Complemental strand, 15850183 - 15850063
Alignment:
Q  23 tcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttg 122  Q
    |||||||||||||||   |||||||||||||||||| ||||||| || ||||||||  ||| |||||||| |||||||| ||||| || | | |||||||    
T  15850183 tcatcaacttattcagtctcatgcaacttagttaaataacaattgcagcataatcagatcatatcaagtttaataacaattcattttc-acaatttcttg 15850085  T
Q  123 atcattcaacaacaattcaagt 144  Q
    |||||||||||| |||||||||    
T  15850084 atcattcaacaataattcaagt 15850063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 5223067 - 5223154
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcatt 107  Q
    |||||||||||||||||||| |||| ||||||||||||| ||||||| || ||||||||| |||||||||| | |||||||| |||||    
T  5223067 tcatcatcaacttattcatactcatacaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaattcatt 5223154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 23 - 146
Target Start/End: Complemental strand, 16750689 - 16750570
Alignment:
Q  23 tcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttg 122  Q
    ||||||||||||||||| || ||||||||||||||| ||||||| || ||||||||||||| |||||| | |||||||| ||||| |||| |   |||||    
T  16750689 tcatcaacttattcatattcttgcaacttagttaaataacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttg 16750594  T
Q  123 atcattcaacaacaattcaagtaa 146  Q
    ||||||||| || | |||||||||    
T  16750593 atcattcaataatatttcaagtaa 16750570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 23 - 147
Target Start/End: Original strand, 17241978 - 17242102
Alignment:
Q  23 tcatcaacttatt-cataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttctt 121  Q
    ||||||||||||| || | ||||||||| ||||| || ||||||| || ||||||||| |||| ||||| | ||||||||||||||||||| |  |||||    
T  17241978 tcatcaacttatttcagactcatgcaacatagtttaataacaattgcagcataatcaaatcacgtcaagcttaataacaaatcattctcaaca-attctt 17242076  T
Q  122 gatcattcaacaacaattcaagtaag 147  Q
    ||||| ||||||| ||||||||||||    
T  17242077 gatcaatcaacaataattcaagtaag 17242102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 31097656 - 31097532
Alignment:
Q  23 tcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaa--gttaaataacaaatcattctcaatagtttct 120  Q
    ||||||||||||||| | ||||||||| |||||||  ||||||| || ||||||||  |||||||||  | | |||||||| ||||| |||| | |||||    
T  31097656 tcatcaacttattcagactcatgcaacatagttaattaacaattgcagcataatcagatcacatcaatagcttaataacaattcattttcaacaatttct 31097557  T
Q  121 tgatcattcaacaacaattcaagta 145  Q
    |||||||||||||| ||||||||||    
T  31097556 tgatcattcaacaataattcaagta 31097532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 11854422 - 11854507
Alignment:
Q  22 atcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcatt 107  Q
    |||| ||||||||||||| |||||||||||||||||| ||||||| |  ||||||||| |||||||||| | |||||||| |||||    
T  11854422 atcaacaacttattcatactcatgcaacttagttaaataacaattgcggcataatcaaatcacatcaagcttaataacaattcatt 11854507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 1598582 - 1598490
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaag-ttaaataacaaatcattctcaa 112  Q
    ||||||||| ||||| ||||  ||||||||||||||||| ||| ||| || ||||||||| |||||||||| ||||||||||||||||| ||||    
T  1598582 tcatcatcagcttatacatagacatgcaacttagttaaataac-attgcagcataatcaaatcacatcaagcttaaataacaaatcattttcaa 1598490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 15482665 - 15482793
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatca--agttaaataacaaatcattctcaatagtt 117  Q
    |||||||||||||||||| | |||||||||||||||||  ||||||  || ||||||||  ||||||||  || | |||| ||| ||||| |||| | ||    
T  15482665 tcatcatcaacttattcagactcatgcaacttagttaattaacaatagcagcataatcagatcacatcaacagcttaatatcaattcattttcaacaatt 15482764  T
Q  118 tcttgatcattcaacaacaattcaagtaa 146  Q
    |||||| ||||||| || |||||||||||    
T  15482765 tcttgagcattcaataataattcaagtaa 15482793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 15942007 - 15941915
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaa 112  Q
    ||||||||| ||||| | ||  ||||||||||||||||| |||| || || ||||||||| ||||||||| || |||||||||||||| ||||    
T  15942007 tcatcatcagcttatacttagacatgcaacttagttaaataacatttgcagcataatcaaatcacatcaaatttaataacaaatcattttcaa 15941915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 4111332 - 4111231
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttgatcattcaacaacaattc 140  Q
    ||||||||||||||| |||||||||| || ||||||||||||| |||||| | |||||||| ||||| |||| |   |||||||||||||| || | |||    
T  4111332 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 4111237  T
Q  141 aagtaa 146  Q
    ||||||    
T  4111236 aagtaa 4111231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 41 - 146
Target Start/End: Original strand, 15964995 - 15965096
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttgatcattcaacaacaattc 140  Q
    ||||||||||||||| |||||||||| || ||||||||||||| |||||| | |||||||| ||||| |||| |   |||||||||||||| || | |||    
T  15964995 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 15965090  T
Q  141 aagtaa 146  Q
    ||||||    
T  15965091 aagtaa 15965096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 41 - 146
Target Start/End: Original strand, 15968919 - 15969020
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttgatcattcaacaacaattc 140  Q
    ||||||||||||||| |||||||||| || ||||||||||||| |||||| | |||||||| ||||| |||| |   |||||||||||||| || | |||    
T  15968919 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 15969014  T
Q  141 aagtaa 146  Q
    ||||||    
T  15969015 aagtaa 15969020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 41 - 146
Target Start/End: Original strand, 15972843 - 15972944
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttgatcattcaacaacaattc 140  Q
    ||||||||||||||| |||||||||| || ||||||||||||| |||||| | |||||||| ||||| |||| |   |||||||||||||| || | |||    
T  15972843 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 15972938  T
Q  141 aagtaa 146  Q
    ||||||    
T  15972939 aagtaa 15972944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 41 - 146
Target Start/End: Original strand, 19775791 - 19775892
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttgatcattcaacaacaattc 140  Q
    ||||||||||||||| |||||||||| || ||||||||||||| |||||| | |||||||| ||||| |||| |   |||||||||||||| || | |||    
T  19775791 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 19775886  T
Q  141 aagtaa 146  Q
    ||||||    
T  19775887 aagtaa 19775892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 4107480 - 4107414
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcatt 107  Q
    ||||||||||||||| |||||||||| || ||||||||||||| |||||| | |||||||| |||||    
T  4107480 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt 4107414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 11300869 - 11300781
Alignment:
Q  20 tcatcatcaacttatt-cataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcatt 107  Q
    |||||||||||||||| || | |||||||||||||||||| |||||||  | ||||||||| |||||| | ||| |||||||| |||||    
T  11300869 tcatcatcaacttatttcagactcatgcaacttagttaaataacaattgtagcataatcaaatcacataacgtttaataacaattcatt 11300781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 37439719 - 37439618
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttgatcattcaacaacaattc 140  Q
    ||||||||||||||| ||||||||||  | ||||||||||||| |||||| | |||||||| ||||| |||| |   |||||||||||||| || | |||    
T  37439719 tcatgcaacttagtttaacaacaattgtagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 37439624  T
Q  141 aagtaa 146  Q
    ||||||    
T  37439623 aagtaa 37439618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 14665427 - 14665475
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaa 89  Q
    |||||||||||||||||| ||||||  |||||||||||  |||||||||    
T  14665427 tcatgcaacttagttaaataacaatagcaacataatcagatcacatcaa 14665475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 5e-52; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 16275494 - 16275625
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  16275494 tcatcatcaacttattcataatcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagttaaataacaaatcatactcaatagtttc 16275593  T
Q  120 ttgatcattcaacaacaattcaagtaagtata 151  Q
    ||||||||||||||||| |||||| |||||||    
T  16275594 ttgatcattcaacaacagttcaagcaagtata 16275625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 14216917 - 14217048
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    |||||||||||||||||||| ||||||||||||||| || ||||||| || ||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  14216917 tcatcatcaacttattcatattcatgcaacttagttcaataacaattgcagcataatcaaatcacatcaggttaaataacaaatcattctcaatagtttc 14217016  T
Q  120 ttgatcattcaacaacaattcaagtaagtata 151  Q
    ||||||||||||||| |||||||| |||||||    
T  14217017 ttgatcattcaacaataattcaagcaagtata 14217048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 15728327 - 15728458
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    |||||||||||||||||||| ||||||||||||||| || ||||||| || ||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  15728327 tcatcatcaacttattcatattcatgcaacttagtttaataacaattgcagcataatcaaatcacatcaggttaaataacaaatcattctcaatagtttc 15728426  T
Q  120 ttgatcattcaacaacaattcaagtaagtata 151  Q
    ||||||||||||||| |||||||| |||||||    
T  15728427 ttgatcattcaacaataattcaagcaagtata 15728458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 35151608 - 35151741
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| |||||||| ||||||||||||||||| |||||||| |||    
T  35151608 tcatcatcaacttattcataatcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaggttaaataacaaatcatactcaatagcttc 35151707  T
Q  120 ttgatcattcaacaacaattcaagtaagtataat 153  Q
    || |||||||||||| |||||||| |||||||||    
T  35151708 ttcatcattcaacaataattcaagcaagtataat 35151741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 8917429 - 8917555
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    |||||||||||||||||||| ||||||||||||||| || ||||||| |||||||||||| |||||||| ||| ||||||||||||||| ||| | ||||    
T  8917429 tcatcatcaacttattcatactcatgcaacttagtttaataacaattgcaacataatcaaatcacatcaggtttaataacaaatcattcacaacaatttc 8917528  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||||| |||||||||||    
T  8917529 ttgatcattcaacaataattcaagtaa 8917555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 18556975 - 18557101
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||||||||| |||| |||||||||||||||||| |||| || || ||||||||| |||||||| ||| |||| |||||||||||||||||||||    
T  18556975 tcatcatcaacttatacatagtcatgcaacttagttaaataacatttgcagcataatcaaatcacatcaggttcaatagcaaatcattctcaatagtttc 18557074  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||| ||||| |||||||||||    
T  18557075 ttgatcatttaacaataattcaagtaa 18557101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 16724733 - 16724601
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    |||||||||||||||||||| ||||||||||||||| || ||||||| || |||||| || |||||||| |||||||||||| ||||||||||||| |||    
T  16724733 tcatcatcaacttattcatactcatgcaacttagtttaataacaattgcagcataatgaaatcacatcaggttaaataacaagtcattctcaatag-ttc 16724635  T
Q  120 ttgatcattcaacaacaattcaagtaagtataat 153  Q
    ||||||||||||||| ||||||| ||| ||||||    
T  16724634 ttgatcattcaacaataattcaaataaatataat 16724601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 17701747 - 17701615
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    |||||||||||||||||||| ||||||||||||||| || ||||||| || |||||| || |||||||| |||||||||||| ||||||||||||| |||    
T  17701747 tcatcatcaacttattcatactcatgcaacttagtttaataacaattgcagcataatgaaatcacatcaggttaaataacaagtcattctcaatag-ttc 17701649  T
Q  120 ttgatcattcaacaacaattcaagtaagtataat 153  Q
    ||||||||||||||| ||||||| ||| ||||||    
T  17701648 ttgatcattcaacaataattcaaataaatataat 17701615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 13149157 - 13149283
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||| ||||||||||  ||||||||||||||||| |||| || || ||||||||| |||||||| ||| ||||||||||||||||||| | ||||    
T  13149157 tcatcatcagcttattcatacacatgcaacttagttaaataacatttgcagcataatcaaatcacatcaggtttaataacaaatcattctcaacaatttc 13149256  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||||| |||||||||||    
T  13149257 ttgatcattcaacaataattcaagtaa 13149283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 13461763 - 13461889
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    |||||||||||||||||||| |||||||| |||||| ||  |||||| || ||||||||| |||||||| ||| ||||||||||||||| ||| | ||||    
T  13461763 tcatcatcaacttattcatactcatgcaaattagtttaattacaattgcagcataatcaaatcacatcaggtttaataacaaatcattcacaacaatttc 13461862  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||||| |||||||||||    
T  13461863 ttgatcattcaacaataattcaagtaa 13461889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 9593347 - 9593474
Alignment:
Q  20 tcatcatcaactta-ttcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagttt 118  Q
    |||||||||||||| |||| | |||||||||||||||||| ||||||| || ||||||||| |||||||||| | |||||||| ||||| |||| | |||    
T  9593347 tcatcatcaacttaattcagactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaattcattttcaacaattt 9593446  T
Q  119 cttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||| || |||||||||||    
T  9593447 cttgatcattcaataataattcaagtaa 9593474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 31 - 146
Target Start/End: Original strand, 11987225 - 11987340
Alignment:
Q  31 ttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttgatcattca 130  Q
    ||||||| | |||||||||||||||||| ||||||| || ||||||||| |||||||||| | |||||||||||||| |||| |||||||||||||||||    
T  11987225 ttattcagactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaaatcattttcaacagtttcttgatcattca 11987324  T
Q  131 acaacaattcaagtaa 146  Q
    | || || ||||||||    
T  11987325 ataataaatcaagtaa 11987340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 19162 - 19035
Alignment:
Q  20 tcatcatcaactta-ttcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagttt 118  Q
    |||||||||||||| |||| | |||||||||||||||||| |||| || || ||||||||| |||||||||| | |||||||| ||||| |||| | ||     
T  19162 tcatcatcaacttaattcagactcatgcaacttagttaaataacatttgcagcataatcaaatcacatcaagcttaataacaattcattttcaacaattc 19063  T
Q  119 cttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||| || |||||||||||    
T  19062 cttgatcattcaataataattcaagtaa 19035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 13918882 - 13918795
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcatt 107  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||| || ||||||||| |||||||||| | |||||||| |||||    
T  13918882 tcatcatcaacttattcatactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaattcatt 13918795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 16457439 - 16457334
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttgatcattcaacaacaattc 140  Q
    ||||||||| ||||| || ||||||| || ||||||||| |||||||||| | |||||||||||||| |||| | |||||||||||||||| || |||||    
T  16457439 tcatgcaacatagtttaataacaattgcagcataatcaaatcacatcaagcttaataacaaatcattttcaacaatttcttgatcattcaataataattc 16457340  T
Q  141 aagtaa 146  Q
    ||||||    
T  16457339 aagtaa 16457334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 1859188 - 1859107
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaa 101  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||| || ||||||||| ||||| |||| | ||||||||    
T  1859188 tcatcatcaacttattcatactcatgcaacttagttaaataacaattgcagcataatcaaatcacaacaagcttaataacaa 1859107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 23 - 146
Target Start/End: Original strand, 18425443 - 18425562
Alignment:
Q  23 tcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttg 122  Q
    ||||||||||||||||| || ||||||||||||||| ||||||| || ||||||||||||| |||||| | |||||||| ||||| |||| |   |||||    
T  18425443 tcatcaacttattcatattcttgcaacttagttaaataacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttg 18425538  T
Q  123 atcattcaacaacaattcaagtaa 146  Q
    ||||||||| || | |||||||||    
T  18425539 atcattcaataatatttcaagtaa 18425562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 25927605 - 25927536
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaa 89  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||| || ||||||||| |||||||||    
T  25927605 tcatcatcaacttattcatactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaa 25927536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 129
Target Start/End: Complemental strand, 2530491 - 2530384
Alignment:
Q  23 tcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattca-catcaagttaaataacaaatcattctcaatagtttctt 121  Q
    ||||||||||||||||| |||||||||||||||||| ||||||| || ||||||||| |||  |||||| | |||||||| ||||| |||  | ||||||    
T  2530491 tcatcaacttattcatactcatgcaacttagttaaataacaattgcagcataatcaaatcataatcaagcttaataacaattcattttcagcaatttctt 2530392  T
Q  122 gatcattc 129  Q
    ||||||||    
T  2530391 gatcattc 2530384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 13635573 - 13635445
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatca--agttaaataacaaatcattctcaatagtt 117  Q
    |||||||||||||||||| | |||||||||||||||||  ||||||  || ||||||||  ||||||||  || | |||| ||| ||||| |||| | ||    
T  13635573 tcatcatcaacttattcagactcatgcaacttagttaattaacaatagcagcataatcagatcacatcaacagcttaatatcaattcattttcaacaatt 13635474  T
Q  118 tcttgatcattcaacaacaattcaagtaa 146  Q
    |||||||||||||| || |||||||||||    
T  13635473 tcttgatcattcaataataattcaagtaa 13635445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 16583258 - 16583386
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatca--agttaaataacaaatcattctcaatagtt 117  Q
    |||||||||||||||||| | ||||||||| |||||||  ||||||  || ||||||||  ||||||||  || | |||| ||| ||||| |||| | ||    
T  16583258 tcatcatcaacttattcagactcatgcaacgtagttaattaacaatagcagcataatcagatcacatcaacagcttaatatcaattcattttcaacaatt 16583357  T
Q  118 tcttgatcattcaacaacaattcaagtaa 146  Q
    ||| ||||||||||||| |||||||||||    
T  16583358 tctcgatcattcaacaataattcaagtaa 16583386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 7519461 - 7519335
Alignment:
Q  20 tcatcatcaactta-ttcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagttt 118  Q
    |||||||||| ||| |||| | |||| ||||||||||||| ||||||| || ||||||||| |||||||||| | |||||||| ||||| |||| |   |    
T  7519461 tcatcatcaatttaattcagactcatccaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaattcatt-tcaacaacat 7519363  T
Q  119 cttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||| || | |||||||||    
T  7519362 cttgatcattcaataatatttcaagtaa 7519335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 45170089 - 45169988
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttgatcattcaacaacaattc 140  Q
    ||||||||||||||| |||||||||| || ||||||||||||| |||||| | |||||||| ||||| |||| |   |||||||||||||| || | |||    
T  45170089 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 45169994  T
Q  141 aagtaa 146  Q
    ||||||    
T  45169993 aagtaa 45169988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 147
Target Start/End: Original strand, 6801237 - 6801341
Alignment:
Q  42 catgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttgatcattcaacaacaattca 141  Q
    |||||||| ||||| || ||||||| || ||||||||| |||  ||||| | ||||||||||||||||||| |  |||||||||| | ||||| ||||||    
T  6801237 catgcaacatagtttaataacaattgcagcataatcaaatcatgtcaagcttaataacaaatcattctcaaca-attcttgatcaattaacaataattca 6801335  T
Q  142 agtaag 147  Q
    ||||||    
T  6801336 agtaag 6801341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 12318129 - 12318257
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatca--agttaaataacaaatcattctcaatagtt 117  Q
    ||||||||| |||||||| | |||||||||||||||||  ||||||  || ||||||||  ||||||||  || | |||| ||| ||||| |||| |  |    
T  12318129 tcatcatcatcttattcagactcatgcaacttagttaattaacaatagcagcataatcagatcacatcaacagcttaatatcaattcattttcaacaact 12318228  T
Q  118 tcttgatcattcaacaacaattcaagtaa 146  Q
    |||| ||||||||| || |||||||||||    
T  12318229 tcttaatcattcaataataattcaagtaa 12318257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 15580693 - 15580821
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaa--gttaaataacaaatcattctcaatagtt 117  Q
    ||||||||| |||||||| | |||||||||||||||||| ||| ||  || ||||||||  |||||||||  | | |||| ||| ||||| |||| |  |    
T  15580693 tcatcatcatcttattcagactcatgcaacttagttaaataacgatagcagcataatcagatcacatcaacagcttaatatcaattcattttcaacaact 15580792  T
Q  118 tcttgatcattcaacaacaattcaagtaa 146  Q
    | || ||||||||| || |||||||||||    
T  15580793 tttttatcattcaataataattcaagtaa 15580821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 9644385 - 9644437
Alignment:
Q  94 aataacaaatcattctcaatagtttcttgatcattcaacaacaattcaagtaa 146  Q
    |||||||| ||||| |||| | |||||||||||||||| || |||||||||||    
T  9644385 aataacaattcattttcaacaatttcttgatcattcaataataattcaagtaa 9644437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 102; Significance: 7e-51; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 24 - 153
Target Start/End: Complemental strand, 16762 - 16633
Alignment:
Q  24 catcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttga 123  Q
    ||||||||||||||||||||||| ||||||||||| ||||||| || ||||||||| ||| ||||| |||||||||||||||||||||||||||||||||    
T  16762 catcaacttattcataatcatgcgacttagttaaataacaattgcagcataatcaaatcatatcaacttaaataacaaatcattctcaatagtttcttga 16663  T
Q  124 tcattcaacaacaattcaagtaagtataat 153  Q
    ||||||||||||||||||||||||||||||    
T  16662 tcattcaacaacaattcaagtaagtataat 16633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 6103 - 5972
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    |||||||||||||||||||| ||||||||||||||| || ||||||| || ||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  6103 tcatcatcaacttattcatactcatgcaacttagtttaataacaattgcagcataatcaaatcacatcaggttaaataacaaatcattctcaatagtttc 6004  T
Q  120 ttgatcattcaacaacaattcaagtaagtata 151  Q
    ||||||||||||||| ||||||||||||||||    
T  6003 ttgatcattcaacaataattcaagtaagtata 5972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 62263 - 62394
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| |||||||| |||||||||||| |||||||||||||||||    
T  62263 tcatcatcaacttattcataatcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaggttaaataacaactcattctcaatagtttc 62362  T
Q  120 ttgatcattcaacaacaattcaagtaagtata 151  Q
    ||||||||||||||| |||||||| |||||||    
T  62363 ttgatcattcaacaataattcaagcaagtata 62394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 12906 - 13034
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatca--agttaaataacaaatcattctcaatagtt 117  Q
    |||||||||||||||||| | |||||||||||||||||  ||||||   | ||||||||  ||||||||  || | |||| ||| ||||  |||| | ||    
T  12906 tcatcatcaacttattcagactcatgcaacttagttaattaacaataggagcataatcagatcacatcaacagcttaatatcaattcatcttcaacaatt 13005  T
Q  118 tcttgatcattcaacaacaattcaagtaa 146  Q
    |||||||||||||| || |||||||||||    
T  13006 tcttgatcattcaataataattcaagtaa 13034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 19190 - 19318
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatca--agttaaataacaaatcattctcaatagtt 117  Q
    |||||||||||||||||| | |||||||||||||||||  ||||||   | ||||||||  ||||||||  || | |||| ||| ||||  |||| | ||    
T  19190 tcatcatcaacttattcagactcatgcaacttagttaattaacaataggagcataatcagatcacatcaacagcttaatatcaattcatcttcaacaatt 19289  T
Q  118 tcttgatcattcaacaacaattcaagtaa 146  Q
    |||||||||||||| || |||| ||||||    
T  19290 tcttgatcattcaataataattaaagtaa 19318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0546 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: scaffold0546
Description:

Target: scaffold0546; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 1902 - 2035
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||||||||||||||||||||||||| ||||||| |||| || || ||| ||||| ||||||||||||||||||||||||| |||||||||||||    
T  1902 tcatcatcaacttattcataatcatgcaactcagttaaataacatttgcagcattatcaaatcacatcaagttaaataacaaatcactctcaatagtttc 2001  T
Q  120 ttgatcattcaacaacaattcaagtaagtataat 153  Q
    ||||||||| ||||||||||||||||||||||||    
T  2002 ttgatcatttaacaacaattcaagtaagtataat 2035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0546; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 6360 - 6234
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    |||||||||||||||||||  ||||||||| ||||| || ||||||| || ||||||||| |||||||||||| ||||||||||||||| ||  |  |||    
T  6360 tcatcatcaacttattcatgctcatgcaacatagtttaataacaattgcagcataatcaaatcacatcaagtttaataacaaatcattcacagcaacttc 6261  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||||| |||||||||||    
T  6260 ttgatcattcaacaataattcaagtaa 6234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0109 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: scaffold0109
Description:

Target: scaffold0109; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 11405 - 11272
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||||||||||||||||||||||||| ||||||| |||| || || ||| ||||| ||||||||||||||||||||||||| |||||||||||||    
T  11405 tcatcatcaacttattcataatcatgcaactcagttaaataacatttgcagcattatcaaatcacatcaagttaaataacaaatcactctcaatagtttc 11306  T
Q  120 ttgatcattcaacaacaattcaagtaagtataat 153  Q
    ||||||||| ||||||||||||||||||||||||    
T  11305 ttgatcatttaacaacaattcaagtaagtataat 11272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0109; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 38922 - 38789
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||||||||||||||||||||||||| ||||||| |||| || || ||| ||||| | ||||||||||||||||||||||| |||||||||||||    
T  38922 tcatcatcaacttattcataatcatgcaactcagttaaataacatttgcagcattatcaaatgacatcaagttaaataacaaatcactctcaatagtttc 38823  T
Q  120 ttgatcattcaacaacaattcaagtaagtataat 153  Q
    ||||||||| ||||||||||||||||||||||||    
T  38822 ttgatcatttaacaacaattcaagtaagtataat 38789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0109; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 6947 - 7073
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    |||||||||||||||||||  ||||||||| ||||| || ||||||| || ||||||||| |||||||||||| ||||||||||||||| ||  |  |||    
T  6947 tcatcatcaacttattcatgctcatgcaacatagtttaataacaattgcagcataatcaaatcacatcaagtttaataacaaatcattcacagcaacttc 7046  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||||| |||||||||||    
T  7047 ttgatcattcaacaataattcaagtaa 7073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 21702290 - 21702423
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||| || || |||||| |||||||||||||||||||||||||| ||||||||||||    
T  21702290 tcatcatcaacttattcataatcatgcaacttaattaaataacaattgcagcaaaatcaaatcacatcaagttaaataacaaatcatactcaatagtttc 21702389  T
Q  120 ttgatcattcaacaacaattcaagtaagtataat 153  Q
    ||||||||||||||| |||||||| |||||||||    
T  21702390 ttgatcattcaacaaaaattcaagaaagtataat 21702423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 1587834 - 1587703
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    |||||||||||||||||||| ||||||||||||||| || ||||||| || ||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  1587834 tcatcatcaacttattcatattcatgcaacttagtttaataacaattgcagcataatcaaatcacatcaggttaaataacaaatcattctcaatagtttc 1587735  T
Q  120 ttgatcattcaacaacaattcaagtaagtata 151  Q
    ||||||||||||||| |||||||| |||||||    
T  1587734 ttgatcattcaacaataattcaagcaagtata 1587703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 23 - 153
Target Start/End: Original strand, 1644293 - 1644423
Alignment:
Q  23 tcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttg 122  Q
    ||||||||||||||||| || ||||||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||||||| | |||||||||    
T  1644293 tcatcaacttattcatactcttgcaacttagttaaataacaattgcagcataatcaaatcacatcaagttaaataacaaatcattctcgaaagtttcttg 1644392  T
Q  123 atcattcaacaacaattcaagtaagtataat 153  Q
    ||||||||||||||||||||||| |||||||    
T  1644393 atcattcaacaacaattcaagtaggtataat 1644423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 31478331 - 31478201
Alignment:
Q  23 tcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttg 122  Q
    ||||||||||||||||| || ||||||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||||||| | |||||||||    
T  31478331 tcatcaacttattcatactcttgcaacttagttaaataacaattgcagcataatcaaatcacatcaagttaaataacaaatcattctcgaaagtttcttg 31478232  T
Q  123 atcattcaacaacaattcaagtaagtataat 153  Q
    ||||||||||||||||||||||| |||||||    
T  31478231 atcattcaacaacaattcaagtaggtataat 31478201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 20803657 - 20803526
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    |||||||||||||||||||| ||||||| ||||||| || ||||||| || ||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  20803657 tcatcatcaacttattcatattcatgcagcttagtttaataacaattgcagcataatcaaatcacatcaggttaaataacaaatcattctcaatagtttc 20803558  T
Q  120 ttgatcattcaacaacaattcaagtaagtata 151  Q
    ||||||||||||||| |||||||| |||||||    
T  20803557 ttgatcattcaacaataattcaagcaagtata 20803526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 5616918 - 5616792
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||| || ||||||||| |||||||||||| ||||||||||||||||||  |  |||    
T  5616918 tcatcatcaacttattcatactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagtttaataacaaatcattctcagcaacttc 5616819  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||||| |||||||||||    
T  5616818 ttgatcattcaacaataattcaagtaa 5616792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 25135775 - 25135642
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||||||||||||||||||||||||| | ||||| |||| || || ||| ||||| |||||||||||||| |||| ||||| ||||||||| |||    
T  25135775 tcatcatcaacttattcataatcatgcaactcaattaaataacatttgcagcattatcaaatcacatcaagttaagtaacgaatcactctcaataggttc 25135676  T
Q  120 ttgatcattcaacaacaattcaagtaagtataat 153  Q
    ||||||||| ||||||||||||||||||||||||    
T  25135675 ttgatcatttaacaacaattcaagtaagtataat 25135642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 9482396 - 9482270
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||| ||||||||||  ||||||||||||||||| |||| || || ||||| ||| |||||||| ||| ||||||||||||||||||| | ||||    
T  9482396 tcatcatcagcttattcatacacatgcaacttagttaaataacatttgcagcataagcaaatcacatcaggtttaataacaaatcattctcaacaatttc 9482297  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||||| |||||||||||    
T  9482296 ttgatcattcaacaataattcaagtaa 9482270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 22592906 - 22592780
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||| ||||||||||  ||||||||||||||||| |||| ||  | ||||||||| ||||| || ||| ||||||||||||||||||| | ||||    
T  22592906 tcatcatcagcttattcatagacatgcaacttagttaaataacatttgtagcataatcaaatcacaacaggtttaataacaaatcattctcaacaatttc 22592807  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||||| |||||||||||    
T  22592806 ttgatcattcaacaataattcaagtaa 22592780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 12706691 - 12706818
Alignment:
Q  20 tcatcatcaactta-ttcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagttt 118  Q
    |||||||||||||| |||| | |||||||||||||||||| ||||||| || ||||||||| |||||||||| | |||||||| ||||| |||  | |||    
T  12706691 tcatcatcaacttaattcagactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaattcattttcagcaattt 12706790  T
Q  119 cttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||| || |||||||||||    
T  12706791 cttgatcattcaaaaataattcaagtaa 12706818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 12496311 - 12496437
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||| ||||||||||  ||||||||||||||||| |||| || || ||||||||  ||||| || |||  |||||||||||||||||| | ||||    
T  12496311 tcatcatcagcttattcatagacatgcaacttagttaaataacatttgcagcataatcagatcacaacaggttctataacaaatcattctcaacaatttc 12496410  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||||| | |||||||||    
T  12496411 ttgatcattcaacaatatttcaagtaa 12496437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 23414648 - 23414735
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcatt 107  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||| || ||||||||| |||||||||| | |||||||| |||||    
T  23414648 tcatcatcaacttattcatactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaattcatt 23414735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 27556406 - 27556493
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcatt 107  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||| || ||||||||| |||||||||| | |||||||| |||||    
T  27556406 tcatcatcaacttattcatactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaattcatt 27556493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 23 - 147
Target Start/End: Original strand, 19662775 - 19662899
Alignment:
Q  23 tcatcaacttatt-cataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttctt 121  Q
    ||||||||||||| || | ||||||||| ||||| || ||||||| || ||||||||| |||| ||||| | ||||||||||||||||||| |  |||||    
T  19662775 tcatcaacttatttcagactcatgcaacatagtttaataacaattgcagcataatcaaatcacgtcaagcttaataacaaatcattctcaaca-attctt 19662873  T
Q  122 gatcattcaacaacaattcaagtaag 147  Q
    ||||| ||||||| ||||||||||||    
T  19662874 gatcaatcaacaataattcaagtaag 19662899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 2685422 - 2685295
Alignment:
Q  20 tcatcatcaacttatt-cataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagttt 118  Q
    |||||||||||||||| || | ||||||||| ||||| || ||||||| || ||||||||| |||| ||||| | ||||||||||||||||||| |  ||    
T  2685422 tcatcatcaacttatttcagactcatgcaacatagtttaataacaattgcagcataatcaaatcacgtcaagcttaataacaaatcattctcaaca-att 2685324  T
Q  119 cttgatcattcaacaacaattcaagtaag 147  Q
    |||||||| || |||| ||||||||||||    
T  2685323 cttgatcaatcgacaataattcaagtaag 2685295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 16741208 - 16741335
Alignment:
Q  20 tcatcatcaactta-ttcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagttt 118  Q
    |||||||||||||| |||| |  |||||||||||||| || |||||||  | ||||||||| |||||||||| | |||||||| ||| | |||| | |||    
T  16741208 tcatcatcaacttaattcagacacatgcaacttagtttaataacaattgtagcataatcaaatcacatcaagcttaataacaattcactgtcaacaattt 16741307  T
Q  119 cttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||| || |||||||||||    
T  16741308 cttgatcattcaataataattcaagtaa 16741335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 146
Target Start/End: Original strand, 16624137 - 16624256
Alignment:
Q  23 tcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttg 122  Q
    ||||||||||||||||| || ||||||||||||||| ||||||| || ||||||||||||| |||||  | |||||||| ||||| |||| |   |||||    
T  16624137 tcatcaacttattcatattcttgcaacttagttaaataacaattgcagcataatcaattcatatcaaacttaataacaattcatt-tcaaca---tcttg 16624232  T
Q  123 atcattcaacaacaattcaagtaa 146  Q
    ||||||||| || | |||||||||    
T  16624233 atcattcaataatacttcaagtaa 16624256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 27416290 - 27416230
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaat 80  Q
    ||||||||||| |||||||| |||||||||||||||||| ||||||| || ||||||||||    
T  27416290 tcatcatcaacatattcatactcatgcaacttagttaaataacaattgcagcataatcaat 27416230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 31477893 - 31477792
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttgatcattcaacaacaattc 140  Q
    ||||||||||||||| |||||||||| || ||||||||||||| |||||| | |||||||| ||||| |||| |   |||||||||||||| || | |||    
T  31477893 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 31477798  T
Q  141 aagtaa 146  Q
    ||||||    
T  31477797 aagtaa 31477792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 146
Target Start/End: Original strand, 16760321 - 16760419
Alignment:
Q  44 tgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttgatcattcaacaacaattcaag 143  Q
    |||||||||||| |||||||||| || ||||||||||||| |||||| | |||||||| ||||| |||| |   |||||||||||||| || | ||||||    
T  16760321 tgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttcaag 16760416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 22949131 - 22949191
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaa 101  Q
    ||||||||||||||| |||||||||| || ||||||||||||| |||||| | ||||||||    
T  22949131 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaa 22949191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 22953087 - 22953147
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaa 101  Q
    ||||||||||||||| |||||||||| || ||||||||||||| |||||| | ||||||||    
T  22953087 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaa 22953147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 23871575 - 23871635
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaa 101  Q
    ||||||||||||||| |||||||||| || ||||||||||||| |||||| | ||||||||    
T  23871575 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaa 23871635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 23875531 - 23875591
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaa 101  Q
    ||||||||||||||| |||||||||| || ||||||||||||| |||||| | ||||||||    
T  23875531 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaa 23875591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 23 - 153
Target Start/End: Original strand, 80300 - 80430
Alignment:
Q  23 tcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttg 122  Q
    ||||||||||||||||| || ||||||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||||||| | |||||||||    
T  80300 tcatcaacttattcatactcttgcaacttagttaaataacaattgcagcataatcaaatcacatcaagttaaataacaaatcattctcgaaagtttcttg 80399  T
Q  123 atcattcaacaacaattcaagtaagtataat 153  Q
    ||||||||||||||||||||||| |||||||    
T  80400 atcattcaacaacaattcaagtaggtataat 80430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 41 - 146
Target Start/End: Original strand, 80738 - 80842
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttgatcattcaacaacaattc 140  Q
    ||||||||||||||| || ||||||| || ||||||||||||| |||||| | |||||||| ||||| |||| |  ||| ||||||||||| || |||||    
T  80738 tcatgcaacttagtttaataacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaacatcttcctgatcattcaataataattc 80836  T
Q  141 aagtaa 146  Q
    ||||||    
T  80837 aagtaa 80842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 65611 - 65504
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaa--gttaaataacaaatcattctcaatagtttcttgatcattcaacaacaat 138  Q
    |||||||||||||||||| ||||||  || ||||||||  ||| |||||  | | |||| ||| ||||| |||| |  ||||||||||||||| || |||    
T  65611 tcatgcaacttagttaaataacaatagcagcataatcagatcatatcaacagcttaatatcaattcattttcaacaacttcttgatcattcaataataat 65512  T
Q  139 tcaagtaa 146  Q
    ||||||||    
T  65511 tcaagtaa 65504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 20229330 - 20229200
Alignment:
Q  23 tcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttg 122  Q
    ||||||||||||||||| || ||||||||||||||| ||||||| || ||||||||| |||||| ||||||||||||||||||||||||| |||||||||    
T  20229330 tcatcaacttattcatactcttgcaacttagttaaataacaattccagcataatcaaatcacattaagttaaataacaaatcattctcaaaagtttcttg 20229231  T
Q  123 atcattcaacaacaattcaagtaagtataat 153  Q
    ||||||||||||||||||||||| |||||||    
T  20229230 atcattcaacaacaattcaagtaggtataat 20229200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 18882370 - 18882496
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||| |||||||||||  |||||||||||||||| |||| ||||| ||||||||| |||||||||| | |||||||||||||| |||| | ||||    
T  18882370 tcatcatcagcttattcataaaaatgcaacttagttaaataacattttcagcataatcaaatcacatcaagcttaataacaaatcattatcaacaatttc 18882469  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||||| |||||||||||    
T  18882470 ttgatcattcaacaataattcaagtaa 18882496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 20138085 - 20138209
Alignment:
Q  20 tcatcatcaactta-ttcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagttt 118  Q
    |||||||||||||| |||| | |||||||||||||||||| ||||||| || ||||||||| |||||||| ||| ||||||||||||||||||| | |||    
T  20138085 tcatcatcaacttaattcagactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaggtttaataacaaatcattctcaacaattt 20138184  T
Q  119 cttgatcattcaacaacaattcaag 143  Q
    ||||| |||||||||| ||||||||    
T  20138185 cttgaacattcaacaataattcaag 20138209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 19211869 - 19211996
Alignment:
Q  20 tcatcatcaactta-ttcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagttt 118  Q
    |||||||||||||| |||| | |||||||||||||||||| ||||||| || ||||||||| |||| ||||| | |||||||| |||||||||| | |||    
T  19211869 tcatcatcaacttaattcagactcatgcaacttagttaaataacaattgcagcataatcaaatcacgtcaagcttaataacaattcattctcaacaattt 19211968  T
Q  119 cttgatcattcaacaacaattcaagtaa 146  Q
    |||||||||||||||| |||||||||||    
T  19211969 cttgatcattcaacaataattcaagtaa 19211996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 46975470 - 46975596
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||| ||||||||||  | ||||||||||||||| |||| || || ||||||||| ||||| || ||| ||||||||||||||||||| | ||||    
T  46975470 tcatcatcagcttattcatagacgtgcaacttagttaaataacatttgcagcataatcaaatcacaacaggtttaataacaaatcattctcaacaatttc 46975569  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||||| |||||||||||    
T  46975570 ttgatcattcaacaataattcaagtaa 46975596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 33797285 - 33797372
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcatt 107  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||| || ||||||||| |||||||||| | |||||||| |||||    
T  33797285 tcatcatcaacttattcatactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaattcatt 33797372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 23 - 147
Target Start/End: Original strand, 12646876 - 12647000
Alignment:
Q  23 tcatcaacttatt-cataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttctt 121  Q
    ||||||||||||| || | ||||||||| ||||| || ||||||| || ||||||||| |||| ||||| | ||||||||||||||||||| |  |||||    
T  12646876 tcatcaacttatttcagattcatgcaacatagtttaataacaattgcagcataatcaaatcacgtcaagcttaataacaaatcattctcaaca-attctt 12646974  T
Q  122 gatcattcaacaacaattcaagtaag 147  Q
    ||||| ||||||| ||||||||||||    
T  12646975 gatcaatcaacaataattcaagtaag 12647000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 23819381 - 23819276
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttgatcattcaacaacaattc 140  Q
    ||||||||||| ||| || ||||||| || ||||||||||||| |||||| | |||||||| ||||| |||  | |||||||||||||||| || |||||    
T  23819381 tcatgcaacttcgtttaataacaattgcagcataatcaattcatatcaagcttaataacaattcattttcagcaatttcttgatcattcaataataattc 23819282  T
Q  141 aagtaa 146  Q
    ||||||    
T  23819281 aagtaa 23819276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 39244242 - 39244176
Alignment:
Q  23 tcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaa 89  Q
    ||||||||||||||||| || ||||||||||||||| ||||||| || ||||||||||||| |||||    
T  39244242 tcatcaacttattcatattcttgcaacttagttaaataacaattgcagcataatcaattcatatcaa 39244176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 39247797 - 39247731
Alignment:
Q  23 tcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaa 89  Q
    ||||||||||||||||| || ||||||||||||||| ||||||| || ||||||||||||| |||||    
T  39247797 tcatcaacttattcatattcttgcaacttagttaaataacaattgcagcataatcaattcatatcaa 39247731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 146
Target Start/End: Complemental strand, 41388342 - 41388223
Alignment:
Q  23 tcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttg 122  Q
    ||||||||||||||||| || ||||||||||||||| ||||||| || ||||||||||||  |||||| | ||||| || ||||| |||| |   |||||    
T  41388342 tcatcaacttattcatattcttgcaacttagttaaataacaattgcagcataatcaattcgtatcaagcttaataaaaattcatt-tcaaca---tcttg 41388247  T
Q  123 atcattcaacaacaattcaagtaa 146  Q
    ||||||||| || | |||||||||    
T  41388246 atcattcaataatatttcaagtaa 41388223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 1925212 - 1925111
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttgatcattcaacaacaattc 140  Q
    ||||||||||||||| |||||||||| || ||||||||||||| |||||| | |||||||| ||||| |||| |   |||||||||||||| || | |||    
T  1925212 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 1925117  T
Q  141 aagtaa 146  Q
    ||||||    
T  1925116 aagtaa 1925111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 20924226 - 20924125
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttgatcattcaacaacaattc 140  Q
    ||||||||||||||| |||||||||| || ||||||||||||| |||||| | |||||||| ||||| |||| |   |||||||||||||| || | |||    
T  20924226 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 20924131  T
Q  141 aagtaa 146  Q
    ||||||    
T  20924130 aagtaa 20924125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 36819413 - 36819287
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatca--agttaaataacaaa-tcattctcaatagt 116  Q
    |||||||||||||||||| | |||||||||||||||||  ||||||  || ||||||||  ||||||||  || | |||| |||| ||||| |||| |      
T  36819413 tcatcatcaacttattcagactcatgcaacttagttaattaacaatagcagcataatcagatcacatcaccagcttaatatcaaattcattttcaacaac 36819314  T
Q  117 ttcttgatcattcaacaacaattcaag 143  Q
    ||||||||||||||| || ||||||||    
T  36819313 ttcttgatcattcaataataattcaag 36819287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 24783199 - 24783076
Alignment:
Q  25 atcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatca--agttaaataacaaatcattctcaatagtttcttg 122  Q
    |||| |||||||| | |||||||||||||||||| ||||||  || ||||||||  |||||| |  || | |||| ||| ||||| |||| |  ||||||    
T  24783199 atcatcttattcagactcatgcaacttagttaaataacaatagcagcataatcagatcacatgaacagcttaatatcaattcattttcaacaacttcttg 24783100  T
Q  123 atcattcaacaacaattcaagtaa 146  Q
    ||||||||| || |||||||||||    
T  24783099 atcattcaataataattcaagtaa 24783076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 80876 - 80746
Alignment:
Q  23 tcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttg 122  Q
    ||||||||||||||||| || ||||||||||||||| ||||||| || |||||| || |||||||||||||||||||||||||||||| | |||||||||    
T  80876 tcatcaacttattcatactcttgcaacttagttaaataacaattgcagcataattaaatcacatcaagttaaataacaaatcattctcgaaagtttcttg 80777  T
Q  123 atcattcaacaacaattcaagtaagtataat 153  Q
    ||||||||||||||||||||||| |||||||    
T  80776 atcattcaacaacaattcaagtaggtataat 80746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1552 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold1552
Description:

Target: scaffold1552; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 371 - 493
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||| || ||||||||| |||||||| |||||| |||||||||||||||||| ||||    
T  371 tcatcatcaacttattcataatcatgcaacttaattaaataacaattgcagcataatcaaatcacatcaggttaaacaacaaatcattctcaataatttc 470  T
Q  120 ttgatcattcaacaacaattcaa 142  Q
    || |||||||||||| |||||||    
T  471 ttaatcattcaacaataattcaa 493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 75; Significance: 9e-35; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 9906 - 10032
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||| ||||||||||  ||||||||||||||||| |||| || || ||||||||| |||||||| ||| ||||||||||||||||||| | ||||    
T  9906 tcatcatcagcttattcatacacatgcaacttagttaaataacatttgcagcataatcaaatcacatcaggtttaataacaaatcattctcaacaatttc 10005  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||||| |||||||||||    
T  10006 ttgatcattcaacaataattcaagtaa 10032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 18357 - 18483
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||| ||||||||||  ||||||||||||||||| |||| || || ||||| ||| |||||||| ||| ||||||||||||||||||| | ||||    
T  18357 tcatcatcagcttattcatacacatgcaacttagttaaataacatttgcagcataaacaaatcacatcaggtttaataacaaatcattctcaacaatttc 18456  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||||| |||||||||||    
T  18457 ttgatcattcaacaataattcaagtaa 18483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 20120 - 19994
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    |||||||||||||||||| | ||||||||||||||| || ||||||| |||||||||||  |||||||||| | |||||||| ||||| |||| | ||||    
T  20120 tcatcatcaacttattcagattcatgcaacttagtttaataacaattgcaacataatcagatcacatcaagcttaataacaattcattttcaacaatttc 20021  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    |||||||||||| || |||||||||||    
T  20020 ttgatcattcaataataattcaagtaa 19994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 63857 - 63982
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||| ||||||||||| ||||||||||||||||| |||| || || ||||||||| ||||| || ||| |||||||| |||||||||| | ||||    
T  63857 tcatcatcagcttattcataa-catgcaacttagttaaataacatttgcagcataatcaaatcacaacaggtttaataacaattcattctcaacaatttc 63955  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||||| |||||||||||    
T  63956 ttgatcattcaacaataattcaagtaa 63982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 75741 - 75866
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||| ||||||||||| ||||||||||||||||| |||| ||||| ||||||||| ||||| || ||| |||||||| |||||||||| | ||||    
T  75741 tcatcatcagcttattcataa-catgcaacttagttaaataacattttcagcataatcaaatcacaacaggtttaataacaattcattctcaacaatttc 75839  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    |||| |||||||||| |||||||||||    
T  75840 ttgaccattcaacaataattcaagtaa 75866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 173294 - 173420
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    |||||||||||||||||| | |||||||||||||||||| ||||||| || ||||||||| |||||||||| | |||||||| ||||| |||| | ||||    
T  173294 tcatcatcaacttattcagactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaattcattttcaacaatttc 173393  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    || ||||||||| || |||||||||||    
T  173394 tttatcattcaataataattcaagtaa 173420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 64; Significance: 3e-28; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 3634 - 3507
Alignment:
Q  20 tcatcatcaactta-ttcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagttt 118  Q
    |||||||||||||| |||| | |||||||||||||||||| ||||||| ||  |||||||| |||||||||| | |||||||| ||||| |||| | |||    
T  3634 tcatcatcaacttaattcagactcatgcaacttagttaaataacaattgcagtataatcaaatcacatcaagcttaataacaattcattttcaacaattt 3535  T
Q  119 cttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||| ||||||||||||||    
T  3534 cttgatcattcaataacaattcaagtaa 3507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 228476 - 228350
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    |||||||||||||||||| | |||||||||||||||||| ||||||| || ||||||||  |||||||||| | |||||||| ||||| ||||   ||||    
T  228476 tcatcatcaacttattcagactcatgcaacttagttaaataacaattgcagcataatcagatcacatcaagcttaataacaattcattttcaactatttc 228377  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    |||||||||||| || |||||||||||    
T  228376 ttgatcattcaataataattcaagtaa 228350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 9423 - 9549
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    ||||||||| ||||||||||| ||||||||||||||||| |||| || ||  ||||| || ||| | || ||| ||||||||||||||||||| | ||||    
T  9423 tcatcatcagcttattcataaacatgcaacttagttaaataacatttgcagtataattaaatcataacaggtttaataacaaatcattctcaacaatttc 9522  T
Q  120 ttgatcattcaacaacaattcaagtaa 146  Q
    |||||||||||| || |||||||||||    
T  9523 ttgatcattcaataataattcaagtaa 9549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 23 - 146
Target Start/End: Complemental strand, 18461 - 18337
Alignment:
Q  23 tcatcaactta-ttcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttctt 121  Q
    ||||||||||| |||| | |||||||||||||||||| ||||||| || ||||||||| |||||||||| | |||||||| ||||| |||| | || |||    
T  18461 tcatcaacttaattcagactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaattcattttcaacaattcctt 18362  T
Q  122 gatcattcaacaacaattcaagtaa 146  Q
    |||||||||| || |||||||||||    
T  18361 gatcattcaataataattcaagtaa 18337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 20567 - 20480
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcatt 107  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||| || ||||||||| |||||||||| | |||||||| |||||    
T  20567 tcatcatcaacttattcatattcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaattcatt 20480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 2776 - 2649
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatca--agttaaataacaaatcattctcaatagtt 117  Q
    |||||||||||||||||| | |||||||||||||||||  ||||||| || ||||||||  ||||||||  || | |||||||| ||||| |||| | ||    
T  2776 tcatcatcaacttattcagactcatgcaacttagttaattaacaattgcagcataatcagatcacatcaacagcttaataacaattcatt-tcaacaatt 2678  T
Q  118 tcttgatcattcaacaacaattcaagtaa 146  Q
    |||||||||||||| ||||||||||||||    
T  2677 tcttgatcattcaataacaattcaagtaa 2649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 18736 - 18608
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaa--gttaaataacaaatcattctcaatagtt 117  Q
    |||||||||||||||||| | ||||||||||||| |||| ||||||  || ||||||||  ||| |||||  | | |||||||| ||||| |||||| ||    
T  18736 tcatcatcaacttattcagactcatgcaacttaggtaaataacaatagcagcataatcagatcatatcaacagcttaataacaattcattttcaataatt 18637  T
Q  118 tcttgatcattcaacaacaattcaagtaa 146  Q
    |||||||||||||| || |||||||||||    
T  18636 tcttgatcattcaaaaataattcaagtaa 18608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 30890 - 30974
Alignment:
Q  23 tcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcatt 107  Q
    ||||||||||||||||| |||||||||||||||||| ||||||| || ||||||||| || ||||||| | |||||||| |||||    
T  30890 tcatcaacttattcatactcatgcaacttagttaaataacaattacagcataatcaaatctcatcaagcttaataacaattcatt 30974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 139714 - 139806
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaa 112  Q
    |||||||||  |||||||||| ||||||||||||||||| |||| || || ||||||||| |||||||||| | || ||||||||||||||||    
T  139714 tcatcatcagtttattcataaacatgcaacttagttaaataacatttgcagcataatcaaatcacatcaagcttaacaacaaatcattctcaa 139806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 71071 - 71131
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaat 80  Q
    ||||||||||| |||||||| |||||||||||||||||| ||||||| || ||||||||||    
T  71071 tcatcatcaacatattcatactcatgcaacttagttaaataacaattgcagcataatcaat 71131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 6683 - 6770
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcatt 107  Q
    ||||||| |||||||||||| |||||||||||||||||| ||||||| || ||||||||| || ||||||| | |||||||| |||||    
T  6683 tcatcatgaacttattcatactcatgcaacttagttaaataacaattgcagcataatcaaatctcatcaagcttaataacaattcatt 6770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 139
Target Start/End: Original strand, 36309 - 36427
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttc 119  Q
    |||||||||  |||||||||| ||||||||||| ||||| |||| || || ||||||||| |||||||||| | |||||||||||||||| || |  |||    
T  36309 tcatcatcagtttattcataaacatgcaacttaattaaataacatttgcagcataatcaaatcacatcaagcttaataacaaatcattcttaaca-attc 36407  T
Q  120 ttgatcattcaacaacaatt 139  Q
    ||||||| | ||||||||||    
T  36408 ttgatcaattaacaacaatt 36427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 23218 - 23345
Alignment:
Q  20 tcatcatcaactta-ttcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagttt 118  Q
    ||||||||||| || |||| | ||||| ||| ||||| || || |||| || | ||||||| |||||||||| | ||||||||||||||||||| | |||    
T  23218 tcatcatcaacgtaattcagactcatgaaacatagtttaataataattgcagcttaatcaaatcacatcaagcttaataacaaatcattctcaacaattt 23317  T
Q  119 cttgatcattcaacaacaattcaagtaa 146  Q
    |||| ||||||||||| |||||||||||    
T  23318 cttggtcattcaacaataattcaagtaa 23345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 25073 - 24945
Alignment:
Q  20 tcatcatcaactta-ttcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagttt 118  Q
    |||||||||||||| |||| | |||||||||| |||| || ||||||| || ||||||||| |||||||||| | ||||||||  |||| |||||| ||     
T  25073 tcatcatcaacttaattcagactcatgcaactcagtttaataacaattgcagcataatcaaatcacatcaagcttaataacaacacattttcaataattc 24974  T
Q  119 ctt-gatcattcaacaacaattcaagtaa 146  Q
    ||| |||||||||| || |||||||||||    
T  24973 ctttgatcattcaataataattcaagtaa 24945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 189460 - 189359
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttgatcattcaacaacaattc 140  Q
    ||||||||||||||| |||||||||| || ||||||||||||| |||||| | |||||||| ||||| |||| |   |||||||||||||| || | |||    
T  189460 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 189365  T
Q  141 aagtaa 146  Q
    ||||||    
T  189364 aagtaa 189359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 207952 - 207894
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatca 78  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||| || ||||||||    
T  207952 tcatcatcaacttattcatattcatgcaacttagttaaataacaattgcagcataatca 207894  T

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Target: scaffold0229 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 11584 - 11483
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttgatcattcaacaacaattc 140  Q
    ||||||||||||||| |||||||||| || ||||||||||||| |||||| | |||||||| ||||| |||| |   |||||||||||||| || | |||    
T  11584 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 11489  T
Q  141 aagtaa 146  Q
    ||||||    
T  11488 aagtaa 11483  T

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Target: scaffold0141 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 14170 - 14069
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttgatcattcaacaacaattc 140  Q
    ||||||||||||||| |||||||||| || ||||||||||||| |||||| | |||||||| ||||| |||| |   |||||||||||||| || | |||    
T  14170 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 14075  T
Q  141 aagtaa 146  Q
    ||||||    
T  14074 aagtaa 14069  T

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Target: scaffold0031 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 36169 - 36068
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatcattctcaatagtttcttgatcattcaacaacaattc 140  Q
    ||||||||||||||| |||||||||| || ||||||||||||| |||||| | |||||||| ||||| |||| |   |||||||||||||| || | |||    
T  36169 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 36074  T
Q  141 aagtaa 146  Q
    ||||||    
T  36073 aagtaa 36068  T

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Target: scaffold0405 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0405
Description:

Target: scaffold0405; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 9769 - 9642
Alignment:
Q  20 tcatcatcaacttattcataatcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaaatca-ttctcaatagttt 118  Q
    |||||||||||||||| | | ||||||||| |||||||  ||||||| || | ||||||  |||||||||| | |||||||| ||| ||   || | |||    
T  9769 tcatcatcaacttatttagactcatgcaacatagttaattaacaattgcagcgtaatcagatcacatcaagcttaataacaattcatttaataacaattt 9670  T
Q  119 cttgatcattcaacaacaattcaagtaa 146  Q
    ||||||||||||| || |||||||||||    
T  9669 cttgatcattcaataataattcaagtaa 9642  T

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Target: scaffold1461 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1461
Description:

Target: scaffold1461; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 6 - 58
Alignment:
Q  94 aataacaaatcattctcaatagtttcttgatcattcaacaacaattcaagtaa 146  Q
    |||||||| |||||||||| | |||||||||||||||| || |||||||||||    
T  6 aataacaattcattctcaacaatttcttgatcattcaataataattcaagtaa 58  T

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Target: scaffold0157 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 32743 - 32683
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaagttaaataacaa 101  Q
    ||||||||||||||| |||||||||| || |||||||||||||  ||||| | ||||||||    
T  32743 tcatgcaacttagtttaacaacaattacagcataatcaattcatgtcaagcttaataacaa 32683  T

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Target: scaffold0104 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0104
Description:

Target: scaffold0104; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 9539 - 9587
Alignment:
Q  41 tcatgcaacttagttaaacaacaatttcaacataatcaattcacatcaa 89  Q
    |||||||||||||||||| ||||||  |||||||||||  |||||||||    
T  9539 tcatgcaacttagttaaataacaataacaacataatcagatcacatcaa 9587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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