View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0772_low_6 (Length: 402)

Name: NF0772_low_6
Description: NF0772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0772_low_6
NF0772_low_6
[»] chr4 (6 HSPs)
chr4 (1-145)||(5228636-5228780)
chr4 (207-389)||(5228459-5228643)
chr4 (251-364)||(44841924-44842037)
chr4 (251-341)||(51387083-51387173)
chr4 (274-335)||(14527540-14527601)
chr4 (251-352)||(45393981-45394082)
[»] chr2 (3 HSPs)
chr2 (251-364)||(20606856-20606969)
chr2 (309-389)||(38137790-38137874)
chr2 (251-352)||(40584316-40584417)
[»] chr7 (2 HSPs)
chr7 (250-364)||(30581201-30581315)
chr7 (250-352)||(36611685-36611787)
[»] chr6 (1 HSPs)
chr6 (251-315)||(2741383-2741447)
[»] chr1 (1 HSPs)
chr1 (260-307)||(17932835-17932882)


Alignment Details
Target: chr4 (Bit Score: 121; Significance: 7e-62; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 5228780 - 5228636
Alignment:
Q  1 actgaatgagatgagtcgaaataacttttggctcagctggcgagaaaccgagccaactacaaactaaatgccataaagaatgattatatataattgaata 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |  |||||||||||||||||||||||    
T  5228780 actgaatgagatgagccgaaataacttttggctcagctggcgagaaaccgagccaattacaaactaaatgccacagggaatgattatatataattgaata 5228681  T
Q  101 tacaacatatatcactccatagtgcgtaagaggttactctagttg 145  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  5228680 tacaacatatatcactccatagtgcgtaagaggttactcttgttg 5228636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 207 - 389
Target Start/End: Complemental strand, 5228643 - 5228459
Alignment:
Q  207 tcttgttgttgtgtaaacgttctccaagtctcaatactttgtagggtgaattataaggtgaaggttaaattaagtccctcatcggtgaaccattataaac 306  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||||| || |||||  ||| |||||| ||| ||| ||||||||||||||||||    
T  5228643 tcttgttgttgtgtaaaccttctccaagtctcaatactttatagggtgaattttagggtgagtgttcaattaaatccatcaccggtgaaccattataaac 5228544  T
Q  307 aataattaaaaatcattggatcaatcaagcacacaaattctattatgcactctatgc-----atctttttgtctcctctcccatcttc 389  Q
    ||||||||| |    ||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||    
T  5228543 aataattaaga---gttggatcaatcaagcacacaaattctattatgcactctatgcatcagatctttttgtctcctctcccatcttc 5228459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 251 - 364
Target Start/End: Original strand, 44841924 - 44842037
Alignment:
Q  251 ggtgaattataaggtgaaggttaaattaagtccctcatcggtgaaccattataaacaataattaaaaatcattggatcaatcaagcacacaaattctatt 350  Q
    |||||||| || | |||| ||| |||||||||||||| |  ||| |||| ||||||||||||| | |  |||| |||||||||||| |||| ||||||||    
T  44841924 ggtgaattctaggatgaaagttcaattaagtccctcaacaatgagccatcataaacaataattgagagccattagatcaatcaagctcacacattctatt 44842023  T
Q  351 atgcactctatgca 364  Q
    || |||||||||||    
T  44842024 atacactctatgca 44842037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 341
Target Start/End: Complemental strand, 51387173 - 51387083
Alignment:
Q  251 ggtgaattataaggtgaaggttaaattaagtccctcatcggtgaaccattataaacaataattaaaaatcattggatcaatcaagcacaca 341  Q
    |||| |||||| ||||| || | ||||| |||||||| |||||||||| ||  || ||||||||||| ||||| ||| ||||||| |||||    
T  51387173 ggtggattatagggtgagggatcaattacgtccctcaccggtgaaccactacgaataataattaaaagtcattagattaatcaagtacaca 51387083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 335
Target Start/End: Complemental strand, 14527601 - 14527540
Alignment:
Q  274 aattaagtccctcatcggtgaaccattataaacaataattaaaaatcattggatcaatcaag 335  Q
    |||||||||||||| |||||||||| ||| || ||||||||| | ||||| ||| |||||||    
T  14527601 aattaagtccctcaccggtgaaccactatgaataataattaagagtcattagattaatcaag 14527540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 352
Target Start/End: Original strand, 45393981 - 45394082
Alignment:
Q  251 ggtgaattataaggtgaaggttaaattaagtccctcatcggtgaaccattataaacaataattaaaaatcattggatcaatcaagcacacaaattctatt 350  Q
    |||||||| ||  |||| |||| ||||||||| || | |||||||||| ||| |||||||||| | |  |||| |||||||||||| || | ||||||||    
T  45393981 ggtgaattctagagtgagggttcaattaagtctcttaccggtgaaccactattaacaataattgagagccattagatcaatcaagcgcatatattctatt 45394080  T
Q  351 at 352  Q
    ||    
T  45394081 at 45394082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 251 - 364
Target Start/End: Complemental strand, 20606969 - 20606856
Alignment:
Q  251 ggtgaattataaggtgaaggttaaattaagtccctcatcggtgaaccattataaacaataattaaaaatcattggatcaatcaagcacacaaattctatt 350  Q
    |||||||| || ||||| |||| |||||||||||||| |||||||||| |||||||||||||||| |  |||| |||||||||||   | | ||||||||    
T  20606969 ggtgaattctagggtgagggttcaattaagtccctcaccggtgaaccactataaacaataattaagagccattagatcaatcaagagtatagattctatt 20606870  T
Q  351 atgcactctatgca 364  Q
    || |||| ||||||    
T  20606869 atacactatatgca 20606856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 389
Target Start/End: Original strand, 38137790 - 38137874
Alignment:
Q  309 taattaaaaatcattggatcaatcaagcacacaaattctattatgcactctatgcatct-----ttttgtctcctctcccatcttc 389  Q
    ||||||| || |||||||||||| |||| ||| ||| |||||||||||||||||||||      |||||||||||||| |||||||    
T  38137790 taattaagaaccattggatcaataaagcgcacgaat-ctattatgcactctatgcatccgatcattttgtctcctctctcatcttc 38137874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 352
Target Start/End: Complemental strand, 40584417 - 40584316
Alignment:
Q  251 ggtgaattataaggtgaaggttaaattaagtccctcatcggtgaaccattataaacaataattaaaaatcattggatcaatcaagcacacaaattctatt 350  Q
    ||||||||||| ||||| |||| || || |||||||| ||||||||||   | |||||||||| | |  |||| |||||||||||| || | ||||||||    
T  40584417 ggtgaattatagggtgagggttcaactaggtccctcaccggtgaaccaccgttaacaataattgagagccattagatcaatcaagcgcatagattctatt 40584318  T
Q  351 at 352  Q
    ||    
T  40584317 at 40584316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 250 - 364
Target Start/End: Complemental strand, 30581315 - 30581201
Alignment:
Q  250 gggtgaattataaggtgaaggttaaattaagtccctcatcggtgaaccattataaacaataattaaaaatcattggatcaatcaagcacacaaattctat 349  Q
    ||||||||| || ||||| |||| |||||||||||||| | |||||||| |||||||||||||||| |  |||| |||||||||||   | | |||||||    
T  30581315 gggtgaattctagggtgagggttcaattaagtccctcaccagtgaaccactataaacaataattaagagccattagatcaatcaagagtatagattctat 30581216  T
Q  350 tatgcactctatgca 364  Q
    ||| |||| ||||||    
T  30581215 tatacactatatgca 30581201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 352
Target Start/End: Complemental strand, 36611787 - 36611685
Alignment:
Q  250 gggtgaattataaggtgaaggttaaattaagtccctcatcggtgaaccattataaacaataattaaaaatcattggatcaatcaagcacacaaattctat 349  Q
    |||| |||| || ||||| |||| |||||||||||||||| |||||||| | ||||||| |||||| |||| || ||| |||||||  |||| ||| |||    
T  36611787 gggtaaattttagggtgagggttcaattaagtccctcatcagtgaaccactgtaaacaacaattaagaatcgttagattaatcaagtgcacatattttat 36611688  T
Q  350 tat 352  Q
    |||    
T  36611687 tat 36611685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 315
Target Start/End: Complemental strand, 2741447 - 2741383
Alignment:
Q  251 ggtgaattataaggtgaaggttaaattaagtccctcatcggtgaaccattataaacaataattaa 315  Q
    |||||||| |||||||| |||| ||| |||||||||| |||||||||||||| || | |||||||    
T  2741447 ggtgaattctaaggtgatggtttaatcaagtccctcaccggtgaaccattatcaaaattaattaa 2741383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 307
Target Start/End: Original strand, 17932835 - 17932882
Alignment:
Q  260 taaggtgaaggttaaattaagtccctcatcggtgaaccattataaaca 307  Q
    ||||||||||||| ||||||||| ||||||| |||||||||| |||||    
T  17932835 taaggtgaaggttcaattaagtcgctcatcgatgaaccattaaaaaca 17932882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 3874 times since January 2019
Visitors: 4823