View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0773_low_17 (Length: 320)
Name: NF0773_low_17
Description: NF0773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0773_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 33381928 - 33381699
Alignment:
| Q |
1 |
tttgtcactcaacatatgtacaataatattcaaaacagtttgagcattattattgttttcctccaacaatttatggtgttgatttcttctttcaaaatca |
100 |
Q |
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| T |
33381928 |
tttgtcactcaacatatgtacaataatattcaaaacagtttgagcattattattgttttcctccaacaatttatggtgttgatttcttctttcaaaatca |
33381829 |
T |
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| Q |
101 |
atagttttatttttcttgcaagttgaaaacttccgtgttggctgatctcataagtaatctccttaatcacaaagggagagagatgctttaaaatataaag |
200 |
Q |
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| T |
33381828 |
atagttttatttttcttgcaagttgaaaacttccgttttggctgatctcataagtaatctccttaatcacaaagggagagagatgctttaaaatataaag |
33381729 |
T |
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| Q |
201 |
gatagtcattcatattgtatgttgatgatg |
230 |
Q |
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| T |
33381728 |
gatagtcattcatattgtatgttgatgatg |
33381699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 24630337 - 24630485
Alignment:
| Q |
1 |
tttgtcactcaacatatgtacaataatattcaaaacagtttgagcattattattgttttcctccaacaatttatggtgttgatttcttctttcaaaatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24630337 |
tttgtcactcaacatatgtacaataatattcaaaactgtttgagcattattattgttttcctccaacaatttatggtgttgatttcttcttacaaaatca |
24630436 |
T |
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| Q |
101 |
atagttttatttttcttgcaagttgaaaacttccgtgttggctgatctc |
149 |
Q |
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| T |
24630437 |
atacttttatttttcttgcaggttgaagacttccatgtttgctgatctc |
24630485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 230
Target Start/End: Complemental strand, 33061858 - 33061795
Alignment:
| Q |
167 |
tcacaaagggagagagatgctttaaaatataaaggatagtcattcatattgtatgttgatgatg |
230 |
Q |
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| T |
33061858 |
tcacaaaaggagagggatgctttaaaatataaaggatagccattcgtattgtatgttgatgatg |
33061795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 33404443 - 33404376
Alignment:
| Q |
163 |
ttaatcacaaagggagagagatgctttaaaatataaaggatagtcattcatattgtatgttgatgatg |
230 |
Q |
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| T |
33404443 |
ttaatcacaaatggagagatatgctttaaaatataaaggatagccattcttgttgtatgctgatgatg |
33404376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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