View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0773_high_2 (Length: 408)
Name: NF0773_high_2
Description: NF0773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0773_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 50 - 345
Target Start/End: Complemental strand, 32846422 - 32846137
Alignment:
| Q |
50 |
tcatcacgaatcaggtgatccccaaagagctatatgttgcatgaagtacctaaaaagtagtatttgaaattaccttgtatacatacatatacatatatag |
149 |
Q |
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| T |
32846422 |
tcatcacaaatcaggtgatccccaaagagctatatgttgcatgaagtacctaaaaagtagtatttgaaattaccttgtatacata----------tatag |
32846333 |
T |
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| Q |
150 |
taagttaaatataagctcaattgtgagacgggaaacaagaactgcagtgggtgagccatactatcatccatagatagaaaatataaaacaaataacttaa |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32846332 |
taagttaaatataagctcaattgtgagacgggaaacaagaactgcagtgggtgagccacactatcatccatagatagaaaatataaaacaaataacctaa |
32846233 |
T |
|
| Q |
250 |
gtataacaaagtcaagtataaaatagggttatctgatctaaactccaaattaataaatttgaatgaactcttgtacacaactcatgatatagctct |
345 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32846232 |
gtatacaaaagtcaagtataaaatagggttatctgatctaaactccaaatttataaatttgaatgaactcttgtacacaactcatgatatagctct |
32846137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 340 - 400
Target Start/End: Original strand, 28035872 - 28035932
Alignment:
| Q |
340 |
agctctagctgccattgctttcatttgtgcctttgtttcaggatcttcaaattctctccct |
400 |
Q |
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| T |
28035872 |
agctctagctgccattgctttcatttgtgcctttgtttcaggatcttcaaattctctccct |
28035932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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