View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0773_high_5 (Length: 393)
Name: NF0773_high_5
Description: NF0773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0773_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 8450967 - 8450639
Alignment:
| Q |
1 |
ttgttctattatactttttccttaaatatgatttgttctattatattttttggtacatgcatgataattacacgatgaaatatgtattatatttagatag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
8450967 |
ttgttctattatactttttccttaaatatgatttgttctattatattttttggtacatgcatgataattacatgatgaaatatgtattatatttagatag |
8450868 |
T |
|
| Q |
101 |
atacaaaacgtctcacatggaaggattctctatgattgtaggctagctaattgcacagtgacaatttttcaaagcaaaagaaagacgtcccacatcgaaa |
200 |
Q |
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|||||||||||| ||||||||||||| |||| | ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
8450867 |
atacaaaacgtcccacatggaaggatactctgtaattgtaggctagctaattgcatagtgacaatttttgaaagcaaaagaaagacgtcccacatcgaaa |
8450768 |
T |
|
| Q |
201 |
actctgtgaaatattgagagtgactgagctataaaaccaaagcattccttgtattgagtgaaatgtggctttgcttttgagtcgattgac-aattgcatt |
299 |
Q |
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||| ||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||| |||||||||||||| || |||||| |
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| T |
8450767 |
actttgtgaaatattgagagtgactgagctataaaactaacgcattccttgcattgagtgaaatgtggctttgctgttgagtcgattgacaaaatgcatt |
8450668 |
T |
|
| Q |
300 |
atatattgcatctgctccaattatttctt |
328 |
Q |
| |
|
||||||||||||| ||||||||||||||| |
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| T |
8450667 |
atatattgcatctactccaattatttctt |
8450639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 8428470 - 8428798
Alignment:
| Q |
1 |
ttgttctattatactttttccttaaatatgatttgttctattatattttttggtacatgcatgataattacacgatgaaatatgtattatatttagatag |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
8428470 |
ttgttctattatactttttccttaaatatgatttgttctatcatatgttttggtacatgcatgataattacatgatgaaatatgtattatatttagatag |
8428569 |
T |
|
| Q |
101 |
atacaaaacgtctcacatggaaggattctctatgattgtaggctagctaattgcacagtgacaatttttcaaagcaaaagaaagacgtcccacatcgaaa |
200 |
Q |
| |
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|||||||||||| ||||||||||||| |||| | ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
8428570 |
atacaaaacgtcccacatggaaggatactctgtaattgtaggctagctaattgcatagtgacaatttttgaaagcaaaagaaagacgtcccacatcgaaa |
8428669 |
T |
|
| Q |
201 |
actctgtgaaatattgagagtgactgagctataaaaccaaagcattccttgtattgagtgaaatgtggctttgcttttgagtcgattgac-aattgcatt |
299 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||| |||||||||||||| || |||||| |
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| T |
8428670 |
actttgtgaaatattgagagtgactgagctataaaactaacgcattccttgcattgagtgaaatgtggctttgctgttgagtcgattgacaaaatgcatt |
8428769 |
T |
|
| Q |
300 |
atatattgcatctgctccaattatttctt |
328 |
Q |
| |
|
||||||||||||| ||||||||||||||| |
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| T |
8428770 |
atatattgcatctactccaattatttctt |
8428798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 22 - 237
Target Start/End: Complemental strand, 8349924 - 8349704
Alignment:
| Q |
22 |
ttaaatatgatttgttctattatattttttggtacatgcatgataattacacgatgaaatatgtattatatttagatagatacaaaacgtctcacatgga |
121 |
Q |
| |
|
||||| || ||| ||||| ||||||||||||| ||||| | ||||||| | |||| ||||||||| ||| |||||||||||||||||||| |||||||| |
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|
| T |
8349924 |
ttaaacattattagttctgttatattttttggctcatgcctcataattaaatgatggaatatgtatcataattagatagatacaaaacgtcccacatgga |
8349825 |
T |
|
| Q |
122 |
aggattctctatgattgtaggctagctaattgcacagt-----gacaatttttcaaagcaaaagaaagacgtcccacatcgaaaactctgtgaaatattg |
216 |
Q |
| |
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||||| |||||| |||||||||||||||| || ||| | || | | ||||||||||||||| ||||||||||| ||||| |||||||| | | |
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|
| T |
8349824 |
aggatactctatacttgtaggctagctaatatcatagtcattagtcacaatatgaaagcaaaagaaagaagtcccacatcggaaactttgtgaaatgtag |
8349725 |
T |
|
| Q |
217 |
agagtgactgagctataaaac |
237 |
Q |
| |
|
||||||||||| ||||||||| |
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|
| T |
8349724 |
agagtgactgatctataaaac |
8349704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 32 - 237
Target Start/End: Complemental strand, 8437246 - 8437052
Alignment:
| Q |
32 |
tttgttctattatattttttggtacatgcatgataattacacgatgaaatatgtattatatttagatagatacaaaacgtctcacatggaaggattctct |
131 |
Q |
| |
|
|||||||| |||||||||||||||||||| | ||||||||| || || |||||||||||||||||||||||| |||||| |||||| || | |
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| T |
8437246 |
tttgttcttttatattttttggtacatgcctcataattacattat---------atcatatttagatagatacaaaacgtcccacatgaaaggatactgt |
8437156 |
T |
|
| Q |
132 |
atgattgtaggctagctaattgcacagtgacaatttttcaaagcaaaagaaagacgtcccacatcgaaaactctgtgaaatattgagagtgactgagcta |
231 |
Q |
| |
|
|| |||||| |||||||||| || |||||||| | | ||||||||||||||| ||||||||||| |||| |||||||| ||||||||| ||||||| |
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|
| T |
8437155 |
ataattgtaagctagctaatatcatagtgacaa--tatgaaagcaaaagaaagaagtcccacatcggaaacgttgtgaaatgatgagagtgagtgagcta |
8437058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 69 - 240
Target Start/End: Complemental strand, 8447713 - 8447544
Alignment:
| Q |
69 |
tacacgatgaaatatgtattatatttagatagatacaaaacgtctcacatggaaggattctctatgattgtaggctagctaattgcacagtgacaatttt |
168 |
Q |
| |
|
|||| ||| |||||| ||| |||||||||||||||| ||||||| |||||| ||||||||||||| |||||||||||| ||| | ||||| || || |
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|
| T |
8447713 |
tacatgataaaatatatatcatatttagatagatacgaaacgtcccacatgaaaggattctctatacttgtaggctagccaatatgatagtgataa--tt |
8447616 |
T |
|
| Q |
169 |
tcaaagcaaaagaaagacgtcccacatcgaaaactctgtgaaatattgagagtgactgagctataaaaccaa |
240 |
Q |
| |
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| ||||||||||||||| ||||||||||| | | | |||||||| ||||||||| |||||||||||||||| |
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|
| T |
8447615 |
tgaaagcaaaagaaagaagtcccacatcggataatttgtgaaatgatgagagtgagtgagctataaaaccaa |
8447544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 151
Target Start/End: Original strand, 8481193 - 8481322
Alignment:
| Q |
22 |
ttaaatatgatttgttctattatattttttggtacatgcatgataattacacgatgaaatatgtattatatttagatagatacaaaacgtctcacatgga |
121 |
Q |
| |
|
||||| || ||| ||||| ||||||||||||| ||||| | ||||||||| |||| ||||||||| ||| |||||||||||||||||||| ||||||| |
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|
| T |
8481193 |
ttaaacattattagttctgttatattttttggctcatgcctcataattacatgatggaatatgtatcataattagatagatacaaaacgtccgacatgga |
8481292 |
T |
|
| Q |
122 |
aggattctctatgattgtaggctagctaat |
151 |
Q |
| |
|
||||| |||||| |||||||||||||||| |
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|
| T |
8481293 |
aggatactctatacttgtaggctagctaat |
8481322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 237
Target Start/End: Original strand, 8481351 - 8481417
Alignment:
| Q |
171 |
aaagcaaaagaaagacgtcccacatcgaaaactctgtgaaatattgagagtgactgagctataaaac |
237 |
Q |
| |
|
||||||||||||||| || |||||||| ||||| | |||||| | |||||||||||| ||||||||| |
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|
| T |
8481351 |
aaagcaaaagaaagaagttccacatcggaaactttatgaaatgtagagagtgactgatctataaaac |
8481417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 8358054 - 8357990
Alignment:
| Q |
176 |
aaaagaaagacgtcccacatcgaaaactctgtgaaatattgagagtgactgagctataaaaccaa |
240 |
Q |
| |
|
|||||||||| ||||||||| | ||||| |||||||| | |||| ||| |||||||||||||||| |
|
|
| T |
8358054 |
aaaagaaagaagtcccacattggaaactttgtgaaatgtagagattgagtgagctataaaaccaa |
8357990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 8408668 - 8408607
Alignment:
| Q |
178 |
aagaaagacgtcccacatcgaaaactctgtgaaatattgagagtgactgagctataaaacca |
239 |
Q |
| |
|
|||||||| ||||||||||| ||||| | |||||| | ||||||| ||||||||||||||| |
|
|
| T |
8408668 |
aagaaagaagtcccacatcggaaactttttgaaatgtacagagtgaatgagctataaaacca |
8408607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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