View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0773_low_1 (Length: 504)
Name: NF0773_low_1
Description: NF0773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0773_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 8 - 476
Target Start/End: Complemental strand, 7761707 - 7761239
Alignment:
| Q |
8 |
gagcagagaggaatcggatattgaattgcagagatatagaaaggttccagatgctgagattcagggtgtattggaaatcagctacaatggcctatctgac |
107 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7761707 |
gagcatagaggaatgggatattgaattgcagagatatagaaaggttccagatgctgagattcagggtgtattggaaatcagctacaatggcctatctgac |
7761608 |
T |
|
| Q |
108 |
ttggaacaaaaagcttttctggacattgcttgttttttcaaaggggaaagatgggattatgttaaaaggatacaagaagcttgtgattttttcccagtta |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7761607 |
ttggaacaaaaagcttttctggacattgcttgttttttcaaaggggaaagatgggattatgttaaaaggatacaagaagcttgtgattttttcccagtta |
7761508 |
T |
|
| Q |
208 |
tacgagtatttgttagtaaatgtctcctaactgttgatgaaaatggttgtatagaaatgcatgatttaatacaagacatgggtagagagattgttcggaa |
307 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7761507 |
tacgagtatttgttagtaaatgtctcttaactgttgatgaaaatggttgtatagaaatgcatgatttaatacaagacatgggtagagagattgttcggaa |
7761408 |
T |
|
| Q |
308 |
ggagtcgacatcaaaccctggtgaacgcagcagattatggtctcatcacgatgttctcggtgtactgaaaggaaacttagtgagaattatatcattttta |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7761407 |
ggagtcgacatcaaaccctggtgaacgcagcagattatggtctcatcacgatgttctcggtgtactgaaaggaaacttagtgagaattatatcattttta |
7761308 |
T |
|
| Q |
408 |
ctttgttaatataccttcnnnnnnnnnaactttggcaaatatattttagtctcaaactatctacatttt |
476 |
Q |
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| T |
7761307 |
ctttgttaatatacctttcttttttttaactttggcaaatatattttagtctcaaactatctacatttt |
7761239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 25 - 394
Target Start/End: Complemental strand, 7838107 - 7837738
Alignment:
| Q |
25 |
atattgaattgcagagatatagaaaggttccagatgctgagattcagggtgtattggaaatcagctacaatggcctatctgacttggaacaaaaagcttt |
124 |
Q |
| |
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|||||||| |||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||| || |||| ||| |
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| T |
7838107 |
atattgaactgcagaaatatagaaaggttccagatgctgagattcaaagtgtactggaaatcagctacaaaggcctatctgacttggaccagaaagtttt |
7838008 |
T |
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| Q |
125 |
tctggacattgcttgttttttcaaaggggaaagatgggattatgttaaaaggatacaagaagcttgtgattttttcccagttatacgagtatttgttagt |
224 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||| ||| | ||||||||||||||| |||||||| |
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| T |
7838007 |
tctggacattgcttgttttttcaaaggcgaaagatgggattatgttaaaaggatactcgatgcttgtggtttctacccagttatacgagtctttgttagc |
7837908 |
T |
|
| Q |
225 |
aaatgtctcctaactgttgatgaaaatggttgtatagaaatgcatgatttaatacaagacatgggtagagagattgttcggaaggagtcgacatcaaacc |
324 |
Q |
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|||||||| ||| ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||| ||||||| || ||||| ||||||| |
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| T |
7837907 |
aaatgtctgttaattgttgatgaaaatggttgtttagagatgcatgatctaatacaagacatgggtagagagattattcggaaagaatcgacttcaaacc |
7837808 |
T |
|
| Q |
325 |
ctggtgaacgcagcagattatggtctcatcacgatgttctcggtgtactgaaaggaaacttagtgagaat |
394 |
Q |
| |
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|||||||||||||||| |||||||||||| | |||| ||| | ||| |||||||||||||| || ||||| |
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| T |
7837807 |
ctggtgaacgcagcaggttatggtctcataaagatgctcttgatgtgctgaaaggaaacttggtaagaat |
7837738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 7754598 - 7754192
Alignment:
| Q |
18 |
gaatcggatattgaattgcagagatatagaaaggttccagatgctgagattcagggtgtattggaaatcagctacaatggcctatctgacttggaacaaa |
117 |
Q |
| |
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|||| |||||||||| | |||| |||||||||||| ||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||| || | |
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| T |
7754598 |
gaatgggatattgaacttcagaaatatagaaaggtcccagatgctgagattcaaggtgtaatggaaatcagctacaaaggcctatctgacttggaccaga |
7754499 |
T |
|
| Q |
118 |
aagcttttctggacattgcttgttttttcaaaggggaaagatgggattatgttaaaaggatacaagaagcttgtgattttttcccagttatacgagtatt |
217 |
Q |
| |
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|| |||||| ||||| || ||||| ||||||||||||||||||||||||| ||||||||||| ||| ||||||||||| | |||||||||||||| || |
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| T |
7754498 |
aaatttttctagacatcgcgtgtttcttcaaaggggaaagatgggattatgctaaaaggatactagacgcttgtgatttctacccagttatacgagcgtt |
7754399 |
T |
|
| Q |
218 |
tgttagtaaatgtctcctaactgttgatgaaaatggttgtatagaaatgcatgatttaatacaagacatgggtagagagattgttcggaaggagtcgaca |
317 |
Q |
| |
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| ||||||||||||| ||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||| ||||| || || ||| |
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| T |
7754398 |
taatagtaaatgtctcataactgttgatgaaaatggtttgctacaaatgcatgatctaatacaagacatgggtagagagattgtacggaaagaatcaaca |
7754299 |
T |
|
| Q |
318 |
tcaaaccctggtgaacgcagcagattatggtctcatcacgatgttctcggtgtactgaaaggaaacttagtgagaattatatcatttttactttgttaat |
417 |
Q |
| |
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||||||||||||||||| |||||||| ||||||||| | |||||||| | ||||||||||||||| || || ||||||||||||| |||||||| ||||| |
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| T |
7754298 |
tcaaaccctggtgaacgtagcagattgtggtctcataaagatgttcttgatgtactgaaaggaaatttggtaagaattatatcatctttactttcttaat |
7754199 |
T |
|
| Q |
418 |
atacctt |
424 |
Q |
| |
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| ||||| |
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| T |
7754198 |
agacctt |
7754192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 353
Target Start/End: Original strand, 7828478 - 7828590
Alignment:
| Q |
241 |
ttgatgaaaatggttgtatagaaatgcatgatttaatacaagacatgggtagagagattgttcggaaggagtcgacatcaaaccctggtgaacgcagcag |
340 |
Q |
| |
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||||||||||||| || | || ||||||||| |||||||||| |||||||||||| ||||| | ||| | ||| || || ||||||| | |||||||| |
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| T |
7828478 |
ttgatgaaaatggctgcttggagatgcatgatctaatacaagatatgggtagagaggttgttagaaagaaatcgctattaatccctggtaaccgcagcag |
7828577 |
T |
|
| Q |
341 |
attatggtctcat |
353 |
Q |
| |
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||||||| |||| |
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| T |
7828578 |
gttatggtatcat |
7828590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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