View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0772_low_4 (Length: 437)

Name: NF0772_low_4
Description: NF0772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0772_low_4
NF0772_low_4
[»] chr1 (8 HSPs)
chr1 (147-311)||(28111459-28111622)
chr1 (152-311)||(24574032-24574186)
chr1 (135-305)||(16948838-16949008)
chr1 (233-302)||(2758303-2758372)
chr1 (359-415)||(2758426-2758482)
chr1 (134-197)||(19416448-19416511)
chr1 (359-425)||(28112611-28112677)
chr1 (135-192)||(16904810-16904867)
[»] chr2 (1 HSPs)
chr2 (148-303)||(15545133-15545288)
[»] chr5 (9 HSPs)
chr5 (160-311)||(21178305-21178459)
chr5 (150-302)||(25815202-25815354)
chr5 (233-309)||(36409757-36409833)
chr5 (134-277)||(10912056-10912208)
chr5 (202-278)||(11857368-11857444)
chr5 (134-212)||(11783032-11783110)
chr5 (363-422)||(11782949-11783008)
chr5 (338-432)||(10912248-10912342)
chr5 (338-412)||(11857498-11857572)
[»] chr3 (3 HSPs)
chr3 (155-297)||(11500468-11500609)
chr3 (148-303)||(36644724-36644882)
chr3 (201-303)||(22516775-22516877)
[»] chr7 (2 HSPs)
chr7 (189-309)||(25032770-25032890)
chr7 (180-265)||(3404023-3404108)
[»] chr8 (8 HSPs)
chr8 (137-309)||(32323320-32323492)
chr8 (148-221)||(18257473-18257546)
chr8 (247-299)||(3693443-3693495)
chr8 (148-221)||(3693499-3693572)
chr8 (148-303)||(34108872-34109028)
chr8 (202-288)||(29608676-29608762)
chr8 (259-295)||(18257730-18257766)
chr8 (360-425)||(32323539-32323604)
[»] chr4 (1 HSPs)
chr4 (138-290)||(36690208-36690359)


Alignment Details
Target: chr1 (Bit Score: 89; Significance: 9e-43; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 147 - 311
Target Start/End: Original strand, 28111459 - 28111622
Alignment:
Q  147 cttttttgactcaatttatttagccttaaacactcaagtttctaagtttaattatactaattattatttaaaatgtataagaatagaaaataaagtaata 246  Q
    ||||||| ||||||||||||||| ||| |||||||||||||||||| || |||| ||||| | ||||||| | || |||| |||  ||||||||||||      
T  28111459 cttttttcactcaatttatttagacttgaacactcaagtttctaagcttgattacactaacttttatttaga-tgcataacaatgaaaaataaagtaaag 28111557  T
Q  247 ttttgtttgcaatttacaaaagaatattaatccttaacgaatattaatttatgattcattgttac 311  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  28111558 ttttgtttgcaatttacaaaagaatattaatctttaacgaatattaatttatgattccttgttac 28111622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 152 - 311
Target Start/End: Original strand, 24574032 - 24574186
Alignment:
Q  152 ttgactcaatttatttagccttaaacactcaagtttctaagtttaattatactaattattatttaaaatgtataagaatagaaaataaagtaatattttg 251  Q
    ||||||| |||||||||||||| |||||||||||||||||  ||||||| | |   ||||||||| |||| |||  |||| ||||||||||     ||||    
T  24574032 ttgactcgatttatttagccttcaacactcaagtttctaatcttaattacaatgcctattatttagaatgcataccaataaaaaataaagt-----tttg 24574126  T
Q  252 tttgcaatttacaaaagaatattaatccttaacgaatattaatttatgattcattgttac 311  Q
    ||| |||||||||||||||||||| |||||||| |||||||||| ||||||  |||||||    
T  24574127 tttacaatttacaaaagaatattattccttaacaaatattaattcatgatttcttgttac 24574186  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 135 - 305
Target Start/End: Original strand, 16948838 - 16949008
Alignment:
Q  135 tgtataatgacccttttttgactcaatttatttagccttaaacactcaagtttctaagtttaattatactaattattatttaaaatgtataagaatagaa 234  Q
    |||||||| | | ||||||||||| ||||||||| |||| |||| | || |||||||| ||||||| ||||||  ||   || | |  |||| |||  ||    
T  16948838 tgtataattaactttttttgactccatttatttaaccttgaacagttaaatttctaagcttaattacactaatcgttgactagagtacataacaatgaaa 16948937  T
Q  235 aataaagtaatattttgtttgcaatttacaaaagaatattaatccttaacgaatattaatttatgattcat 305  Q
    ||| ||||||| |||||||| |||||||||||||||  |||| | ||||||||||| ||||||||||||||    
T  16948938 aattaagtaatgttttgtttccaatttacaaaagaactttaaacattaacgaatatcaatttatgattcat 16949008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 233 - 302
Target Start/End: Original strand, 2758303 - 2758372
Alignment:
Q  233 aaaataaagtaatattttgtttgcaatttacaaaagaatattaatccttaacgaatattaatttatgatt 302  Q
    ||||||||||||  |||||||||||||||||||||||| |||||| |||||| ||||| |||||||||||    
T  2758303 aaaataaagtaaagttttgtttgcaatttacaaaagaacattaattcttaacaaatatcaatttatgatt 2758372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 415
Target Start/End: Original strand, 2758426 - 2758482
Alignment:
Q  359 atgcactctcataccaacgattacatgctcatgattctattttgaattcatcctctt 415  Q
    ||||||| ||||||||||||||  |||||||||||| ||||||||||| ||||||||    
T  2758426 atgcactttcataccaacgattcaatgctcatgattttattttgaatttatcctctt 2758482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 197
Target Start/End: Original strand, 19416448 - 19416511
Alignment:
Q  134 ttgtataatgacccttttttgactcaatttatttagccttaaacactcaagtttctaagtttaa 197  Q
    ||||||||||||| |||||||||||||| ||||| ||||||||||||  ||||| || ||||||    
T  19416448 ttgtataatgacctttttttgactcaatatatttggccttaaacacttgagtttataggtttaa 19416511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 425
Target Start/End: Original strand, 28112611 - 28112677
Alignment:
Q  359 atgcactctcataccaacgattacatgctcatgattctattttgaattcatcctcttgcctttgcat 425  Q
    |||||||||||||||||| ||| | ||||  ||||||||  ||||||||||| |||| |||||||||    
T  28112611 atgcactctcataccaactattccgtgcttgtgattctaccttgaattcatcatcttacctttgcat 28112677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 16904867 - 16904810
Alignment:
Q  135 tgtataatgacccttttttgactcaatttatttagccttaaacactcaagtttctaag 192  Q
    |||||||||| | |||||| ||||||||||||||| ||  |||||| |||||||||||    
T  16904867 tgtataatgaacttttttttactcaatttatttagtctcgaacacttaagtttctaag 16904810  T

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Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 148 - 303
Target Start/End: Complemental strand, 15545288 - 15545133
Alignment:
Q  148 ttttttgactcaatttatttagccttaaacactcaagtttctaagtttaattatactaattattatttaaaatgtataagaatagaaaataaagtaatat 247  Q
    |||||| |||||| ||||||||||||  ||||||||||||||||| ||||||| || || ||||||||| |||| || | |||  ||||||||||||  |    
T  15545288 tttttttactcaaattatttagccttgtacactcaagtttctaagcttaattacaccaactattatttagaatgcattaaaatgaaaaataaagtaaagt 15545189  T
Q  248 tttgtttgcaatttacaaaagaatattaatccttaacgaatattaatttatgattc 303  Q
    |||||||| || ||||||||||||||||||||| ||| ||||||||||||||||||    
T  15545188 tttgtttgaaacttacaaaagaatattaatcctgaactaatattaatttatgattc 15545133  T

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Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 160 - 311
Target Start/End: Original strand, 21178305 - 21178459
Alignment:
Q  160 atttatttagccttaaacactcaagtttctaagtttaattatactaattattatttaaaatgtataagaatagaaaataaagtaatattttgtttgcaat 259  Q
    |||||||||||||| |||||||||||||||||  ||||||| || || ||||||||  |||| |||| |||  ||| |||||||| ||||||||||||||    
T  21178305 atttatttagccttgaacactcaagtttctaaccttaattacaccaactattatttggaatgcataacaatgaaaactaaagtaaaattttgtttgcaat 21178404  T
Q  260 t---tacaaaagaatattaatccttaacgaatattaatttatgattcattgttac 311  Q
    |   |||||| |||||||||||||||||||||||||| ||||||||| |||||||    
T  21178405 ttactacaaatgaatattaatccttaacgaatattaacttatgattccttgttac 21178459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 150 - 302
Target Start/End: Original strand, 25815202 - 25815354
Alignment:
Q  150 ttttgactcaatttatttagccttaaacactcaagtttctaagtttaattatactaattattatttaaaatgtataagaatagaaaataaagtaatattt 249  Q
    |||| ||||| |||| || | ||| |||| ||||||||||||  ||||||||||||||||||||||  | || |||| |||| |||||||||||| ||||    
T  25815202 tttttactcattttacttggtcttgaacattcaagtttctaaacttaattatactaattattatttttattgcataacaataaaaaataaagtaaaattt 25815301  T
Q  250 tgtttgcaatttacaaaagaatattaatccttaacgaatattaatttatgatt 302  Q
    |||||||| |||||||||||| |||||||||||||||||||  ||||||||||    
T  25815302 tgtttgcactttacaaaagaacattaatccttaacgaatatccatttatgatt 25815354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 233 - 309
Target Start/End: Original strand, 36409757 - 36409833
Alignment:
Q  233 aaaataaagtaatattttgtttgcaatttacaaaagaatattaatccttaacgaatattaatttatgattcattgtt 309  Q
    ||||||||||||  |||||||||||||||||||||||| |||||||||||||||| || |||||||||||| |||||    
T  36409757 aaaataaagtaaagttttgtttgcaatttacaaaagaacattaatccttaacgaaaatcaatttatgattccttgtt 36409833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 134 - 277
Target Start/End: Original strand, 10912056 - 10912208
Alignment:
Q  134 ttgtataatgacccttttttgactcaatttatttagccttaaacactcaagtttctaagtttaattatactaa--ttat-------tatttaaaatgtat 224  Q
    ||||||||||| | |||||| |||||||||| |||||||| | ||||||| |||||||| |||||| ||||||  ||||       |||||| |||| ||    
T  10912056 ttgtataatgaacttttttttactcaatttaattagccttgatcactcaaatttctaagcttaattgtactaactttatgatgtagtatttagaatggat 10912155  T
Q  225 aagaatagaaaataaagtaatattttgtttgcaatttacaaaagaatattaat 277  Q
    || |||  ||||||||||||  |||||||||||||||||||||||||||||||    
T  10912156 aacaatgaaaaataaagtaaagttttgtttgcaatttacaaaagaatattaat 10912208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 202 - 278
Target Start/End: Original strand, 11857368 - 11857444
Alignment:
Q  202 actaattattatttaaaatgtataagaatagaaaataaagtaatattttgtttgcaatttacaaaagaatattaatc 278  Q
    ||||| ||||||||||| || |||| ||| |||||||||||||  ||||||||||||||||||||| ||||||||||    
T  11857368 actaactattatttaaattgcataacaatggaaaataaagtaacgttttgtttgcaatttacaaaaaaatattaatc 11857444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 134 - 212
Target Start/End: Complemental strand, 11783110 - 11783032
Alignment:
Q  134 ttgtataatgacccttttttgactcaatttatttagccttaaacactcaagtttctaagtttaattatactaattatta 212  Q
    ||||||||||| | ||||||||||||||||||||| |||| || |||||| |||||||| ||||||| ||||| |||||    
T  11783110 ttgtataatgaacattttttgactcaatttatttaacctttaagactcaaatttctaagcttaattacactaactatta 11783032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 422
Target Start/End: Complemental strand, 11783008 - 11782949
Alignment:
Q  363 actctcataccaacgattacatgctcatgattctattttgaattcatcctcttgcctttg 422  Q
    |||| |||||||||||||  |||||||||||||||| |||||| |||||| || ||||||    
T  11783008 actcccataccaacgattcaatgctcatgattctatcttgaatacatccttttacctttg 11782949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 432
Target Start/End: Original strand, 10912248 - 10912342
Alignment:
Q  338 ttattgcatggagtgttgatcatgcactctcataccaacgattacatgctcatgattctattttgaattcatcctcttgcctttgcatattattg 432  Q
    |||||||||| ||||||  | | ||||||||||||||||||||  |  ||||||||| ||||||||| ||||| |||| ||| | ||| ||||||    
T  10912248 ttattgcatgtagtgttttttacgcactctcataccaacgattcaacactcatgattttattttgaactcatcttcttacctatacattttattg 10912342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 412
Target Start/End: Original strand, 11857498 - 11857572
Alignment:
Q  338 ttattgcatggagtgttgatcatgcactctcataccaacgattacatgctcatgattctattttgaattcatcct 412  Q
    |||||||||| ||||||  | | ||||||||||||||||||||  ||||| ||| || ||| |||||||||||||    
T  11857498 ttattgcatgtagtgttatttacgcactctcataccaacgattcaatgcttatggttgtatcttgaattcatcct 11857572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 155 - 297
Target Start/End: Original strand, 11500468 - 11500609
Alignment:
Q  155 actcaatttatttagccttaaacactcaagtttctaagtttaattatactaattattatttaaaatgtataagaatagaaaataaagtaatattttgttt 254  Q
    |||||||||| ||||||||||||| ||||||||||||| ||||||| ||||  ||||||||| |||| |||| |||  ||||||||||||  ||||| ||    
T  11500468 actcaatttacttagccttaaacattcaagtttctaagcttaattacactagctattatttataatgcataacaatgaaaaataaagtaaagttttg-tt 11500566  T
Q  255 gcaatttacaaaagaatattaatccttaacgaatattaattta 297  Q
    ||||||||||||| || ||||||||||||| ||||| ||||||    
T  11500567 gcaatttacaaaacaacattaatccttaacaaatatcaattta 11500609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 148 - 303
Target Start/End: Complemental strand, 36644882 - 36644724
Alignment:
Q  148 ttttttgactcaatttatttagccttaaacactcaagtttctaagtttaattatactaattattatttaaaatg----tataagaatagaaaataaagta 243  Q
    |||||| |||||||||||| |||||| |||||||||||||||||| ||||||| | ||| |||| |||| ||||    ||||| |||  |||||||| ||    
T  36644882 tttttttactcaatttattcagccttgaacactcaagtttctaagcttaattacattaactattgtttagaatgcatatataacaatgaaaaataaatta 36644783  T
Q  244 atattttgtttgcaatttacaaaagaatattaatccttaacgaatattaatttatgattc 303  Q
    |  |||||||||||||| || |||| | |||||||||||| |||||| ||||||||||||    
T  36644782 aagttttgtttgcaattgac-aaaggacattaatccttaatgaatatcaatttatgattc 36644724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 201 - 303
Target Start/End: Complemental strand, 22516877 - 22516775
Alignment:
Q  201 tactaattattatttaaaatgtataagaatagaaaataaagtaatattttgtttgcaatttacaaaagaatattaatccttaacgaatattaatttatga 300  Q
    |||||| ||||||||| |||| |||| |||  ||||||||||||  ||||||||||||||  ||||| |||||||||| | |||||||||||||||||||    
T  22516877 tactaactattatttagaatgcataaaaatgaaaaataaagtaaatttttgtttgcaattatcaaaaaaatattaatcatcaacgaatattaatttatga 22516778  T
Q  301 ttc 303  Q
    |||    
T  22516777 ttc 22516775  T

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Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 189 - 309
Target Start/End: Complemental strand, 25032890 - 25032770
Alignment:
Q  189 taagtttaattatactaattattatttaaaatgtataagaatagaaaataaagtaatattttgtttgcaatttacaaaagaatattaatccttaacgaat 288  Q
    ||||||||||||||| || ||||||||  |||| |||| |||  ||||||||||||  ||||||||||||||| |||||||| |||||||||||||||||    
T  25032890 taagtttaattataccaactattatttttaatgcataacaatgaaaaataaagtaaacttttgtttgcaatttgcaaaagaacattaatccttaacgaat 25032791  T
Q  289 attaatttatgattcattgtt 309  Q
    || | |||||||||| |||||    
T  25032790 atcagtttatgattccttgtt 25032770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 180 - 265
Target Start/End: Original strand, 3404023 - 3404108
Alignment:
Q  180 tcaagtttctaagtttaattatactaattattatttaaaatgtataagaatagaaaataaagtaatattttgtttgcaatttacaa 265  Q
    ||||||||||||| |||||||  |||| ||||||||| |||| |||| |||  |||||||||||| ||||||||||||||||||||    
T  3404023 tcaagtttctaagcttaattacgctaactattatttataatgcataacaatgaaaaataaagtaaaattttgtttgcaatttacaa 3404108  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 137 - 309
Target Start/End: Original strand, 32323320 - 32323492
Alignment:
Q  137 tataatgacccttttttgactcaatttatttagccttaaacactcaagtttctaagtttaattatactaattattatttaaaatgtataagaatagaaaa 236  Q
    |||||||| | |||| ||||| ||| ||||||||||| |||||| |||||| |||| ||||||| |||||| ||||  || |||| |||| |||  ||||    
T  32323320 tataatgaactttttgtgactgaatatatttagccttgaacacttaagtttttaagattaattacactaatcattaactagaatgcataacaatgaaaaa 32323419  T
Q  237 taaagtaatattttgtttgcaatttacaaaagaatattaatccttaacgaatattaatttatgattcattgtt 309  Q
    | |||| | ||||||||||||||||||| |||||| | |||| | || |||||| | |||||||||| |||||    
T  32323420 ttaagtgaaattttgtttgcaatttacataagaatctgaatcatcaatgaatatcagtttatgattctttgtt 32323492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 18257473 - 18257546
Alignment:
Q  148 ttttttgactcaatttatttagccttaaacactcaagtttctaagtttaattatactaattattatttaaaatg 221  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||| ||| ||||| ||||||||| ||||    
T  18257473 tttttttactcaatttatttagccttgaacactcaagtttctaagtttatttacactaactattatttagaatg 18257546  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 3693495 - 3693443
Alignment:
Q  247 ttttgtttgcaatttacaaaagaatattaatccttaacgaatattaatttatg 299  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3693495 ttttatttgcaatttacaaaagaatattaatccttaacgaatattaatttatg 3693443  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 3693572 - 3693499
Alignment:
Q  148 ttttttgactcaatttatttagccttaaacactcaagtttctaagtttaattatactaattattatttaaaatg 221  Q
    |||||| ||||||||||||||||||| ||||||||||||| |||| ||||||| ||||| ||||||||| ||||    
T  3693572 tttttttactcaatttatttagccttgaacactcaagtttttaagcttaattacactaactattatttagaatg 3693499  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 148 - 303
Target Start/End: Complemental strand, 34109028 - 34108872
Alignment:
Q  148 ttttttgactcaatttatttagccttaaacactcaagtttctaagtttaattatactaattattatttaaaat---gtataagaatagaaaataaagtaa 244  Q
    |||||| |||||||||| |||||||| |||| |||| |||||||| ||||||| | ||| |||| |||| |||   | |||| |||  ||||||||||||    
T  34109028 tttttttactcaatttacttagcctttaacattcaattttctaagcttaattacaataactattgtttataataatgcataacaatgaaaaataaagtaa 34108929  T
Q  245 tattttgtttgcaatttacaaaagaatattaatccttaacgaatattaatttatgattc 303  Q
      |||||||||||||| |||||| || | || ||||||| |||||| ||||||||||||    
T  34108928 agttttgtttgcaattgacaaaa-aaca-tattccttaatgaatatcaatttatgattc 34108872  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 202 - 288
Target Start/End: Complemental strand, 29608762 - 29608676
Alignment:
Q  202 actaattattatttaaaatgtataagaatagaaaataaagtaatattttgtttgcaatttacaaaagaatattaatccttaacgaat 288  Q
    ||||| |||| |||| |||| |||| |||  ||||||||||||  |||||||||||||||||||||||| |||||| || |||||||    
T  29608762 actaactattgtttataatgcataacaatgaaaaataaagtaaagttttgtttgcaatttacaaaagaacattaattctgaacgaat 29608676  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 295
Target Start/End: Original strand, 18257730 - 18257766
Alignment:
Q  259 tttacaaaagaatattaatccttaacgaatattaatt 295  Q
    |||||||||||||||||||||||||||||||||||||    
T  18257730 tttacaaaagaatattaatccttaacgaatattaatt 18257766  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 360 - 425
Target Start/End: Original strand, 32323539 - 32323604
Alignment:
Q  360 tgcactctcataccaacgattacatgctcatgattctattttgaattcatcctcttgcctttgcat 425  Q
    |||||||| |||||||||||||  ||||||||||| ||| ||||||| ||||| || |||||||||    
T  32323539 tgcactcttataccaacgattaactgctcatgattttatcttgaatttatccttttacctttgcat 32323604  T

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Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 138 - 290
Target Start/End: Original strand, 36690208 - 36690359
Alignment:
Q  138 ataatgacccttttttgactcaatttatttagccttaaacactcaagtttctaagtttaattatactaattattatttaaaatgtataagaatagaaaat 237  Q
    ||||||| | |||||| |||||||||| |||||||| | |  ||||||||||||| ||||||  ||||| ||||||||  |||| |||| |||   ||||    
T  36690208 ataatgaacttttttttactcaatttacttagccttgagccttcaagtttctaagcttaattc-actaactattatttttaatgcataacaatgagaaat 36690306  T
Q  238 aaagtaatattttgtttgcaatttacaaaagaatattaatccttaacgaatat 290  Q
    |||||||  ||||||||| |||||||||||||| || ||| ||||||||||||    
T  36690307 aaagtaaagttttgtttgaaatttacaaaagaacatcaattcttaacgaatat 36690359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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