View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0773_high_16 (Length: 262)

Name: NF0773_high_16
Description: NF0773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0773_high_16
NF0773_high_16
[»] chr4 (3 HSPs)
chr4 (29-235)||(11567720-11567916)
chr4 (28-217)||(11566991-11567176)
chr4 (30-104)||(35298660-35298734)
[»] chr3 (2 HSPs)
chr3 (40-235)||(7959220-7959415)
chr3 (27-217)||(7959953-7960144)
[»] chr5 (4 HSPs)
chr5 (30-235)||(5301857-5302056)
chr5 (30-104)||(28991647-28991721)
chr5 (132-217)||(5289417-5289503)
chr5 (62-110)||(24894558-24894606)
[»] chr1 (5 HSPs)
chr1 (28-104)||(37581053-37581129)
chr1 (28-104)||(37581604-37581680)
chr1 (30-96)||(32367294-32367360)
chr1 (40-96)||(32369591-32369648)
chr1 (32-74)||(7742153-7742195)
[»] chr2 (1 HSPs)
chr2 (29-97)||(17252911-17252979)


Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 29 - 235
Target Start/End: Complemental strand, 11567916 - 11567720
Alignment:
Q  29 agagaaattcttgcatgcaaacgcacctaacacataaggttttacaaacaaccactaataacttgacacgtcatttatttatgttnnnnnnnnnnnnnnn 128  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||                   
T  11567916 agagaaattcttgcatgcaaacacacctaacacataaggttttacaaacaactactaataacttaacacctcatttatttatgttaaaatttt------- 11567824  T
Q  129 nnntttttggaaataatgaagctgtcgtgcagcatttctctctcgtgtagtggcacttccaaaccgtttcttcttcttttgttttctctatgaacttttt 228  Q
       |||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11567823 ---tttttggaaatattgaagttgtcgtgcagtatttctctctcgtgtagtggcacttccaaaccgtttcttcttcttttgttttctctatgaacttttt 11567727  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 28 - 217
Target Start/End: Original strand, 11566991 - 11567176
Alignment:
Q  28 aagagaaattcttgcatgcaaacgcacctaacacataaggttttacaaacaaccactaataacttgacacgtcatttatttatgttnnnnnnnnnnnnnn 127  Q
    |||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||                  
T  11566991 aagagaaatttttgcatgcaaacgtacctaacacataaggtttaacaaacaaccactaataacttgacacctcatttatttatgttaaaaaaaaaaaaaa 11567090  T
Q  128 nnnntttttggaaataatgaagctgtc-gtgcagcatttctctctcgtgtagtggcacttccaaacc-gtttcttcttcttttgttttctct 217  Q
           ||||||||| ||||| |||| |||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||||||    
T  11567091 a------ttggaaatattgaagttgtcagtgcagcatttccctctcgtgtagtggcacttccaaaccatttttttcttcttttgttttctct 11567176  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 35298660 - 35298734
Alignment:
Q  30 gagaaattcttgcatgcaaacgcacctaacacataaggttttacaaacaaccactaataacttgacacgtcattt 104  Q
    |||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||| || |||| ||||||    
T  35298660 gagaaattattgcatgcaaacacacctaacacataagattttacaaacaaccactaataatttaacacctcattt 35298734  T

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Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 40 - 235
Target Start/End: Original strand, 7959220 - 7959415
Alignment:
Q  40 tgcatgcaaacgcacctaacacataaggttttacaaacaaccactaataacttgacacgtcatttatttatgttnnnnnnnnnnnnnnnnnntttttgga 139  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||| ||||                   |||||||    
T  7959220 tgcatgcaaacgcacctaacacatacggttttacaaacaactactaataacttgacacctcatttatttttgttaaaaaaatagaaaaaaaaattttgga 7959319  T
Q  140 aataatgaagctgtcgtgcagcatttctctctcgtgtagtggcacttccaaaccgtttcttcttcttttgttttctctatgaactttttctacatg 235  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7959320 aatattgaagctgtcgtgcagcatttctctctcgtgtagtggcacttccaaaccgtttcttcttcttttgttttctctatgaactttttctacatg 7959415  T

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Target: chr3; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 27 - 217
Target Start/End: Complemental strand, 7960144 - 7959953
Alignment:
Q  27 gaagagaaattcttgcatgcaaacgcacctaacacataaggttttacaaacaaccactaataacttgacacgtcatttatttatgttnnnnnnnnnnnnn 126  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||                 
T  7960144 gaagagaaattcttgtatgcaaacgcacctaacacataaggttttacaaacaaccactaataacttgacacctcatttatttattttaaaaaaataaaat 7960045  T
Q  127 nnnnntttttggaaataatgaagctgtcgtgcagcatttctctctcgtgtagtggcacttccaaacc-gtttcttcttcttttgttttctct 217  Q
           |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||    
T  7960044 aaaaaaatttgaaaatattgaagctgtcgtgcagcatttctctctcgtgtagtggcacttccaaaccatttttttcttcttttgttttctct 7959953  T

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Target: chr5 (Bit Score: 114; Significance: 7e-58; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 30 - 235
Target Start/End: Complemental strand, 5302056 - 5301857
Alignment:
Q  30 gagaaattcttgcatgcaaacgcacctaacacataaggttttacaaacaaccactaataacttgacacgtcatttatttatgttnnnnnnnnnnnnnnnn 129  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||                    
T  5302056 gagaaattcttgcatgcaaacacacctaacacataaggttttacaaacaaccactaataacttgacacctcatttatttatgttaaaaaaaataaaaaa- 5301958  T
Q  130 nntttttggaaataatgaagctgtcgtgcagcatttctctctcgtgtagtggcacttccaaaccgtttcttcttcttttgttttctctatgaactttttc 229  Q
         ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  5301957 -----ttggaaatattgaagctgtggtgcagcatttctctctcgtgtagtggcacttccaaaccgtttcttcttcttttgttttctctatgatttttttc 5301863  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 28991721 - 28991647
Alignment:
Q  30 gagaaattcttgcatgcaaacgcacctaacacataaggttttacaaacaaccactaataacttgacacgtcattt 104  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||| ||||||    
T  28991721 gagaaattcttgcatgcaaacgcaccgaacacataaggttttacaaacaaccactaataagttaacacctcattt 28991647  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 217
Target Start/End: Original strand, 5289417 - 5289503
Alignment:
Q  132 tttttggaaataatgaagctgtcgtgcagcatttctctctcgtgtagtggcacttccaaacc-gtttcttcttcttttgttttctct 217  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||  ||| |||||||||||||||||||    
T  5289417 tttttagaaatattgaagctgtcgtgcagcatttctctctcgtgtagtgccactttcaaaccatttttttcttcttttgttttctct 5289503  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 24894606 - 24894558
Alignment:
Q  62 ataaggttttacaaacaaccactaataacttgacacgtcatttatttat 110  Q
    |||||||||||||||||| |||| | |||||||||| ||||||||||||    
T  24894606 ataaggttttacaaacaagcactgacaacttgacacctcatttatttat 24894558  T

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Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 37581053 - 37581129
Alignment:
Q  28 aagagaaattcttgcatgcaaacgcacctaacacataaggttttacaaacaaccactaataacttgacacgtcattt 104  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  37581053 aagagaaattcttgcatgcaaacgcacctaacacataagattttacaaacaaccactaataacttgacacctcattt 37581129  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 37581680 - 37581604
Alignment:
Q  28 aagagaaattcttgcatgcaaacgcacctaacacataaggttttacaaacaaccactaataacttgacacgtcattt 104  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  37581680 aagagaaattcttgcatgcaaacacacctaacacataagattttacaaacaaccactaataacttgacacctcattt 37581604  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 32367294 - 32367360
Alignment:
Q  30 gagaaattcttgcatgcaaacgcacctaacacataaggttttacaaacaaccactaataacttgaca 96  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  32367294 gagaaattattgcatgcaaacgcacctaacatataaggttttacaaacaaccactaataacttgaca 32367360  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 32369648 - 32369591
Alignment:
Q  40 tgcatgcaaacgcacctaacacataa-ggttttacaaacaaccactaataacttgaca 96  Q
    |||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||    
T  32369648 tgcatgcaaacgcacctaacacataagggttttataaacaacaactaataacttgaca 32369591  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 7742195 - 7742153
Alignment:
Q  32 gaaattcttgcatgcaaacgcacctaacacataaggttttaca 74  Q
    |||||||||||||||||| |||||||||  |||||||||||||    
T  7742195 gaaattcttgcatgcaaatgcacctaacgtataaggttttaca 7742153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 17252911 - 17252979
Alignment:
Q  29 agagaaattcttgcatgcaaacgcacctaacacataaggttttacaaacaaccactaataacttgacac 97  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  17252911 agagaaatttttgcatgcaaacgcacctaacacataaggttttacgaacaaccactaataacttgacac 17252979  T

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