View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0772_low_7 (Length: 400)
Name: NF0772_low_7
Description: NF0772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0772_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 28 - 333
Target Start/End: Original strand, 50505344 - 50505649
Alignment:
| Q |
28 |
acttctttagcaaaaagggaaagttgttgaaaatgttcacactccaaataggacgagctcatatttaattgtgaacatcttatataggtataggcttgat |
127 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50505344 |
acttctttagcaaaaagggaaagttgttgaaaatgttcacattccaaataggacgagctcatatttaattgtgaacatcttatataggtataggcttgat |
50505443 |
T |
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| Q |
128 |
cttgaagtgaagcgaaataagattgagaacaaagcacctcaaatcctgcaaaaatatttagtataactaataggaataagcaaaggcattatctgataag |
227 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50505444 |
cttgaagtgaagtgaaataagattgagaacaaagcacctcaaatcctgcaaaaatatttagtataactaataggaataagcaaaggcattatctgataag |
50505543 |
T |
|
| Q |
228 |
aaaaatacaagctaaacaaaatactaacatatcatggcttcatggggaatatagaaatcattatctaaaacatgatgaaaccattgcataacagcggact |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50505544 |
aaaaatacaagctaaacaaaatactaacatatcatggcttcatggggaatatagaaatcattatctaaaacatgatgaaaccattgcataacagcggact |
50505643 |
T |
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| Q |
328 |
tttaaa |
333 |
Q |
| |
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|||||| |
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| T |
50505644 |
tttaaa |
50505649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 329 - 398
Target Start/End: Original strand, 50505682 - 50505751
Alignment:
| Q |
329 |
ttaaatccattgcataaactatatcggtgatttttaggttcgtgtatgatagtgattgatctgtgctgct |
398 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
50505682 |
ttaaaaccattgcataaactatatcggtgatttttaggttcgtgtatgatagtgattgatgtgtgttgct |
50505751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 55280860 - 55280797
Alignment:
| Q |
116 |
tataggcttgatcttgaagtgaagcgaaataagattgagaacaaagcacctcaaatcctgcaaa |
179 |
Q |
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|||||||||||||||||||||||| ||||||||| || ||||||||| |||||||||||||| |
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| T |
55280860 |
tataggcttgatcttgaagtgaagtgaaataagagagaagacaaagcacttcaaatcctgcaaa |
55280797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 178; Significance: 7e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 28 - 307
Target Start/End: Complemental strand, 28733888 - 28733612
Alignment:
| Q |
28 |
acttctttagcaaaaagggaaagttgttgaaaatgttcacactccaaataggacgagctcatatttaattgtgaacatcttatataggtataggcttgat |
127 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||| | ||||||| |||||| |||| || ||||||||||||||||||||||||||| |
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| T |
28733888 |
acttctttagcaaaaaggaaaagttgttgaaaatgttcacattcccagcaggacgaactcataattaacagtaaacatcttatataggtataggcttgat |
28733789 |
T |
|
| Q |
128 |
cttgaagtgaagcgaaataagattgagaacaaagcacctcaaatcctgcaaaaatatttagtataactaataggaataagcaaaggcattatctgataag |
227 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||| |||| ||||| |||||||||||||| |
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| T |
28733788 |
cttgaagtgaagtgaaataagattgagaacaaagcacttcaaatcctgcaaaaatgtt---tataattaataggcataaacaaagacattatctgataag |
28733692 |
T |
|
| Q |
228 |
aaaaatacaagctaaacaaaatactaacatatcatggcttcatggggaatatagaaatcattatctaaaacatgatgaaa |
307 |
Q |
| |
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||||||| |||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||| |
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| T |
28733691 |
aaaaatataagcaaaacaaaatactaacatatcatggcctcatggggaatatataaatcattatctaaaatatgatgaaa |
28733612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 335 - 388
Target Start/End: Complemental strand, 28733552 - 28733499
Alignment:
| Q |
335 |
ccattgcataaactatatcggtgatttttaggttcgtgtatgatagtgattgat |
388 |
Q |
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|||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
28733552 |
ccattgcataaactatattggtgatttttaggttcgtgcatgatagtgattgat |
28733499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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