View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0772_low_9 (Length: 367)

Name: NF0772_low_9
Description: NF0772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0772_low_9
NF0772_low_9
[»] chr2 (5 HSPs)
chr2 (99-220)||(33078027-33078149)
chr2 (244-297)||(33077950-33078003)
chr2 (97-161)||(36613304-36613368)
chr2 (97-161)||(36621155-36621219)
chr2 (97-167)||(31807816-31807886)
[»] chr6 (1 HSPs)
chr6 (97-167)||(3435773-3435843)
[»] chr5 (2 HSPs)
chr5 (97-194)||(20869312-20869409)
chr5 (97-167)||(36784206-36784276)
[»] chr3 (4 HSPs)
chr3 (97-158)||(22926413-22926474)
chr3 (97-167)||(46799040-46799110)
chr3 (110-168)||(26843051-26843109)
chr3 (97-137)||(52796278-52796318)
[»] chr7 (4 HSPs)
chr7 (97-167)||(23701811-23701882)
chr7 (99-158)||(35035660-35035719)
chr7 (97-167)||(30703760-30703830)
chr7 (97-167)||(41616176-41616246)
[»] chr1 (3 HSPs)
chr1 (99-167)||(35159699-35159767)
chr1 (99-167)||(52435427-52435495)
chr1 (101-149)||(34502896-34502944)
[»] chr8 (2 HSPs)
chr8 (97-158)||(13068269-13068330)
chr8 (110-174)||(5788428-5788493)
[»] chr4 (3 HSPs)
chr4 (110-170)||(21622702-21622762)
chr4 (109-167)||(44655102-44655160)
chr4 (97-161)||(43730808-43730872)


Alignment Details
Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 99 - 220
Target Start/End: Complemental strand, 33078149 - 33078027
Alignment:
Q  99 actttttaatcttttaatgcattgaatacatagctttcaatgcaagtattactatatttgttttcttaatcggtgtctgcgggcaccggataacatg-ac 197  Q
    ||||||||||||||||||||||||| |||  |||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||| ||||||| |     
T  33078149 actttttaatcttttaatgcattgattactcagctttcaatgcaaatattactatatttgcttccttaaccggtgtctgcgggcaccggttaacatgaaa 33078050  T
Q  198 ccttttttaatttccctcttctt 220  Q
    | |||||||||||||||||||||    
T  33078049 ctttttttaatttccctcttctt 33078027  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 33078003 - 33077950
Alignment:
Q  244 tgagagagaagaagagtagtagacttggaagacataagaggaatgatattattc 297  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  33078003 tgagagagaagaagagtagtagacttggaagacataagtggaatgatatgattc 33077950  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 36613368 - 36613304
Alignment:
Q  97 acactttttaatcttttaatgcattgaatacatagctttcaatgcaagtattactatatttgttt 161  Q
    |||||||||||  ||| |||||||||| |||| | ||||| |||||| |||||||||||||||||    
T  36613368 acactttttaagttttgaatgcattgattacacaactttccatgcaaatattactatatttgttt 36613304  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 36621219 - 36621155
Alignment:
Q  97 acactttttaatcttttaatgcattgaatacatagctttcaatgcaagtattactatatttgttt 161  Q
    |||||||||||  ||| |||||||||| |||| | ||||| |||||| |||||||||||||||||    
T  36621219 acactttttaagttttgaatgcattgattacacaactttccatgcaaatattactatatttgttt 36621155  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 31807816 - 31807886
Alignment:
Q  97 acactttttaatcttttaatgcattgaatacatagctttcaatgcaagtattactatatttgttttcttaa 167  Q
    ||||||||||| ||||||||||||||| |||| | |||||||   || |||||||||||||| || |||||    
T  31807816 acactttttaagcttttaatgcattgattacacaactttcaacataaatattactatatttgcttccttaa 31807886  T

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Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 3435773 - 3435843
Alignment:
Q  97 acactttttaatcttttaatgcattgaatacatagctttcaatgcaagtattactatatttgttttcttaa 167  Q
    |||||||||||  || ||||||||||| |||||| |||||||||||| |||||||||||||||||||||||    
T  3435773 acactttttaagtttataatgcattgattacataactttcaatgcaaatattactatatttgttttcttaa 3435843  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 97 - 194
Target Start/End: Complemental strand, 20869409 - 20869312
Alignment:
Q  97 acactttttaatcttttaatgcattgaatacatagctttcaatgcaagtattactatatttgttttcttaatcggtgtctgcgggcaccggataacat 194  Q
    ||||||||||| ||||||||||||||| |||| | |||||||||||| || ||| ||||||| || ||||| | ||| ||| ||||||||| ||||||    
T  20869409 acactttttaagcttttaatgcattgattacacaactttcaatgcaaatactaccatatttgattccttaaccagtgcctgagggcaccggttaacat 20869312  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 36784276 - 36784206
Alignment:
Q  97 acactttttaatcttttaatgcattgaatacatagctttcaatgcaagtattactatatttgttttcttaa 167  Q
    ||||||||||||||||||||| ||||| |||| |||||||||||||| ||||| ||| |||| || |||||    
T  36784276 acactttttaatcttttaatgtattgattacacagctttcaatgcaaatattattatgtttgcttccttaa 36784206  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 22926413 - 22926474
Alignment:
Q  97 acactttttaatcttttaatgcattgaatacatagctttcaatgcaagtattactatatttg 158  Q
    ||||||||||| ||||||||||||||| |||| | |||||||||||| ||||||||||||||    
T  22926413 acactttttaaacttttaatgcattgattacacaactttcaatgcaaatattactatatttg 22926474  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 46799040 - 46799110
Alignment:
Q  97 acactttttaatcttttaatgcattgaatacatagctttcaatgcaagtattactatatttgttttcttaa 167  Q
    ||||||||||| ||||||||||||||| |||| | |||| |||||||  ||||||||||||| || |||||    
T  46799040 acactttttaagcttttaatgcattgattacacatcttttaatgcaaaaattactatatttgcttccttaa 46799110  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 26843109 - 26843051
Alignment:
Q  110 ttttaatgcattgaatacatagctttcaatgcaagtattactatatttgttttcttaat 168  Q
    |||||||||||||| | || || |||||| |||| ||||||||||||||||| ||||||    
T  26843109 ttttaatgcattgatttcacagttttcaaagcaaatattactatatttgtttccttaat 26843051  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 52796278 - 52796318
Alignment:
Q  97 acactttttaatcttttaatgcattgaatacatagctttca 137  Q
    ||||||||||||||||||||||||||| |||| || |||||    
T  52796278 acactttttaatcttttaatgcattgattacacagttttca 52796318  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 23701882 - 23701811
Alignment:
Q  97 acactttttaatcttttaatgcattgaatacatagctttcaatg-caagtattactatatttgttttcttaa 167  Q
    |||||||||||  |||||||||||||| ||||||||||||||||  || |||||||||||||| ||||||||    
T  23701882 acactttttaagtttttaatgcattgactacatagctttcaatgtaaaatattactatatttgatttcttaa 23701811  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 158
Target Start/End: Original strand, 35035660 - 35035719
Alignment:
Q  99 actttttaatcttttaatgcattgaatacatagctttcaatgcaagtattactatatttg 158  Q
    ||||||||| |||||||||||||||||||| | |||||||| |||  |||||||||||||    
T  35035660 actttttaagcttttaatgcattgaatacacaactttcaatacaaaaattactatatttg 35035719  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 30703760 - 30703830
Alignment:
Q  97 acactttttaatcttttaatgcattgaatacatagctttcaatgcaagtattactatatttgttttcttaa 167  Q
    |||||| |||||||||||||||||||| |||| | ||||||||  || |||||||||||||| || |||||    
T  30703760 acacttgttaatcttttaatgcattgattacacaactttcaatttaaatattactatatttgcttccttaa 30703830  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 41616246 - 41616176
Alignment:
Q  97 acactttttaatcttttaatgcattgaatacatagctttcaatgcaagtattactatatttgttttcttaa 167  Q
    |||||| ||||| |||||||||||| | |||| | ||||||||| || ||||||||||||||||| |||||    
T  41616246 acacttattaattttttaatgcattaattacacatctttcaatgtaaatattactatatttgtttccttaa 41616176  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 99 - 167
Target Start/End: Complemental strand, 35159767 - 35159699
Alignment:
Q  99 actttttaatcttttaatgcattgaatacatagctttcaatgcaagtattactatatttgttttcttaa 167  Q
    ||||||||| ||||||||||||||| |||| | ||||||||||||  |||||||||||| || ||||||    
T  35159767 actttttaaacttttaatgcattgattacacatctttcaatgcaaaaattactatatttattctcttaa 35159699  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 52435427 - 52435495
Alignment:
Q  99 actttttaatcttttaatgcattgaatacatagctttcaatgcaagtattactatatttgttttcttaa 167  Q
    ||||||||||||||||||||||||| || | || ||||||||||| ||||| |||||||| || |||||    
T  52435427 actttttaatcttttaatgcattgattatacagttttcaatgcaaatattattatatttgcttccttaa 52435495  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 34502896 - 34502944
Alignment:
Q  101 tttttaatcttttaatgcattgaatacatagctttcaatgcaagtatta 149  Q
    ||||||| ||||||||||||||| |||| | |||||||||||| |||||    
T  34502896 tttttaagcttttaatgcattgattacacaactttcaatgcaaatatta 34502944  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 13068269 - 13068330
Alignment:
Q  97 acactttttaatcttttaatgcattgaatacatagctttcaatgcaagtattactatatttg 158  Q
    ||||||||||| |||||||| |||||| |||| | |||||||||||| ||||| ||||||||    
T  13068269 acactttttaaacttttaatacattgattacacaactttcaatgcaaatattattatatttg 13068330  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 5788493 - 5788428
Alignment:
Q  110 ttttaatgcattgaatacatagctttcaatgcaag-tattactatatttgttttcttaatcggtgt 174  Q
    ||||||||||||||||||| | |||| |||  ||  |||||||||||||| |||||||||||||||    
T  5788493 ttttaatgcattgaatacacaacttttaatataaaatattactatatttgatttcttaatcggtgt 5788428  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 21622702 - 21622762
Alignment:
Q  110 ttttaatgcattgaatacatagctttcaatgcaagtattactatatttgttttcttaatcg 170  Q
    |||||||||||||| |||| | ||||||||| || |||||||||||||| || ||||||||    
T  21622702 ttttaatgcattgattacacaactttcaatgtaaatattactatatttgcttccttaatcg 21622762  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 44655102 - 44655160
Alignment:
Q  109 cttttaatgcattgaatacatagctttcaatgcaagtattactatatttgttttcttaa 167  Q
    ||||||||||||||| |||| | ||| |||||||| |||||||||||||| || |||||    
T  44655102 cttttaatgcattgattacagaacttccaatgcaaatattactatatttgcttccttaa 44655160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 43730872 - 43730808
Alignment:
Q  97 acactttttaatcttttaatgcattgaatacatagctttcaatgcaagtattactatatttgttt 161  Q
    |||||| ||||  |||||||| ||| |||||||  ||||||||| |||||||| |||||||||||    
T  43730872 acacttcttaagtttttaatgtattaaatacatgactttcaatgtaagtattattatatttgttt 43730808  T

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