View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0773_low_16 (Length: 320)
Name: NF0773_low_16
Description: NF0773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0773_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 62 - 222
Target Start/End: Original strand, 33381965 - 33382125
Alignment:
| Q |
62 |
aataatttcataagtgcattaaatttgtatagtttacaagaagcaatcgttacgttaagattggccgctcctaactgatacacattattcctttgttatt |
161 |
Q |
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| T |
33381965 |
aataatttcataagtgcattaaatttatatagtttacaagaagcaatcgttacgttaagattggccgctcctaactgatacacattattcctttgttatt |
33382064 |
T |
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| Q |
162 |
caacaaaatctgcagctgggtatggatcttattcaatctaatatcatggactcgagatggg |
222 |
Q |
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| T |
33382065 |
caacaaaatctgcagctgggtatggatcttattcaatctaatatcatggactcgagatggg |
33382125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 80 - 208
Target Start/End: Original strand, 33266779 - 33266910
Alignment:
| Q |
80 |
ttaaatttgtatagtttacaagaagcaatcgttacgttaagattggccgctcctaactgatacacatt---attcctttgttattcaacaaaatctgcag |
176 |
Q |
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| T |
33266779 |
ttaattttatatagtctacaagaagcaatcattacgttaaggttggccgctcctaactgatacacattcttattcctttgttattcaacaaaaactgcag |
33266878 |
T |
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| Q |
177 |
ctgggtatggatcttattcaatctaatatcat |
208 |
Q |
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| T |
33266879 |
ctggatatggatcttattcaatctaatatcat |
33266910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 33276517 - 33276575
Alignment:
| Q |
106 |
aatcgttacgttaagattggccgctcctaactgatacaca---ttattcctttgttatt |
161 |
Q |
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| T |
33276517 |
aatcgttacgttaaggttggccgctcctaactgatacacattcttattcctttgttatt |
33276575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 33381904 - 33381942
Alignment:
| Q |
1 |
tattgtacatatgttgagtgacaaagattcaggccaatg |
39 |
Q |
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| T |
33381904 |
tattgtacatatgttgagtgacaaagattcaggccaatg |
33381942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 24630361 - 24630323
Alignment:
| Q |
1 |
tattgtacatatgttgagtgacaaagattcaggccaatg |
39 |
Q |
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| T |
24630361 |
tattgtacatatgttgagtgacaaagagttaggccaatg |
24630323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 65 - 221
Target Start/End: Complemental strand, 12581063 - 12580907
Alignment:
| Q |
65 |
aatttcataagtgcattaaatttgtatagtttacaagaagcaatcgttacgttaagattggccgctcctaactgatacacattatt-cctttgttattca |
163 |
Q |
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||||||||||| || ||||||||||||| |||| ||||||||||||| |||| ||||| ||| |||||| ||||| | |||| ||||||||||| |
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| T |
12581063 |
aatttcataagcgctttaaatttgtatattttatttgaagcaatcgttattttaatgttggctgctactaactaataca-actattaattttgttattca |
12580965 |
T |
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| Q |
164 |
acaaaatctgcagctgggtatggatcttattcaatctaatatcatggactcgagatgg |
221 |
Q |
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|| ||| |||||||||| |||||| |||||||||||||||||||||||| ||||||| |
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| T |
12580964 |
actaaaactgcagctggacatggattttattcaatctaatatcatggacttgagatgg |
12580907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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